Wall clock time and date at job start Tue Mar 31 2020 05:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00171 * 2 1 4 4 H 1.48500 * 109.46986 * 269.99310 * 3 2 1 5 5 H 1.48491 * 109.47170 * 29.99731 * 3 2 1 6 6 H 1.48504 * 109.47135 * 149.99985 * 3 2 1 7 7 C 1.37883 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99820 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00087 * 180.02562 * 7 2 1 10 10 H 1.08994 * 109.46868 * 299.99998 * 9 7 2 11 11 O 1.42898 * 109.47048 * 59.99994 * 9 7 2 12 12 C 1.52995 * 109.46975 * 179.97438 * 9 7 2 13 13 N 1.46902 * 109.46851 * 179.97438 * 12 9 7 14 14 C 1.46856 * 110.99619 * 170.00352 * 13 12 9 15 15 C 1.53039 * 109.51787 * 185.84053 * 14 13 12 16 16 C 1.53123 * 109.31189 * 300.79882 * 15 14 13 17 17 C 1.50697 * 109.52128 * 177.58251 * 16 15 14 18 18 C 1.38424 * 122.53881 * 119.73797 * 17 16 15 19 19 C 1.33388 * 114.92159 * 179.75760 * 18 17 16 20 20 S 1.75884 * 109.59260 * 0.47792 * 19 18 17 21 21 C 1.33392 * 122.54126 * 300.02078 * 17 16 15 22 22 C 1.53203 * 109.11533 * 57.63615 * 16 15 14 23 23 C 1.46846 * 111.00121 * 294.21235 * 13 12 9 24 24 H 0.97003 * 119.99254 * 0.02562 * 1 2 3 25 25 H 0.96703 * 114.00009 * 59.99486 * 11 9 7 26 26 H 1.08998 * 109.46811 * 60.00499 * 12 9 7 27 27 H 1.08994 * 109.47485 * 299.99820 * 12 9 7 28 28 H 1.09000 * 109.46462 * 65.82793 * 14 13 12 29 29 H 1.09001 * 109.45242 * 305.84772 * 14 13 12 30 30 H 1.09002 * 109.50563 * 60.76214 * 15 14 13 31 31 H 1.09003 * 109.50107 * 180.84195 * 15 14 13 32 32 H 1.08997 * 109.52263 * 297.77214 * 16 15 14 33 33 H 1.08007 * 122.53834 * 359.97438 * 18 17 16 34 34 H 1.07994 * 125.20563 * 180.21057 * 19 18 17 35 35 H 1.08000 * 125.19930 * 0.02863 * 21 17 16 36 36 H 1.08997 * 109.49417 * 182.41991 * 22 16 15 37 37 H 1.09007 * 109.52297 * 62.34418 * 22 16 15 38 38 H 1.09004 * 109.46012 * 294.17710 * 23 13 12 39 39 H 1.08997 * 109.46257 * 54.15030 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1942 0.0011 10 1 3.8752 -0.6806 -0.8888 11 8 3.9874 -0.5203 1.1679 12 6 4.0214 -2.6367 0.0023 13 7 5.4905 -2.6367 0.0022 14 6 6.0166 -3.9867 0.2413 15 6 7.5395 -3.9249 0.3794 16 6 8.1411 -3.3430 -0.9029 17 6 9.6355 -3.2247 -0.7495 18 6 10.5239 -3.8848 -1.5809 19 6 11.8123 -3.6682 -1.3121 20 16 11.9531 -2.5869 0.0680 21 6 10.2026 -2.4804 0.2012 22 6 7.5395 -1.9567 -1.1550 23 6 6.0167 -2.0755 -1.2486 24 1 -0.4849 0.8401 -0.0004 25 1 3.7017 -0.9236 1.9991 26 1 3.6585 -3.1510 -0.8875 27 1 3.6578 -3.1499 0.8924 28 1 5.7539 -4.6326 -0.5965 29 1 5.5848 -4.3875 1.1584 30 1 7.8028 -3.2902 1.2255 31 1 7.9312 -4.9291 0.5419 32 1 7.9109 -3.9980 -1.7431 33 1 10.1984 -4.5239 -2.3885 34 1 12.6421 -4.0951 -1.8556 35 1 9.6684 -1.9014 0.9399 36 1 7.9313 -1.5547 -2.0893 37 1 7.8029 -1.2904 -0.3335 38 1 5.7538 -2.7304 -2.0793 39 1 5.5850 -1.0884 -1.4137 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334093034.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:32 Heat of formation + Delta-G solvation = -17.982176 kcal Electronic energy + Delta-G solvation = -19967.772200 eV Core-core repulsion = 17001.670912 eV Total energy + Delta-G solvation = -2966.101288 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.60916 -37.72493 -35.77955 -33.03272 -32.19972 -30.68660 -29.51475 -28.17342 -25.76744 -24.01496 -23.03796 -22.18504 -20.18074 -19.56003 -18.65637 -17.76244 -17.32994 -15.75777 -14.96894 -14.87815 -14.66078 -14.46054 -14.03302 -13.91798 -13.47590 -13.41905 -13.14589 -12.75574 -12.59645 -12.48628 -12.32372 -11.91482 -11.54963 -11.29327 -11.03908 -10.97532 -10.89744 -10.57628 -10.43769 -10.41844 -10.11967 -9.76849 -8.97807 -8.90768 -8.59577 -8.47429 -8.20374 -7.73127 -6.11094 -4.22044 0.88601 1.53805 1.86098 2.59037 3.40925 3.50653 3.78699 4.32830 4.56289 4.62597 4.82093 5.01250 5.03504 5.17416 5.24673 5.35836 5.39898 5.54903 5.56526 5.72152 5.73479 5.83888 5.88401 5.92034 5.96778 6.06734 6.11730 6.22158 6.27403 6.30660 6.35628 6.42243 6.57739 6.65729 7.31851 7.44354 7.64051 7.73829 8.31921 8.86047 9.15109 9.54357 10.99656 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034029 B = 0.003631 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.636679 B = 7709.490545 C = 8100.487783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.083 3.917 3 Si 0.870 3.130 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.215 1.215 7 C -0.566 4.566 8 H 0.070 0.930 9 C 0.202 3.798 10 H 0.052 0.948 11 O -0.570 6.570 12 C 0.040 3.960 13 N -0.529 5.529 14 C 0.055 3.945 15 C -0.103 4.103 16 C -0.029 4.029 17 C -0.091 4.091 18 C -0.128 4.128 19 C -0.216 4.216 20 S 0.078 5.922 21 C -0.201 4.201 22 C -0.104 4.104 23 C 0.054 3.946 24 H 0.264 0.736 25 H 0.354 0.646 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.025 0.975 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.138 0.862 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.026 0.974 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.431 -8.104 -1.451 23.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.121 4.121 3 Si 0.697 3.303 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.137 1.137 7 C -0.603 4.603 8 H 0.088 0.912 9 C 0.144 3.856 10 H 0.070 0.930 11 O -0.375 6.375 12 C -0.087 4.087 13 N -0.253 5.253 14 C -0.074 4.074 15 C -0.141 4.141 16 C -0.050 4.050 17 C -0.103 4.103 18 C -0.159 4.159 19 C -0.352 4.352 20 S 0.342 5.658 21 C -0.337 4.337 22 C -0.142 4.142 23 C -0.074 4.074 24 H 0.074 0.926 25 H 0.199 0.801 26 H 0.049 0.951 27 H 0.087 0.913 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.155 0.845 34 H 0.179 0.821 35 H 0.183 0.817 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.044 0.956 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 23.967 -6.697 -0.707 24.896 hybrid contribution -1.557 -0.764 -1.242 2.133 sum 22.411 -7.461 -1.949 23.700 Atomic orbital electron populations 1.69965 1.06811 1.27434 1.48994 1.24991 0.94600 1.00002 0.92520 0.87034 0.83217 0.81741 0.78329 1.21525 1.22297 1.13686 1.21538 0.90017 0.94756 1.54035 0.91155 1.19708 0.92932 0.87025 0.85961 0.93049 1.86655 1.77921 1.56896 1.16034 1.22815 0.84620 1.01022 1.00237 1.61945 1.08877 1.20134 1.34365 1.22072 0.94664 0.90329 1.00309 1.21633 0.94711 1.00517 0.97261 1.19991 0.88387 0.97958 0.98684 1.18977 0.96880 0.98472 0.95976 1.20153 0.91993 1.02206 1.01522 1.25540 1.00627 1.06014 1.02991 1.84248 1.05533 1.46593 1.29456 1.25471 0.95784 1.07184 1.05221 1.21658 0.94834 0.95749 1.01955 1.22094 0.94357 1.00663 0.90248 0.92623 0.80065 0.95146 0.91291 0.95639 0.90974 0.90974 0.92004 0.90882 0.84450 0.82143 0.81705 0.91916 0.90881 0.95587 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.42 13.96 55.43 0.77 -26.65 16 2 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 3 Si 0.87 21.93 26.99 -169.99 -4.59 17.35 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.21 -5.30 5.31 56.52 0.30 -5.00 16 7 C -0.57 -15.67 9.34 -34.44 -0.32 -15.99 16 8 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 9 C 0.20 4.68 2.19 -27.88 -0.06 4.62 16 10 H 0.05 1.24 5.86 -51.93 -0.30 0.93 16 11 O -0.57 -13.03 10.01 -35.23 -0.35 -13.38 16 12 C 0.04 0.79 4.56 -3.83 -0.02 0.77 16 13 N -0.53 -8.83 4.52 -234.67 -1.06 -9.90 16 14 C 0.05 0.75 5.46 -3.83 -0.02 0.73 16 15 C -0.10 -1.22 5.24 -26.65 -0.14 -1.36 16 16 C -0.03 -0.33 2.51 -91.61 -0.23 -0.56 16 17 C -0.09 -0.99 4.68 -106.25 -0.50 -1.48 16 18 C -0.13 -1.25 9.92 -41.21 -0.41 -1.66 16 19 C -0.22 -1.93 11.23 29.04 0.33 -1.60 16 20 S 0.08 0.73 23.34 -107.50 -2.51 -1.78 16 21 C -0.20 -2.14 9.89 29.04 0.29 -1.85 16 22 C -0.10 -1.35 5.24 -26.61 -0.14 -1.49 16 23 C 0.05 0.85 5.29 -3.84 -0.02 0.83 16 24 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.35 7.29 9.04 45.56 0.41 7.71 16 26 H 0.03 0.61 8.12 -51.93 -0.42 0.18 16 27 H 0.07 1.33 7.99 -51.93 -0.41 0.92 16 28 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.97 8.02 -51.93 -0.42 0.56 16 30 H 0.07 0.90 7.67 -51.93 -0.40 0.50 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.81 8.04 -51.93 -0.42 0.40 16 33 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 34 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.17 1.70 7.77 -52.49 -0.41 1.29 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.01 7.66 -51.92 -0.40 0.62 16 38 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 1.45 6.21 -51.93 -0.32 1.12 16 LS Contribution 320.70 15.07 4.83 4.83 Total: -1.00 -30.71 320.70 -9.53 -40.23 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -5.28 Total: 6.04 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -1.34 Total: -16.74 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.29 Total: -36.54 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.35 Total: -13.38 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.59 Total: 17.35 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.51 Total: -1.78 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.71 -9.53 -40.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334093034.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.249 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds