Wall clock time and date at job start Tue Mar 31 2020 05:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34784 * 116.99958 * 2 1 4 4 O 1.21548 * 119.99982 * 359.97438 * 3 2 1 5 5 C 1.47174 * 119.99772 * 179.97438 * 3 2 1 6 6 C 1.36505 * 126.24459 * 180.02562 * 5 3 2 7 7 N 1.35330 * 106.86524 * 179.97438 * 6 5 3 8 8 C 1.46505 * 126.12336 * 179.97438 * 7 6 5 9 9 C 1.50692 * 109.47080 * 265.02409 * 8 7 6 10 10 O 1.21277 * 120.00409 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99736 * 180.02562 * 9 8 7 12 12 C 1.46510 * 119.99907 * 180.02562 * 11 9 8 13 13 C 1.50692 * 109.46826 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00643 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99646 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99917 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00168 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47199 * 89.99613 * 17 15 13 19 19 H 1.48497 * 109.47732 * 210.00032 * 17 15 13 20 20 H 1.48506 * 109.46910 * 330.00307 * 17 15 13 21 21 C 1.35860 * 107.74912 * 359.97438 * 7 6 5 22 22 C 1.50698 * 125.49282 * 179.97438 * 21 7 6 23 23 N 1.30163 * 109.01840 * 0.02562 * 21 7 6 24 24 H 1.08998 * 109.47395 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47236 * 300.00350 * 1 2 3 26 26 H 1.08998 * 109.46959 * 60.00183 * 1 2 3 27 27 H 1.08006 * 126.56630 * 359.71782 * 6 5 3 28 28 H 1.09002 * 109.47057 * 25.02886 * 8 7 6 29 29 H 1.09004 * 109.46777 * 145.02337 * 8 7 6 30 30 H 0.96994 * 120.00119 * 0.02562 * 11 9 8 31 31 H 1.08997 * 109.46706 * 300.00478 * 12 11 9 32 32 H 1.08998 * 109.46950 * 60.00082 * 12 11 9 33 33 H 0.97001 * 119.99720 * 180.02562 * 16 15 13 34 34 H 1.09002 * 109.47287 * 270.00589 * 22 21 7 35 35 H 1.08999 * 109.46737 * 30.00503 * 22 21 7 36 36 H 1.08994 * 109.47170 * 150.00471 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4019 2.2203 -0.0005 5 6 3.5337 1.2779 0.0006 6 6 4.2820 2.4195 0.0011 7 7 5.5804 2.0379 0.0021 8 6 6.7428 2.9296 0.0024 9 6 7.2172 3.1370 -1.4127 10 8 6.6409 2.5939 -2.3313 11 7 8.2820 3.9261 -1.6577 12 6 8.7429 4.1282 -3.0336 13 6 9.9386 5.0454 -3.0331 14 1 10.3176 5.4382 -2.1012 15 6 10.5488 5.3831 -4.2226 16 7 10.0876 4.9045 -5.3574 17 14 12.0313 6.5195 -4.2221 18 1 13.2728 5.7135 -4.1010 19 1 12.0640 7.2913 -5.4903 20 1 11.9360 7.4570 -3.0743 21 6 5.6128 0.6797 0.0027 22 6 6.8603 -0.1658 0.0033 23 7 4.3927 0.2262 0.0016 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.9093 3.4332 -0.0030 28 1 6.4640 3.8898 0.4366 29 1 7.5432 2.4829 0.5923 30 1 8.7431 4.3602 -0.9230 31 1 9.0210 3.1681 -3.4683 32 1 7.9425 4.5756 -3.6229 33 1 10.5171 5.1418 -6.1941 34 1 7.1614 -0.3700 -1.0242 35 1 7.6602 0.3674 0.5171 36 1 6.6617 -1.1061 0.5174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337117969.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:30 Heat of formation + Delta-G solvation = -63.930734 kcal Electronic energy + Delta-G solvation = -21167.218236 eV Core-core repulsion = 17652.831255 eV Total energy + Delta-G solvation = -3514.386981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.38487 -40.05259 -38.98722 -36.37419 -34.55703 -34.06508 -32.51525 -31.97813 -29.06462 -28.20933 -27.15311 -26.55237 -23.54740 -22.72171 -20.67816 -20.40317 -19.78329 -18.11960 -17.60296 -16.92534 -16.42937 -16.22462 -16.00269 -15.19072 -15.05933 -14.95129 -14.31003 -14.05730 -13.75474 -13.38094 -13.32013 -13.09776 -12.76883 -12.57150 -12.43171 -12.12440 -12.11436 -11.78406 -11.11070 -10.99020 -10.81417 -10.74524 -10.46540 -10.25482 -10.21195 -9.55421 -9.26289 -8.89605 -8.54187 -8.15564 -6.28746 -4.37252 1.33313 2.14622 2.36948 2.84552 2.90380 3.16233 3.22791 3.24841 3.35019 3.74020 4.20913 4.24015 4.52006 4.56255 4.80911 4.97624 5.02187 5.07777 5.09490 5.11064 5.14841 5.39186 5.45894 5.53867 5.81181 5.98214 6.22458 6.39841 6.86683 7.08767 7.12889 7.32657 7.47734 7.60633 7.81194 7.96561 8.31402 8.55409 8.78944 9.29720 10.81225 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034543 B = 0.003035 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.398173 B = 9223.150579 C = 9520.741996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.341 6.341 3 C 0.560 3.440 4 O -0.516 6.516 5 C -0.057 4.057 6 C 0.060 3.940 7 N -0.431 5.431 8 C 0.076 3.924 9 C 0.480 3.520 10 O -0.534 6.534 11 N -0.703 5.703 12 C 0.251 3.749 13 C -0.548 4.548 14 H 0.064 0.936 15 C 0.065 3.935 16 N -0.883 5.883 17 Si 0.905 3.095 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.229 3.771 22 C -0.070 4.070 23 N -0.446 5.446 24 H 0.101 0.899 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.191 0.809 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.393 0.607 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.268 0.732 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.089 -6.682 14.720 18.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.256 6.256 3 C 0.405 3.595 4 O -0.405 6.405 5 C -0.184 4.184 6 C -0.080 4.080 7 N -0.111 5.111 8 C -0.050 4.050 9 C 0.261 3.739 10 O -0.412 6.412 11 N -0.352 5.352 12 C 0.130 3.870 13 C -0.586 4.586 14 H 0.082 0.918 15 C -0.140 4.140 16 N -0.520 5.520 17 Si 0.732 3.268 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.197 1.197 21 C -0.035 4.035 22 C -0.129 4.129 23 N -0.165 5.165 24 H 0.119 0.881 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.208 0.792 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.226 0.774 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.834 -7.541 13.812 18.557 hybrid contribution 1.056 1.871 0.104 2.151 sum -8.778 -5.671 13.916 17.403 Atomic orbital electron populations 1.23272 0.76522 1.03602 1.02431 1.86678 1.22840 1.32139 1.83983 1.19615 0.86620 0.81366 0.71871 1.90853 1.66000 1.36077 1.47555 1.19149 0.90739 0.90258 1.18224 1.22456 0.82505 1.00346 1.02671 1.44827 1.05971 1.07491 1.52820 1.21969 0.88326 0.96209 0.98496 1.20412 0.82297 0.81284 0.89869 1.90776 1.56300 1.48814 1.45282 1.46449 1.29258 1.46714 1.12786 1.19185 0.94710 0.97217 0.75853 1.21172 1.13648 1.30181 0.93605 0.91766 1.24960 0.97660 0.96171 0.95167 1.69968 1.40527 1.43543 0.97993 0.86387 0.82216 0.80413 0.77743 1.20370 1.20929 1.19710 1.23504 0.95860 0.80403 1.03751 1.20267 0.89844 0.98284 1.04479 1.70657 0.98397 1.29312 1.18167 0.88106 0.91991 0.91905 0.79231 0.85780 0.85784 0.77379 0.95260 0.95329 0.92268 0.89298 0.90642 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.57 101.05 1.07 1.41 16 2 O -0.34 -4.88 10.58 -40.72 -0.43 -5.31 16 3 C 0.56 8.86 7.95 34.36 0.27 9.13 16 4 O -0.52 -8.62 16.67 -19.30 -0.32 -8.94 16 5 C -0.06 -0.92 7.01 -83.11 -0.58 -1.50 16 6 C 0.06 0.86 11.25 -16.63 -0.19 0.67 16 7 N -0.43 -5.83 2.21 -114.97 -0.25 -6.08 16 8 C 0.08 0.83 6.34 -5.19 -0.03 0.80 16 9 C 0.48 8.15 7.90 -10.99 -0.09 8.06 16 10 O -0.53 -11.91 16.42 5.56 0.09 -11.82 16 11 N -0.70 -12.69 5.55 -61.47 -0.34 -13.03 16 12 C 0.25 6.15 5.43 -5.19 -0.03 6.12 16 13 C -0.55 -13.91 9.28 -34.44 -0.32 -14.23 16 14 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.88 -25.12 13.29 55.43 0.74 -24.39 16 17 Si 0.91 19.93 29.54 -169.99 -5.02 14.91 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 21 C 0.23 3.28 7.89 -154.95 -1.22 2.06 16 22 C -0.07 -0.75 10.19 36.00 0.37 -0.38 16 23 N -0.45 -7.34 11.33 -7.24 -0.08 -7.42 16 24 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.19 2.22 8.06 -52.48 -0.42 1.80 16 28 H 0.12 0.95 8.13 -51.93 -0.42 0.53 16 29 H 0.12 0.92 7.19 -51.93 -0.37 0.55 16 30 H 0.39 5.68 8.32 -40.82 -0.34 5.34 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.61 7.15 -51.93 -0.37 0.24 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 327.90 15.07 4.94 4.94 Total: -1.00 -35.62 327.90 -5.95 -41.57 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -4.42 Total: 1.81 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: -0.85 Total: 13.76 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.06 Total: -50.92 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.66 Total: -26.07 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.62 -5.95 -41.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337117969.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.359 kcal (2) G-P(sol) polarization free energy of solvation -35.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds