Wall clock time and date at job start Tue Mar 31 2020 05:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34784 * 116.99958 * 2 1 4 4 O 1.21548 * 119.99982 * 359.97438 * 3 2 1 5 5 C 1.47174 * 119.99772 * 179.97438 * 3 2 1 6 6 C 1.36505 * 126.24459 * 180.02562 * 5 3 2 7 7 N 1.35330 * 106.86524 * 179.97438 * 6 5 3 8 8 C 1.46505 * 126.12336 * 179.97438 * 7 6 5 9 9 C 1.50692 * 109.47080 * 265.02409 * 8 7 6 10 10 O 1.21277 * 120.00409 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99736 * 180.02562 * 9 8 7 12 12 C 1.46510 * 119.99907 * 180.02562 * 11 9 8 13 13 C 1.50692 * 109.46826 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00643 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99646 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99917 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00168 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47199 * 89.99613 * 17 15 13 19 19 H 1.48497 * 109.47732 * 210.00032 * 17 15 13 20 20 H 1.48506 * 109.46910 * 330.00307 * 17 15 13 21 21 C 1.35860 * 107.74912 * 359.97438 * 7 6 5 22 22 C 1.50698 * 125.49282 * 179.97438 * 21 7 6 23 23 N 1.30163 * 109.01840 * 0.02562 * 21 7 6 24 24 H 1.08998 * 109.47395 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47236 * 300.00350 * 1 2 3 26 26 H 1.08998 * 109.46959 * 60.00183 * 1 2 3 27 27 H 1.08006 * 126.56630 * 359.71782 * 6 5 3 28 28 H 1.09002 * 109.47057 * 25.02886 * 8 7 6 29 29 H 1.09004 * 109.46777 * 145.02337 * 8 7 6 30 30 H 0.96994 * 120.00119 * 0.02562 * 11 9 8 31 31 H 1.08997 * 109.46706 * 300.00478 * 12 11 9 32 32 H 1.08998 * 109.46950 * 60.00082 * 12 11 9 33 33 H 0.97001 * 119.99720 * 180.02562 * 16 15 13 34 34 H 1.09002 * 109.47287 * 270.00589 * 22 21 7 35 35 H 1.08999 * 109.46737 * 30.00503 * 22 21 7 36 36 H 1.08994 * 109.47170 * 150.00471 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4019 2.2203 -0.0005 5 6 3.5337 1.2779 0.0006 6 6 4.2820 2.4195 0.0011 7 7 5.5804 2.0379 0.0021 8 6 6.7428 2.9296 0.0024 9 6 7.2172 3.1370 -1.4127 10 8 6.6409 2.5939 -2.3313 11 7 8.2820 3.9261 -1.6577 12 6 8.7429 4.1282 -3.0336 13 6 9.9386 5.0454 -3.0331 14 1 10.3176 5.4382 -2.1012 15 6 10.5488 5.3831 -4.2226 16 7 10.0876 4.9045 -5.3574 17 14 12.0313 6.5195 -4.2221 18 1 13.2728 5.7135 -4.1010 19 1 12.0640 7.2913 -5.4903 20 1 11.9360 7.4570 -3.0743 21 6 5.6128 0.6797 0.0027 22 6 6.8603 -0.1658 0.0033 23 7 4.3927 0.2262 0.0016 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.9093 3.4332 -0.0030 28 1 6.4640 3.8898 0.4366 29 1 7.5432 2.4829 0.5923 30 1 8.7431 4.3602 -0.9230 31 1 9.0210 3.1681 -3.4683 32 1 7.9425 4.5756 -3.6229 33 1 10.5171 5.1418 -6.1941 34 1 7.1614 -0.3700 -1.0242 35 1 7.6602 0.3674 0.5171 36 1 6.6617 -1.1061 0.5174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337117969.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:30 Heat of formation + Delta-G solvation = -89.942053 kcal Electronic energy + Delta-G solvation = -21168.346171 eV Core-core repulsion = 17652.831255 eV Total energy + Delta-G solvation = -3515.514917 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.45627 -41.18522 -40.44886 -37.49552 -36.26060 -35.23836 -34.38618 -32.95242 -30.43056 -29.24108 -28.46866 -27.72117 -24.93415 -24.25403 -22.00402 -21.57842 -20.97667 -19.43037 -18.89027 -18.02002 -17.87414 -17.40644 -17.36931 -16.76868 -16.39847 -16.27266 -15.72742 -15.16223 -14.83247 -14.62624 -14.39785 -14.28242 -14.15579 -14.02563 -13.55521 -13.29371 -13.12225 -12.96743 -12.93372 -12.71140 -12.23600 -11.91960 -11.81615 -11.52499 -11.49605 -11.35243 -10.81632 -10.62871 -9.91690 -9.63856 -8.29740 -6.46203 0.19624 1.04150 1.37245 1.45088 1.46295 1.56908 1.57486 1.84899 2.20280 2.31008 2.52280 3.06312 3.20815 3.55039 3.71393 3.82745 3.99332 4.08911 4.20990 4.29594 4.33137 4.58518 4.67885 4.70054 4.92820 5.00101 5.09182 5.18447 5.22232 5.32433 5.43236 5.62694 5.82808 5.88852 6.50524 6.64682 6.78542 6.85792 7.22392 7.39516 8.82190 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034543 B = 0.003035 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.398173 B = 9223.150579 C = 9520.741996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.558 3.442 4 O -0.535 6.535 5 C -0.090 4.090 6 C 0.064 3.936 7 N -0.433 5.433 8 C 0.089 3.911 9 C 0.480 3.520 10 O -0.594 6.594 11 N -0.695 5.695 12 C 0.267 3.733 13 C -0.553 4.553 14 H 0.090 0.910 15 C 0.003 3.997 16 N -0.933 5.933 17 Si 0.982 3.018 18 H -0.271 1.271 19 H -0.289 1.289 20 H -0.253 1.253 21 C 0.223 3.777 22 C -0.070 4.070 23 N -0.478 5.478 24 H 0.132 0.868 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.212 0.788 28 H 0.170 0.830 29 H 0.173 0.827 30 H 0.415 0.585 31 H -0.011 1.011 32 H -0.015 1.015 33 H 0.268 0.732 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.750 -5.746 17.359 19.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.270 6.270 3 C 0.404 3.596 4 O -0.425 6.425 5 C -0.215 4.215 6 C -0.076 4.076 7 N -0.113 5.113 8 C -0.035 4.035 9 C 0.265 3.735 10 O -0.475 6.475 11 N -0.345 5.345 12 C 0.144 3.856 13 C -0.590 4.590 14 H 0.108 0.892 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.806 3.194 18 H -0.196 1.196 19 H -0.215 1.215 20 H -0.176 1.176 21 C -0.041 4.041 22 C -0.128 4.128 23 N -0.198 5.198 24 H 0.150 0.850 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.229 0.771 28 H 0.187 0.813 29 H 0.190 0.810 30 H 0.252 0.748 31 H 0.007 0.993 32 H 0.003 0.997 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.126 0.874 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.497 -6.607 16.525 19.721 hybrid contribution 0.554 1.500 -0.726 1.756 sum -7.942 -5.108 15.798 18.405 Atomic orbital electron populations 1.23621 0.74206 1.05866 1.02803 1.86658 1.25242 1.31546 1.83580 1.19726 0.86824 0.81547 0.71503 1.90821 1.66404 1.36557 1.48749 1.19459 0.91129 0.91120 1.19792 1.22867 0.82795 1.00841 1.01127 1.45013 1.06326 1.07597 1.52401 1.22201 0.88800 0.98612 0.93930 1.21449 0.80720 0.79183 0.92124 1.90765 1.57843 1.50743 1.48104 1.46053 1.30099 1.47522 1.10845 1.18543 0.93470 0.94776 0.78779 1.21628 1.13310 1.29531 0.94573 0.89213 1.26054 1.00997 0.97876 0.94760 1.70139 1.42546 1.45579 0.98883 0.85188 0.78019 0.78251 0.77966 1.19635 1.21515 1.17634 1.24178 0.96286 0.81218 1.02439 1.20436 0.89267 0.99028 1.04115 1.70610 0.99498 1.30213 1.19504 0.84955 0.91219 0.91954 0.77111 0.81288 0.81006 0.74753 0.99261 0.99690 0.92357 0.90858 0.87365 0.87415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.57 113.37 1.20 1.72 16 2 O -0.35 -10.23 10.58 -56.96 -0.60 -10.83 16 3 C 0.56 17.86 7.95 70.17 0.56 18.42 16 4 O -0.53 -17.99 16.67 19.68 0.33 -17.66 16 5 C -0.09 -2.88 7.01 40.47 0.28 -2.60 16 6 C 0.06 1.75 11.25 83.75 0.94 2.69 16 7 N -0.43 -10.72 2.21 -517.66 -1.15 -11.86 16 8 C 0.09 1.58 6.34 85.63 0.54 2.12 16 9 C 0.48 15.58 7.90 87.65 0.69 16.27 16 10 O -0.59 -26.89 16.42 -3.02 -0.05 -26.94 16 11 N -0.69 -24.09 5.55 -466.79 -2.59 -26.68 16 12 C 0.27 13.42 5.43 85.63 0.46 13.89 16 13 C -0.55 -27.70 9.28 25.60 0.24 -27.47 16 14 H 0.09 3.94 7.60 -2.91 -0.02 3.92 16 15 C 0.00 0.15 5.46 84.66 0.46 0.61 16 16 N -0.93 -54.52 13.29 21.45 0.28 -54.24 16 17 Si 0.98 40.17 29.54 68.60 2.03 42.20 16 18 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 19 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 21 C 0.22 6.10 7.89 137.96 1.09 7.19 16 22 C -0.07 -1.36 10.19 71.24 0.73 -0.63 16 23 N -0.48 -15.67 11.33 -176.83 -2.00 -17.68 16 24 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.21 4.56 8.06 -2.91 -0.02 4.53 16 28 H 0.17 1.62 8.13 -2.39 -0.02 1.60 16 29 H 0.17 1.51 7.19 -2.39 -0.02 1.49 16 30 H 0.42 10.62 8.32 -92.71 -0.77 9.85 16 31 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 32 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 33 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.11 1.32 7.15 -2.39 -0.02 1.31 16 36 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -82.94 327.90 3.79 -79.15 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.34 Total: 12.34 kcal Atomic # 6 Polarization: 25.01 SS G_CDS: 7.20 Total: 32.20 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -5.46 Total: -110.46 kcal Atomic # 8 Polarization: -55.11 SS G_CDS: -0.32 Total: -55.43 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -82.94 3.79 -79.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337117969.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.789 kcal (2) G-P(sol) polarization free energy of solvation -82.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds