Wall clock time and date at job start Tue Mar 31 2020 05:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35236 * 128.01956 * 2 1 4 4 O 1.34092 * 106.61480 * 179.97438 * 3 2 1 5 5 N 1.20907 * 111.75724 * 359.97438 * 4 3 2 6 6 C 1.30755 * 111.46822 * 359.73254 * 5 4 3 7 7 N 1.39358 * 126.90186 * 180.28503 * 6 5 4 8 8 C 1.34775 * 119.99823 * 0.15137 * 7 6 5 9 9 O 1.21357 * 120.00239 * 0.02562 * 8 7 6 10 10 C 1.49377 * 120.00125 * 180.02562 * 8 7 6 11 11 O 1.21360 * 119.99599 * 0.02562 * 10 8 7 12 12 N 1.34775 * 120.00125 * 179.97438 * 10 8 7 13 13 C 1.46501 * 119.99833 * 180.02562 * 12 10 8 14 14 C 1.53007 * 109.47042 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46669 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.46815 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99486 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00196 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99977 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 119.99762 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47202 * 90.00233 * 20 18 16 22 22 H 1.48500 * 109.47102 * 209.99694 * 20 18 16 23 23 H 1.48493 * 109.47457 * 330.00087 * 20 18 16 24 24 H 1.09002 * 109.47152 * 90.02657 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.02757 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.02738 * 1 2 3 27 27 H 1.07996 * 126.69877 * 359.97438 * 3 2 1 28 28 H 0.96999 * 119.99770 * 180.15629 * 7 6 5 29 29 H 0.96996 * 120.00360 * 359.97438 * 12 10 8 30 30 H 1.09000 * 109.46975 * 300.00117 * 13 12 10 31 31 H 1.08997 * 109.47116 * 60.00086 * 13 12 10 32 32 H 1.08998 * 109.46746 * 300.00078 * 14 13 12 33 33 H 1.08997 * 109.46730 * 59.99816 * 14 13 12 34 34 H 1.08998 * 109.47419 * 299.99444 * 15 14 13 35 35 H 1.08997 * 109.47875 * 60.00297 * 15 14 13 36 36 H 0.96997 * 120.00131 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3400 1.0654 0.0000 4 8 3.5884 0.5760 0.0006 5 7 3.5959 -0.6330 0.0014 6 6 2.3820 -1.1190 0.0072 7 7 2.0194 -2.4646 0.0153 8 6 2.9711 -3.4189 0.0210 9 8 4.1438 -3.1065 0.0195 10 6 2.5826 -4.8612 0.0292 11 8 1.4099 -5.1737 0.0302 12 7 3.5343 -5.8155 0.0343 13 6 3.1531 -7.2301 0.0417 14 6 4.4133 -8.0978 0.0471 15 6 4.0152 -9.5750 0.0542 16 6 5.2564 -10.4298 0.0601 17 1 6.2316 -9.9656 0.0586 18 6 5.1470 -11.8042 0.0676 19 7 6.2302 -12.5500 0.0723 20 14 3.4603 -12.6068 0.0711 21 1 3.0141 -12.8272 -1.3280 22 1 3.5340 -13.9105 0.7783 23 1 2.4920 -11.7209 0.7657 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 0.8902 0.5134 26 1 -0.3633 -0.8898 0.5143 27 1 2.0553 2.1072 -0.0004 28 1 1.0821 -2.7143 0.0168 29 1 4.4715 -5.5658 0.0324 30 1 2.5623 -7.4425 0.9328 31 1 2.5626 -7.4519 -0.8471 32 1 5.0044 -7.8854 -0.8437 33 1 5.0034 -7.8758 0.9362 34 1 3.4239 -9.7877 0.9448 35 1 3.4253 -9.7968 -0.8351 36 1 6.1533 -13.5169 0.0779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340785117.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:03 Heat of formation + Delta-G solvation = -10.087014 kcal Electronic energy + Delta-G solvation = -20692.876537 eV Core-core repulsion = 17180.824394 eV Total energy + Delta-G solvation = -3512.052142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.27726 -40.95420 -38.87735 -36.55865 -35.73422 -33.98521 -33.35672 -31.83410 -31.53612 -28.59478 -27.81968 -25.69413 -23.27146 -22.44525 -21.88210 -20.78772 -19.96989 -19.10659 -18.18854 -17.99741 -16.93293 -16.76011 -16.22802 -16.05977 -15.41193 -15.00973 -14.53197 -14.32352 -13.93272 -13.90666 -13.75126 -13.64913 -12.77184 -12.75205 -12.18747 -12.04471 -12.01216 -11.99960 -11.48316 -11.16070 -10.95027 -10.25143 -10.04533 -9.84149 -9.83380 -9.66792 -9.26620 -9.24892 -9.17506 -8.58219 -6.08371 -4.07616 0.91939 1.15529 1.82393 1.98220 2.91248 3.03077 3.17949 3.28795 3.36612 3.39590 3.81746 4.16515 4.37597 4.41653 4.49846 4.76829 5.05099 5.14180 5.24062 5.25086 5.36000 5.50356 5.52812 5.81796 5.86697 6.03079 6.33779 6.41443 6.53696 6.69611 7.07538 7.16851 7.29948 7.40178 7.72119 7.79107 8.01610 8.47678 8.95629 9.53170 11.04842 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.047306 B = 0.002558 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.750692 B =10944.487964 C =11505.187166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.214 4.214 3 C -0.046 4.046 4 O 0.105 5.895 5 N -0.344 5.344 6 C 0.238 3.762 7 N -0.611 5.611 8 C 0.502 3.498 9 O -0.467 6.467 10 C 0.509 3.491 11 O -0.522 6.522 12 N -0.686 5.686 13 C 0.111 3.889 14 C -0.116 4.116 15 C -0.010 4.010 16 C -0.524 4.524 17 H 0.073 0.927 18 C 0.066 3.934 19 N -0.902 5.902 20 Si 0.881 3.119 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.265 1.265 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.220 0.780 28 H 0.434 0.566 29 H 0.414 0.586 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.020 0.980 35 H 0.015 0.985 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.389 28.324 -0.130 31.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.220 4.220 3 C -0.128 4.128 4 O 0.041 5.959 5 N -0.056 5.056 6 C -0.013 4.013 7 N -0.266 5.266 8 C 0.282 3.718 9 O -0.335 6.335 10 C 0.288 3.712 11 O -0.399 6.399 12 N -0.338 5.338 13 C -0.011 4.011 14 C -0.154 4.154 15 C -0.048 4.048 16 C -0.561 4.561 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.540 5.540 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.189 1.189 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.237 0.763 28 H 0.274 0.726 29 H 0.250 0.750 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.034 0.966 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.046 27.494 -0.127 30.018 hybrid contribution -1.668 -0.412 -0.017 1.718 sum -13.713 27.082 -0.144 30.356 Atomic orbital electron populations 1.20126 0.86805 1.03611 1.03049 1.21043 0.98611 0.90272 1.12084 1.25656 0.83228 1.00985 1.02890 1.84942 1.28390 1.14958 1.67602 1.74496 1.18625 0.90714 1.21777 1.20438 0.90115 0.86316 1.04401 1.42279 1.11887 1.00673 1.71753 1.20662 0.85839 0.87393 0.77864 1.90887 1.17112 1.82538 1.42961 1.19583 0.86506 0.85708 0.79370 1.90778 1.17461 1.82737 1.48964 1.46017 1.10265 1.06943 1.70568 1.21914 0.99731 0.76746 1.02687 1.21758 0.94648 0.96682 1.02299 1.19502 0.97882 0.90679 0.96733 1.21084 0.92930 0.90882 1.51251 0.90925 1.25034 0.96607 0.97401 0.94460 1.69910 1.28098 1.05216 1.50811 0.86766 0.85037 0.78866 0.78556 1.20244 1.21350 1.18917 0.90510 0.90379 0.91029 0.76320 0.72649 0.74954 0.90862 0.90865 0.91733 0.91701 0.96213 0.96644 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 10.47 36.01 0.38 0.07 16 2 C -0.21 -1.53 6.34 -104.23 -0.66 -2.19 16 3 C -0.05 -0.27 12.25 29.66 0.36 0.10 16 4 O 0.10 1.04 11.19 17.04 0.19 1.23 16 5 N -0.34 -4.54 10.38 31.18 0.32 -4.21 16 6 C 0.24 2.64 7.90 -154.92 -1.22 1.41 16 7 N -0.61 -6.69 5.41 -11.86 -0.06 -6.75 16 8 C 0.50 6.78 7.85 -11.62 -0.09 6.68 16 9 O -0.47 -7.52 15.25 5.49 0.08 -7.44 16 10 C 0.51 7.14 7.89 -11.62 -0.09 7.04 16 11 O -0.52 -8.03 16.48 5.49 0.09 -7.94 16 12 N -0.69 -9.64 5.55 -60.75 -0.34 -9.97 16 13 C 0.11 1.73 5.67 -4.04 -0.02 1.71 16 14 C -0.12 -2.11 5.27 -26.73 -0.14 -2.26 16 15 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 16 C -0.52 -14.64 9.66 -34.44 -0.33 -14.97 16 17 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 18 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 20 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 24 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 25 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 26 H 0.07 0.27 8.07 -51.93 -0.42 -0.15 16 27 H 0.22 0.18 8.06 -52.49 -0.42 -0.24 16 28 H 0.43 3.65 8.22 -40.82 -0.34 3.31 16 29 H 0.41 5.41 7.94 -40.82 -0.32 5.09 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 35 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 321.44 15.07 4.84 4.84 Total: -1.00 -35.12 321.44 -5.19 -40.31 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -4.39 Total: 0.94 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -2.03 Total: -0.92 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.70 Total: -47.80 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.36 Total: -14.15 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.12 -5.19 -40.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340785117.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.220 kcal (2) G-P(sol) polarization free energy of solvation -35.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds