Wall clock time and date at job start Tue Mar 31 2020 05:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35236 * 128.01956 * 2 1 4 4 O 1.34092 * 106.61480 * 179.97438 * 3 2 1 5 5 N 1.20907 * 111.75724 * 359.97438 * 4 3 2 6 6 C 1.30755 * 111.46822 * 359.73254 * 5 4 3 7 7 N 1.39358 * 126.90186 * 180.28503 * 6 5 4 8 8 C 1.34775 * 119.99823 * 0.15137 * 7 6 5 9 9 O 1.21357 * 120.00239 * 0.02562 * 8 7 6 10 10 C 1.49377 * 120.00125 * 180.02562 * 8 7 6 11 11 O 1.21360 * 119.99599 * 0.02562 * 10 8 7 12 12 N 1.34775 * 120.00125 * 179.97438 * 10 8 7 13 13 C 1.46501 * 119.99833 * 180.02562 * 12 10 8 14 14 C 1.53007 * 109.47042 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46669 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.46815 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99486 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00196 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99977 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 119.99762 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47202 * 90.00233 * 20 18 16 22 22 H 1.48500 * 109.47102 * 209.99694 * 20 18 16 23 23 H 1.48493 * 109.47457 * 330.00087 * 20 18 16 24 24 H 1.09002 * 109.47152 * 90.02657 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.02757 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.02738 * 1 2 3 27 27 H 1.07996 * 126.69877 * 359.97438 * 3 2 1 28 28 H 0.96999 * 119.99770 * 180.15629 * 7 6 5 29 29 H 0.96996 * 120.00360 * 359.97438 * 12 10 8 30 30 H 1.09000 * 109.46975 * 300.00117 * 13 12 10 31 31 H 1.08997 * 109.47116 * 60.00086 * 13 12 10 32 32 H 1.08998 * 109.46746 * 300.00078 * 14 13 12 33 33 H 1.08997 * 109.46730 * 59.99816 * 14 13 12 34 34 H 1.08998 * 109.47419 * 299.99444 * 15 14 13 35 35 H 1.08997 * 109.47875 * 60.00297 * 15 14 13 36 36 H 0.96997 * 120.00131 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3400 1.0654 0.0000 4 8 3.5884 0.5760 0.0006 5 7 3.5959 -0.6330 0.0014 6 6 2.3820 -1.1190 0.0072 7 7 2.0194 -2.4646 0.0153 8 6 2.9711 -3.4189 0.0210 9 8 4.1438 -3.1065 0.0195 10 6 2.5826 -4.8612 0.0292 11 8 1.4099 -5.1737 0.0302 12 7 3.5343 -5.8155 0.0343 13 6 3.1531 -7.2301 0.0417 14 6 4.4133 -8.0978 0.0471 15 6 4.0152 -9.5750 0.0542 16 6 5.2564 -10.4298 0.0601 17 1 6.2316 -9.9656 0.0586 18 6 5.1470 -11.8042 0.0676 19 7 6.2302 -12.5500 0.0723 20 14 3.4603 -12.6068 0.0711 21 1 3.0141 -12.8272 -1.3280 22 1 3.5340 -13.9105 0.7783 23 1 2.4920 -11.7209 0.7657 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 0.8902 0.5134 26 1 -0.3633 -0.8898 0.5143 27 1 2.0553 2.1072 -0.0004 28 1 1.0821 -2.7143 0.0168 29 1 4.4715 -5.5658 0.0324 30 1 2.5623 -7.4425 0.9328 31 1 2.5626 -7.4519 -0.8471 32 1 5.0044 -7.8854 -0.8437 33 1 5.0034 -7.8758 0.9362 34 1 3.4239 -9.7877 0.9448 35 1 3.4253 -9.7968 -0.8351 36 1 6.1533 -13.5169 0.0779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340785117.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:03 Heat of formation + Delta-G solvation = -36.526264 kcal Electronic energy + Delta-G solvation = -20694.023029 eV Core-core repulsion = 17180.824394 eV Total energy + Delta-G solvation = -3513.198634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.99986 -42.02832 -39.98435 -37.55678 -36.96798 -35.25521 -34.54539 -33.34733 -32.62531 -29.46466 -28.98234 -26.93941 -24.70820 -23.12679 -22.93114 -22.31293 -21.04771 -20.04993 -19.18904 -18.76762 -18.75510 -17.94229 -17.35082 -16.95739 -16.62199 -16.28466 -16.13389 -15.22758 -15.13328 -15.00499 -14.78453 -14.13221 -14.11258 -13.83743 -13.68131 -13.23799 -13.05051 -12.91777 -12.77238 -12.71997 -12.16887 -11.92624 -11.79793 -11.62308 -11.34960 -10.97185 -10.76182 -10.39982 -10.36804 -10.02882 -8.29004 -6.33818 -0.10768 0.61466 0.85241 1.19090 1.38352 1.40028 1.51830 1.98054 2.17146 2.37143 2.50920 3.04105 3.06721 3.26219 3.71753 3.96958 4.04019 4.14755 4.27647 4.44936 4.74899 4.80845 4.83168 4.84002 4.92444 4.97203 4.99610 5.08732 5.32294 5.44030 5.53879 5.58498 5.65369 6.04856 6.26999 6.38646 6.67139 6.74836 7.30933 7.36656 8.87668 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.047306 B = 0.002558 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.750692 B =10944.487964 C =11505.187166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.215 4.215 3 C -0.028 4.028 4 O 0.095 5.905 5 N -0.394 5.394 6 C 0.209 3.791 7 N -0.597 5.597 8 C 0.505 3.495 9 O -0.499 6.499 10 C 0.516 3.484 11 O -0.534 6.534 12 N -0.684 5.684 13 C 0.124 3.876 14 C -0.106 4.106 15 C -0.010 4.010 16 C -0.534 4.534 17 H 0.033 0.967 18 C 0.001 3.999 19 N -0.953 5.953 20 Si 0.952 3.048 21 H -0.267 1.267 22 H -0.287 1.287 23 H -0.242 1.242 24 H 0.085 0.915 25 H 0.102 0.898 26 H 0.071 0.929 27 H 0.272 0.728 28 H 0.444 0.556 29 H 0.419 0.581 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.027 0.973 35 H 0.026 0.974 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.536 30.295 -0.129 34.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.221 4.221 3 C -0.108 4.108 4 O 0.032 5.968 5 N -0.107 5.107 6 C -0.040 4.040 7 N -0.253 5.253 8 C 0.286 3.714 9 O -0.370 6.370 10 C 0.296 3.704 11 O -0.412 6.412 12 N -0.336 5.336 13 C 0.002 3.998 14 C -0.144 4.144 15 C -0.048 4.048 16 C -0.572 4.572 17 H 0.051 0.949 18 C -0.196 4.196 19 N -0.593 5.593 20 Si 0.775 3.225 21 H -0.192 1.192 22 H -0.213 1.213 23 H -0.165 1.165 24 H 0.104 0.896 25 H 0.121 0.879 26 H 0.089 0.911 27 H 0.287 0.713 28 H 0.286 0.714 29 H 0.256 0.744 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.227 29.505 -0.127 33.203 hybrid contribution -0.637 -0.878 -0.020 1.085 sum -15.864 28.628 -0.147 32.730 Atomic orbital electron populations 1.20263 0.84380 1.04840 1.03999 1.21481 1.00088 0.88870 1.11699 1.26653 0.81238 1.02841 1.00086 1.84872 1.30437 1.13933 1.67533 1.74489 1.20397 0.92234 1.23580 1.20922 0.90925 0.86769 1.05374 1.42141 1.11938 1.00673 1.70525 1.20495 0.85759 0.87413 0.77728 1.90878 1.18338 1.82857 1.44942 1.19594 0.86131 0.85893 0.78790 1.90769 1.17845 1.82965 1.49574 1.45892 1.10673 1.06464 1.70571 1.21636 0.98004 0.77010 1.03195 1.21536 0.95951 0.94661 1.02249 1.19456 0.95573 0.92478 0.97311 1.21483 0.93498 0.91778 1.50423 0.94891 1.26062 1.01152 0.98221 0.94140 1.70074 1.30946 1.05656 1.52650 0.85626 0.79784 0.77842 0.79216 1.19176 1.21267 1.16507 0.89608 0.87948 0.91052 0.71268 0.71362 0.74434 0.90401 0.90332 0.91884 0.91890 0.95490 0.95603 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.47 71.24 0.75 0.39 16 2 C -0.22 -2.58 6.34 -19.61 -0.12 -2.70 16 3 C -0.03 -0.24 12.25 67.13 0.82 0.58 16 4 O 0.10 1.80 11.19 71.16 0.80 2.60 16 5 N -0.39 -10.39 10.38 -56.34 -0.59 -10.98 16 6 C 0.21 4.49 7.90 134.15 1.06 5.55 16 7 N -0.60 -12.73 5.41 -310.82 -1.68 -14.41 16 8 C 0.51 13.56 7.85 87.25 0.68 14.25 16 9 O -0.50 -16.39 15.25 -3.27 -0.05 -16.44 16 10 C 0.52 13.99 7.89 87.25 0.69 14.68 16 11 O -0.53 -15.60 16.48 -3.28 -0.05 -15.66 16 12 N -0.68 -18.57 5.55 -464.47 -2.58 -21.14 16 13 C 0.12 3.65 5.67 86.38 0.49 4.14 16 14 C -0.11 -3.79 5.27 30.60 0.16 -3.62 16 15 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 16 C -0.53 -30.31 9.66 25.60 0.25 -30.07 16 17 H 0.03 2.06 7.99 -2.91 -0.02 2.04 16 18 C 0.00 0.05 5.47 84.65 0.46 0.51 16 19 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 20 Si 0.95 43.68 27.47 68.60 1.88 45.57 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.24 -10.13 6.54 99.48 0.65 -9.47 16 24 H 0.09 0.27 8.14 -2.39 -0.02 0.26 16 25 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 26 H 0.07 0.35 8.07 -2.38 -0.02 0.33 16 27 H 0.27 -0.87 8.06 -2.91 -0.02 -0.89 16 28 H 0.44 7.00 8.22 -92.71 -0.76 6.24 16 29 H 0.42 10.80 7.94 -92.71 -0.74 10.07 16 30 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 33 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.03 1.16 7.20 -2.39 -0.02 1.15 16 35 H 0.03 1.10 7.57 -2.39 -0.02 1.08 16 36 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -78.43 321.44 2.97 -75.47 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -0.42 Total: 11.19 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 5.36 Total: 3.38 kcal Atomic # 7 Polarization: -101.56 SS G_CDS: -4.54 Total: -106.10 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: 0.69 Total: -29.49 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.88 Total: 45.57 kcal Total: -78.43 2.97 -75.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340785117.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.939 kcal (2) G-P(sol) polarization free energy of solvation -78.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds