Wall clock time and date at job start Tue Mar 31 2020 05:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.47282 * 2 1 4 4 O 1.34240 * 126.82822 * 270.02594 * 3 2 1 5 5 N 1.20889 * 111.66168 * 179.97438 * 4 3 2 6 6 C 1.30155 * 111.78002 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.81435 * 180.02562 * 6 5 4 8 8 C 1.35997 * 126.83349 * 89.96508 * 3 2 1 9 9 N 1.40409 * 128.07536 * 0.07457 * 8 3 2 10 10 C 1.34772 * 120.00134 * 210.46980 * 9 8 3 11 11 O 1.21409 * 119.99823 * 4.92404 * 10 9 8 12 12 C 1.49323 * 120.00248 * 184.92285 * 10 9 8 13 13 O 1.21355 * 119.99711 * 0.02562 * 12 10 9 14 14 N 1.34780 * 120.00055 * 179.97438 * 12 10 9 15 15 C 1.46498 * 119.99827 * 179.97438 * 14 12 10 16 16 C 1.50703 * 109.46948 * 180.02562 * 15 14 12 17 17 H 1.07996 * 119.99621 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99720 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00355 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99863 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.47085 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47279 * 119.99873 * 20 18 16 23 23 H 1.48498 * 109.47158 * 240.00274 * 20 18 16 24 24 H 1.08997 * 109.47012 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46920 * 300.00172 * 1 2 3 26 26 H 1.09006 * 109.47023 * 60.00196 * 1 2 3 27 27 H 1.09000 * 109.46920 * 239.99828 * 2 1 3 28 28 H 1.09001 * 109.46555 * 119.99736 * 2 1 3 29 29 H 1.09004 * 109.46855 * 84.37622 * 7 6 5 30 30 H 1.08998 * 109.46830 * 204.37227 * 7 6 5 31 31 H 1.08997 * 109.47182 * 324.37771 * 7 6 5 32 32 H 0.97001 * 119.99976 * 30.45883 * 9 8 3 33 33 H 0.96999 * 119.99743 * 0.02562 * 14 12 10 34 34 H 1.08996 * 109.47250 * 300.00650 * 15 14 12 35 35 H 1.09008 * 109.46770 * 60.00109 * 15 14 12 36 36 H 0.96999 * 120.00417 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.3002 2.1795 -1.0745 5 7 2.6888 3.2797 -0.7582 6 6 2.7384 3.4212 0.5347 7 6 3.1716 4.6494 1.2927 8 6 2.3036 2.1896 1.0885 9 7 2.1823 1.8448 2.4442 10 6 1.8887 2.7920 3.3568 11 8 1.6412 3.9250 2.9976 12 6 1.8679 2.4480 4.8097 13 8 2.1157 1.3156 5.1687 14 7 1.5748 3.3955 5.7224 15 6 1.5538 3.0578 7.1478 16 6 1.2011 4.2842 7.9494 17 1 1.0111 5.2213 7.4472 18 6 1.1209 4.2099 9.3238 19 7 1.3518 3.0687 9.9353 20 14 0.6829 5.7299 10.3174 21 1 0.4719 6.8777 9.3991 22 1 -0.5612 5.4763 11.0875 23 1 1.7904 6.0442 11.2554 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.3284 5.3336 1.3882 30 1 3.5192 4.3604 2.2846 31 1 3.9805 5.1427 0.7537 32 1 2.3096 0.9247 2.7238 33 1 1.3771 4.3007 5.4354 34 1 0.8102 2.2811 7.3263 35 1 2.5368 2.6960 7.4500 36 1 1.2957 3.0165 10.9022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344017768.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:48 Heat of formation + Delta-G solvation = -16.483203 kcal Electronic energy + Delta-G solvation = -21651.243936 eV Core-core repulsion = 18138.914434 eV Total energy + Delta-G solvation = -3512.329502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.07659 -40.50641 -38.27690 -36.17844 -34.73908 -34.50180 -33.34529 -32.42931 -29.98669 -28.63099 -27.85507 -25.30895 -24.18877 -23.00569 -21.62017 -20.78173 -19.82188 -18.57368 -17.90785 -17.72292 -16.49050 -16.25455 -15.82320 -15.52741 -15.15458 -14.85074 -14.34462 -14.10821 -13.93949 -13.40008 -13.19775 -13.11894 -12.82185 -12.61398 -12.12688 -12.02246 -11.97217 -11.72053 -11.51648 -11.32777 -11.03899 -10.98524 -10.79816 -10.37328 -9.76303 -9.52062 -9.24776 -8.89604 -8.64183 -8.18921 -6.27105 -4.34678 1.08188 1.61389 2.16429 2.34347 3.00185 3.19519 3.27374 3.31026 3.54034 3.88896 4.18078 4.19128 4.27929 4.61893 4.80897 4.86004 4.93320 4.99631 5.10023 5.38992 5.42730 5.49817 5.60642 5.66793 5.75849 5.88244 6.14565 6.18071 6.84184 7.00110 7.08706 7.29435 7.48402 7.73076 7.81028 8.11898 8.28862 8.47643 8.76256 9.32044 10.82954 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030063 B = 0.003516 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.157613 B = 7962.614814 C = 8563.594724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.038 4.038 3 C -0.056 4.056 4 O 0.106 5.894 5 N -0.359 5.359 6 C 0.037 3.963 7 C -0.061 4.061 8 C 0.040 3.960 9 N -0.618 5.618 10 C 0.506 3.494 11 O -0.496 6.496 12 C 0.494 3.506 13 O -0.535 6.535 14 N -0.668 5.668 15 C 0.246 3.754 16 C -0.547 4.547 17 H 0.067 0.933 18 C 0.066 3.934 19 N -0.885 5.885 20 Si 0.906 3.094 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.281 1.281 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.426 0.574 33 H 0.405 0.595 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.967 -4.693 -18.570 19.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.076 4.076 3 C -0.123 4.123 4 O 0.043 5.957 5 N -0.066 5.066 6 C -0.124 4.124 7 C -0.118 4.118 8 C -0.059 4.059 9 N -0.269 5.269 10 C 0.289 3.711 11 O -0.369 6.369 12 C 0.272 3.728 13 O -0.414 6.414 14 N -0.317 5.317 15 C 0.126 3.874 16 C -0.585 4.585 17 H 0.085 0.915 18 C -0.138 4.138 19 N -0.522 5.522 20 Si 0.733 3.267 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.207 1.207 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.265 0.735 33 H 0.240 0.760 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.255 -3.926 -19.306 19.741 hybrid contribution -0.348 0.383 1.395 1.488 sum 0.907 -3.543 -17.911 18.281 Atomic orbital electron populations 1.21797 0.93324 1.02799 1.02984 1.20076 0.96815 0.86051 1.04666 1.23933 1.05401 0.97635 0.85347 1.84834 1.62126 1.17343 1.31445 1.73802 1.17765 0.99528 1.15469 1.23459 1.01522 0.97747 0.89659 1.20260 1.01607 0.91831 0.98100 1.18098 1.07099 0.95229 0.85471 1.42376 1.68990 1.13372 1.02179 1.20951 0.77224 0.84899 0.88060 1.90802 1.44476 1.20263 1.81316 1.19549 0.81162 0.86571 0.85486 1.90742 1.49516 1.20281 1.80855 1.46428 1.63990 1.12283 1.09030 1.19377 0.98440 0.97424 0.72137 1.21229 1.49980 0.95523 0.91796 0.91468 1.24934 0.94641 0.96700 0.97562 1.69967 1.47664 1.24765 1.09787 0.86311 0.78178 0.82273 0.79914 1.19482 1.20702 1.20705 0.91092 0.92059 0.91976 0.89041 0.88783 0.89089 0.90254 0.91578 0.73530 0.76027 0.94642 0.94626 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.90 37.16 0.37 -0.69 16 2 C -0.04 -0.26 6.50 -27.88 -0.18 -0.45 16 3 C -0.06 -0.61 6.77 -35.12 -0.24 -0.85 16 4 O 0.11 1.30 11.20 16.65 0.19 1.49 16 5 N -0.36 -5.07 12.06 33.58 0.40 -4.66 16 6 C 0.04 0.52 7.02 -81.92 -0.58 -0.06 16 7 C -0.06 -0.80 8.43 36.01 0.30 -0.50 16 8 C 0.04 0.52 6.79 -83.35 -0.57 -0.05 16 9 N -0.62 -8.07 5.45 -10.09 -0.05 -8.13 16 10 C 0.51 7.98 7.20 -11.65 -0.08 7.90 16 11 O -0.50 -8.26 11.98 5.45 0.07 -8.19 16 12 C 0.49 9.28 7.88 -11.64 -0.09 9.19 16 13 O -0.53 -11.15 16.48 5.49 0.09 -11.06 16 14 N -0.67 -13.66 5.54 -61.95 -0.34 -14.00 16 15 C 0.25 6.15 5.43 -5.19 -0.03 6.12 16 16 C -0.55 -14.32 9.28 -34.44 -0.32 -14.64 16 17 H 0.07 1.67 7.60 -52.49 -0.40 1.27 16 18 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.88 -25.02 13.29 55.43 0.74 -24.28 16 20 Si 0.91 20.34 29.54 -169.99 -5.02 15.32 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.55 8.02 -51.93 -0.42 0.13 16 29 H 0.09 1.25 7.49 -51.93 -0.39 0.86 16 30 H 0.08 1.10 6.34 -51.93 -0.33 0.77 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.43 4.79 8.18 -40.82 -0.33 4.45 16 33 H 0.40 7.63 7.79 -40.82 -0.32 7.31 16 34 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.04 0.97 8.14 -51.92 -0.42 0.54 16 36 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 318.23 15.07 4.80 4.80 Total: -1.00 -30.34 318.23 -4.93 -35.27 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -4.28 Total: 5.81 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -1.51 Total: 7.64 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 0.74 Total: -51.07 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.34 Total: -17.76 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.34 -4.93 -35.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344017768.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.788 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds