Wall clock time and date at job start Tue Mar 31 2020 05:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.47282 * 2 1 4 4 O 1.34240 * 126.82822 * 270.02594 * 3 2 1 5 5 N 1.20889 * 111.66168 * 179.97438 * 4 3 2 6 6 C 1.30155 * 111.78002 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.81435 * 180.02562 * 6 5 4 8 8 C 1.35997 * 126.83349 * 89.96508 * 3 2 1 9 9 N 1.40409 * 128.07536 * 0.07457 * 8 3 2 10 10 C 1.34772 * 120.00134 * 210.46980 * 9 8 3 11 11 O 1.21409 * 119.99823 * 4.92404 * 10 9 8 12 12 C 1.49323 * 120.00248 * 184.92285 * 10 9 8 13 13 O 1.21355 * 119.99711 * 0.02562 * 12 10 9 14 14 N 1.34780 * 120.00055 * 179.97438 * 12 10 9 15 15 C 1.46498 * 119.99827 * 179.97438 * 14 12 10 16 16 C 1.50703 * 109.46948 * 180.02562 * 15 14 12 17 17 H 1.07996 * 119.99621 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99720 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00355 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99863 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.47085 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47279 * 119.99873 * 20 18 16 23 23 H 1.48498 * 109.47158 * 240.00274 * 20 18 16 24 24 H 1.08997 * 109.47012 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46920 * 300.00172 * 1 2 3 26 26 H 1.09006 * 109.47023 * 60.00196 * 1 2 3 27 27 H 1.09000 * 109.46920 * 239.99828 * 2 1 3 28 28 H 1.09001 * 109.46555 * 119.99736 * 2 1 3 29 29 H 1.09004 * 109.46855 * 84.37622 * 7 6 5 30 30 H 1.08998 * 109.46830 * 204.37227 * 7 6 5 31 31 H 1.08997 * 109.47182 * 324.37771 * 7 6 5 32 32 H 0.97001 * 119.99976 * 30.45883 * 9 8 3 33 33 H 0.96999 * 119.99743 * 0.02562 * 14 12 10 34 34 H 1.08996 * 109.47250 * 300.00650 * 15 14 12 35 35 H 1.09008 * 109.46770 * 60.00109 * 15 14 12 36 36 H 0.96999 * 120.00417 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.3002 2.1795 -1.0745 5 7 2.6888 3.2797 -0.7582 6 6 2.7384 3.4212 0.5347 7 6 3.1716 4.6494 1.2927 8 6 2.3036 2.1896 1.0885 9 7 2.1823 1.8448 2.4442 10 6 1.8887 2.7920 3.3568 11 8 1.6412 3.9250 2.9976 12 6 1.8679 2.4480 4.8097 13 8 2.1157 1.3156 5.1687 14 7 1.5748 3.3955 5.7224 15 6 1.5538 3.0578 7.1478 16 6 1.2011 4.2842 7.9494 17 1 1.0111 5.2213 7.4472 18 6 1.1209 4.2099 9.3238 19 7 1.3518 3.0687 9.9353 20 14 0.6829 5.7299 10.3174 21 1 0.4719 6.8777 9.3991 22 1 -0.5612 5.4763 11.0875 23 1 1.7904 6.0442 11.2554 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.3284 5.3336 1.3882 30 1 3.5192 4.3604 2.2846 31 1 3.9805 5.1427 0.7537 32 1 2.3096 0.9247 2.7238 33 1 1.3771 4.3007 5.4354 34 1 0.8102 2.2811 7.3263 35 1 2.5368 2.6960 7.4500 36 1 1.2957 3.0165 10.9022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344017768.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:47 Heat of formation + Delta-G solvation = -38.476031 kcal Electronic energy + Delta-G solvation = -21652.197617 eV Core-core repulsion = 18138.914434 eV Total energy + Delta-G solvation = -3513.283183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.09926 -41.87613 -39.78838 -37.32023 -36.28110 -35.55495 -34.53395 -34.22068 -30.89923 -29.74168 -29.67457 -26.78362 -24.95479 -24.60979 -23.01898 -21.85743 -21.19930 -19.96249 -19.02212 -18.79711 -18.25305 -17.51636 -17.20565 -16.87801 -16.81689 -16.02668 -15.72926 -15.37273 -15.00816 -14.72005 -14.33555 -14.10014 -14.07570 -13.99752 -13.63254 -13.55030 -13.00812 -12.82873 -12.77237 -12.76377 -12.44187 -12.24565 -12.14666 -11.74735 -11.49792 -10.85410 -10.78603 -10.74637 -10.06413 -9.66320 -8.31395 -6.47019 -0.03802 0.44325 0.96909 1.16786 1.44565 1.45452 1.58693 2.01044 2.10363 2.36457 2.64301 3.04523 3.16564 3.25398 3.43367 3.70970 4.07811 4.26512 4.29759 4.40363 4.62051 4.66423 4.81531 4.97995 5.00499 5.05869 5.08184 5.11433 5.18227 5.25041 5.34540 5.50309 5.76765 5.81859 6.39908 6.57368 6.69146 6.98203 7.13902 7.26056 8.80347 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030063 B = 0.003516 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.157613 B = 7962.614814 C = 8563.594724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.040 4.040 3 C -0.026 4.026 4 O 0.109 5.891 5 N -0.377 5.377 6 C 0.020 3.980 7 C -0.057 4.057 8 C 0.011 3.989 9 N -0.599 5.599 10 C 0.517 3.483 11 O -0.504 6.504 12 C 0.499 3.501 13 O -0.555 6.555 14 N -0.671 5.671 15 C 0.263 3.737 16 C -0.561 4.561 17 H 0.080 0.920 18 C 0.012 3.988 19 N -0.925 5.925 20 Si 0.980 3.020 21 H -0.258 1.258 22 H -0.278 1.278 23 H -0.278 1.278 24 H 0.092 0.908 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.119 0.881 28 H 0.111 0.889 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.435 0.565 33 H 0.414 0.586 34 H 0.007 0.993 35 H 0.007 0.993 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.638 -4.650 -19.825 20.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.078 4.078 3 C -0.093 4.093 4 O 0.046 5.954 5 N -0.084 5.084 6 C -0.140 4.140 7 C -0.115 4.115 8 C -0.088 4.088 9 N -0.251 5.251 10 C 0.299 3.701 11 O -0.378 6.378 12 C 0.279 3.721 13 O -0.435 6.435 14 N -0.321 5.321 15 C 0.141 3.859 16 C -0.598 4.598 17 H 0.098 0.902 18 C -0.189 4.189 19 N -0.563 5.563 20 Si 0.804 3.196 21 H -0.182 1.182 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.111 0.889 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.137 0.863 28 H 0.129 0.871 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.276 0.724 33 H 0.250 0.750 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.932 -3.894 -20.619 21.004 hybrid contribution -0.238 0.245 1.658 1.692 sum 0.695 -3.649 -18.961 19.321 Atomic orbital electron populations 1.21800 0.93078 1.03960 1.01972 1.20396 0.96800 0.83698 1.06897 1.24620 1.02221 0.98395 0.84069 1.84824 1.61638 1.17074 1.31849 1.73796 1.18729 1.00369 1.15462 1.23683 1.01891 0.98425 0.89985 1.20200 1.01759 0.91711 0.97784 1.18163 1.09418 0.95749 0.85427 1.42065 1.67808 1.13159 1.02034 1.20114 0.78009 0.85226 0.86726 1.90815 1.45351 1.20627 1.80985 1.19985 0.79624 0.85742 0.86787 1.90726 1.49922 1.21131 1.81714 1.46135 1.65032 1.13192 1.07694 1.18851 0.95828 0.96522 0.74681 1.21594 1.49717 0.96150 0.92375 0.90226 1.25918 0.94286 0.99850 0.98814 1.70093 1.48747 1.27146 1.10292 0.85173 0.77819 0.78450 0.78195 1.18200 1.20321 1.20330 0.88901 0.93924 0.92151 0.86268 0.87120 0.89812 0.91139 0.90158 0.72420 0.74981 0.97516 0.97532 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.90 71.98 0.71 -0.99 16 2 C -0.04 -0.43 6.50 29.85 0.19 -0.23 16 3 C -0.03 -0.50 6.77 25.16 0.17 -0.33 16 4 O 0.11 2.48 11.20 69.76 0.78 3.26 16 5 N -0.38 -10.18 12.06 -48.88 -0.59 -10.77 16 6 C 0.02 0.55 7.02 43.70 0.31 0.86 16 7 C -0.06 -1.49 8.43 71.24 0.60 -0.89 16 8 C 0.01 0.27 6.79 38.14 0.26 0.52 16 9 N -0.60 -14.97 5.45 -304.17 -1.66 -16.63 16 10 C 0.52 16.07 7.20 87.23 0.63 16.70 16 11 O -0.50 -16.55 11.98 -3.43 -0.04 -16.59 16 12 C 0.50 18.87 7.88 87.23 0.69 19.55 16 13 O -0.56 -23.39 16.48 -3.26 -0.05 -23.44 16 14 N -0.67 -27.83 5.54 -468.27 -2.59 -30.42 16 15 C 0.26 13.54 5.43 85.63 0.46 14.01 16 16 C -0.56 -29.55 9.28 25.60 0.24 -29.32 16 17 H 0.08 3.91 7.60 -2.91 -0.02 3.89 16 18 C 0.01 0.63 5.46 84.66 0.46 1.09 16 19 N -0.92 -53.16 13.29 21.45 0.28 -52.88 16 20 Si 0.98 41.40 29.54 68.60 2.03 43.43 16 21 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 22 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 23 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 24 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.11 0.90 8.02 -2.39 -0.02 0.88 16 29 H 0.08 2.28 7.49 -2.38 -0.02 2.26 16 30 H 0.07 1.94 6.34 -2.39 -0.02 1.92 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.43 9.14 8.18 -92.71 -0.76 8.38 16 33 H 0.41 15.63 7.79 -92.71 -0.72 14.91 16 34 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 36 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -65.69 318.23 2.54 -63.15 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -0.34 Total: 19.94 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: 4.72 Total: 20.97 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -4.56 Total: -110.70 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: 0.69 Total: -36.78 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -65.69 2.54 -63.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344017768.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.670 kcal (2) G-P(sol) polarization free energy of solvation -65.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds