Wall clock time and date at job start Tue Mar 31 2020 05:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 O 1.34257 * 126.52238 * 60.02690 * 4 2 1 6 6 C 1.34049 * 108.22518 * 180.02562 * 5 4 2 7 7 N 1.29939 * 109.24565 * 359.97438 * 6 5 4 8 8 C 1.36077 * 108.47339 * 359.73874 * 7 6 5 9 9 C 1.47413 * 126.44657 * 180.30089 * 8 7 6 10 10 O 1.21613 * 119.99646 * 180.14337 * 9 8 7 11 11 N 1.34779 * 120.00488 * 0.14149 * 9 8 7 12 12 C 1.46492 * 120.00059 * 179.97438 * 11 9 8 13 13 C 1.50708 * 109.46994 * 180.02562 * 12 11 9 14 14 O 1.21294 * 119.99772 * 0.02562 * 13 12 11 15 15 N 1.34772 * 119.99941 * 179.97438 * 13 12 11 16 16 C 1.37099 * 120.00124 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99679 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00271 * 180.02562 * 16 15 13 19 19 N 1.31416 * 119.99854 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99997 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46890 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47199 * 120.00021 * 20 18 16 23 23 H 1.48499 * 109.47016 * 239.99928 * 20 18 16 24 24 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 25 25 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 26 26 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 28 28 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 29 29 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 31 31 H 1.08001 * 125.38296 * 180.02562 * 6 5 4 32 32 H 0.97004 * 119.99669 * 0.02562 * 11 9 8 33 33 H 1.09003 * 109.47682 * 299.99812 * 12 11 9 34 34 H 1.09003 * 109.47386 * 60.00437 * 12 11 9 35 35 H 0.97006 * 120.00411 * 0.02562 * 15 13 12 36 36 H 0.96995 * 119.99486 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.7904 -0.3674 -2.5058 6 6 2.4124 -1.2483 -3.3021 7 7 3.0317 -2.1249 -2.5696 8 6 2.8225 -1.8180 -1.2605 9 6 3.3497 -2.5496 -0.0944 10 8 3.0855 -2.1715 1.0309 11 7 4.1245 -3.6375 -0.2752 12 6 4.6488 -4.3642 0.8837 13 6 5.4786 -5.5304 0.4119 14 8 5.6186 -5.7341 -0.7756 15 7 6.0660 -6.3464 1.3095 16 6 6.8204 -7.4076 0.8804 17 1 6.9437 -7.5900 -0.1769 18 6 7.4256 -8.2492 1.8058 19 7 7.2743 -8.0281 3.0923 20 14 8.4541 -9.6947 1.2210 21 1 8.4671 -9.7244 -0.2636 22 1 9.8431 -9.5503 1.7259 23 1 7.8692 -10.9588 1.7359 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 0.8900 28 1 1.6768 1.9562 0.8901 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 2.4014 -1.2317 -4.3819 32 1 4.3355 -3.9389 -1.1728 33 1 5.2686 -3.6960 1.4816 34 1 3.8193 -4.7294 1.4893 35 1 5.9543 -6.1832 2.2592 36 1 7.6964 -8.6158 3.7383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346131637.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:21 Heat of formation + Delta-G solvation = -63.111861 kcal Electronic energy + Delta-G solvation = -21301.992822 eV Core-core repulsion = 17787.641349 eV Total energy + Delta-G solvation = -3514.351472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.57674 -39.46794 -38.09089 -35.93432 -34.86379 -34.41718 -33.63076 -31.36649 -29.93639 -27.84065 -27.45178 -24.88449 -23.55197 -23.46164 -20.80138 -20.32232 -19.55027 -18.34411 -17.87857 -16.91160 -16.47476 -15.75302 -15.55069 -15.20018 -15.12919 -14.85407 -14.42697 -13.96049 -13.81492 -13.81025 -13.41783 -13.30903 -12.49114 -12.18990 -12.01315 -11.95444 -11.62406 -11.53853 -11.40439 -11.32407 -11.12862 -10.80307 -10.39184 -10.30941 -9.90671 -9.63099 -9.12990 -8.76622 -8.61331 -8.08338 -6.50059 -3.91762 1.01307 1.99079 2.41342 3.11611 3.22463 3.26144 3.33175 3.37847 3.75888 3.95200 4.13298 4.32805 4.62122 4.80826 4.86984 4.93068 5.05570 5.18353 5.32706 5.33787 5.51952 5.52349 5.62542 5.78187 5.84282 5.93669 5.94385 5.98843 6.05977 6.12418 6.65311 7.31670 7.48108 7.82278 7.93736 8.35057 8.47399 9.06562 9.40753 9.89025 10.67006 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036826 B = 0.003147 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.149518 B = 8895.480170 C = 9464.566409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.030 4.030 3 C -0.146 4.146 4 C 0.049 3.951 5 O -0.199 6.199 6 C 0.170 3.830 7 N -0.457 5.457 8 C -0.070 4.070 9 C 0.599 3.401 10 O -0.545 6.545 11 N -0.687 5.687 12 C 0.108 3.892 13 C 0.428 3.572 14 O -0.593 6.593 15 N -0.550 5.550 16 C -0.304 4.304 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.895 5.895 20 Si 0.932 3.068 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.137 0.863 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.255 0.745 32 H 0.420 0.580 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.396 0.604 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.837 16.577 -6.357 21.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.048 4.048 3 C -0.203 4.203 4 C -0.007 4.007 5 O -0.085 6.085 6 C -0.059 4.059 7 N -0.186 5.186 8 C -0.190 4.190 9 C 0.385 3.615 10 O -0.424 6.424 11 N -0.339 5.339 12 C -0.020 4.020 13 C 0.213 3.787 14 O -0.479 6.479 15 N -0.185 5.185 16 C -0.433 4.433 17 H 0.124 0.876 18 C -0.178 4.178 19 N -0.536 5.536 20 Si 0.759 3.241 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.154 0.846 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.270 0.730 32 H 0.260 0.740 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.230 0.770 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.464 16.045 -6.417 20.738 hybrid contribution 0.271 -0.378 -0.103 0.476 sum -11.193 15.667 -6.521 20.329 Atomic orbital electron populations 1.21851 0.93208 1.02660 1.02590 1.20343 0.96691 0.96386 0.91424 1.21850 1.01734 0.94135 1.02585 1.23765 0.97267 0.95591 0.84113 1.84342 1.59176 1.48809 1.16177 1.28033 0.93537 0.85449 0.98863 1.70822 1.20797 1.25557 1.01394 1.21483 1.06098 0.99337 0.92047 1.16655 0.78555 0.80130 0.86208 1.90711 1.60464 1.67991 1.23231 1.45524 1.49256 1.27287 1.11861 1.21032 0.98645 0.94072 0.88233 1.19717 0.85798 0.85979 0.87164 1.90524 1.66158 1.74849 1.16346 1.41787 1.43420 1.24792 1.08470 1.19790 1.25303 1.03325 0.94880 0.87608 1.25322 0.98148 0.99417 0.94865 1.69624 1.44227 1.39194 1.00511 0.85756 0.79003 0.80170 0.79162 1.19113 1.20623 1.20630 0.91112 0.92332 0.92099 0.84587 0.91111 0.92096 0.92334 0.72968 0.74017 0.89499 0.89490 0.77037 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.18 37.16 0.34 -0.91 16 2 C -0.03 -0.32 3.24 -91.77 -0.30 -0.62 16 3 C -0.15 -1.25 9.18 37.16 0.34 -0.91 16 4 C 0.05 0.62 5.95 -35.08 -0.21 0.41 16 5 O -0.20 -2.14 10.73 6.51 0.07 -2.07 16 6 C 0.17 1.68 13.19 51.96 0.69 2.37 16 7 N -0.46 -6.49 11.06 -11.48 -0.13 -6.61 16 8 C -0.07 -1.06 6.99 -83.02 -0.58 -1.64 16 9 C 0.60 10.39 7.81 -12.52 -0.10 10.29 16 10 O -0.54 -9.87 14.47 5.27 0.08 -9.80 16 11 N -0.69 -12.67 5.52 -62.56 -0.35 -13.02 16 12 C 0.11 2.04 6.15 -5.19 -0.03 2.01 16 13 C 0.43 10.08 7.85 -10.98 -0.09 9.99 16 14 O -0.59 -15.76 15.24 5.55 0.08 -15.68 16 15 N -0.55 -13.79 5.29 -10.96 -0.06 -13.85 16 16 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 17 H 0.11 3.04 7.16 -52.49 -0.38 2.67 16 18 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 19 N -0.90 -24.01 13.05 55.50 0.72 -23.29 16 20 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.14 1.71 5.52 -51.93 -0.29 1.42 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.25 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.42 8.16 7.17 -40.82 -0.29 7.87 16 33 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.40 9.48 7.90 -40.82 -0.32 9.16 16 36 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 320.19 15.07 4.83 4.83 Total: -1.00 -32.44 320.19 -4.17 -36.61 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -4.22 Total: 14.10 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: -0.18 Total: 13.09 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.19 Total: -56.77 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: 0.23 Total: -27.54 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.44 -4.17 -36.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346131637.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.505 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds