Wall clock time and date at job start Tue Mar 31 2020 05:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 O 1.34257 * 126.52238 * 60.02690 * 4 2 1 6 6 C 1.34049 * 108.22518 * 180.02562 * 5 4 2 7 7 N 1.29939 * 109.24565 * 359.97438 * 6 5 4 8 8 C 1.36077 * 108.47339 * 359.73874 * 7 6 5 9 9 C 1.47413 * 126.44657 * 180.30089 * 8 7 6 10 10 O 1.21613 * 119.99646 * 180.14337 * 9 8 7 11 11 N 1.34779 * 120.00488 * 0.14149 * 9 8 7 12 12 C 1.46492 * 120.00059 * 179.97438 * 11 9 8 13 13 C 1.50708 * 109.46994 * 180.02562 * 12 11 9 14 14 O 1.21294 * 119.99772 * 0.02562 * 13 12 11 15 15 N 1.34772 * 119.99941 * 179.97438 * 13 12 11 16 16 C 1.37099 * 120.00124 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99679 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00271 * 180.02562 * 16 15 13 19 19 N 1.31416 * 119.99854 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99997 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46890 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47199 * 120.00021 * 20 18 16 23 23 H 1.48499 * 109.47016 * 239.99928 * 20 18 16 24 24 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 25 25 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 26 26 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 28 28 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 29 29 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 31 31 H 1.08001 * 125.38296 * 180.02562 * 6 5 4 32 32 H 0.97004 * 119.99669 * 0.02562 * 11 9 8 33 33 H 1.09003 * 109.47682 * 299.99812 * 12 11 9 34 34 H 1.09003 * 109.47386 * 60.00437 * 12 11 9 35 35 H 0.97006 * 120.00411 * 0.02562 * 15 13 12 36 36 H 0.96995 * 119.99486 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.7904 -0.3674 -2.5058 6 6 2.4124 -1.2483 -3.3021 7 7 3.0317 -2.1249 -2.5696 8 6 2.8225 -1.8180 -1.2605 9 6 3.3497 -2.5496 -0.0944 10 8 3.0855 -2.1715 1.0309 11 7 4.1245 -3.6375 -0.2752 12 6 4.6488 -4.3642 0.8837 13 6 5.4786 -5.5304 0.4119 14 8 5.6186 -5.7341 -0.7756 15 7 6.0660 -6.3464 1.3095 16 6 6.8204 -7.4076 0.8804 17 1 6.9437 -7.5900 -0.1769 18 6 7.4256 -8.2492 1.8058 19 7 7.2743 -8.0281 3.0923 20 14 8.4541 -9.6947 1.2210 21 1 8.4671 -9.7244 -0.2636 22 1 9.8431 -9.5503 1.7259 23 1 7.8692 -10.9588 1.7359 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 0.8900 28 1 1.6768 1.9562 0.8901 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 2.4014 -1.2317 -4.3819 32 1 4.3355 -3.9389 -1.1728 33 1 5.2686 -3.6960 1.4816 34 1 3.8193 -4.7294 1.4893 35 1 5.9543 -6.1832 2.2592 36 1 7.6964 -8.6158 3.7383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346131637.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:20 Heat of formation + Delta-G solvation = -89.714852 kcal Electronic energy + Delta-G solvation = -21303.146414 eV Core-core repulsion = 17787.641349 eV Total energy + Delta-G solvation = -3515.505065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.50132 -40.96565 -39.88018 -36.79281 -36.23158 -35.84016 -35.27504 -33.39592 -30.95790 -29.39201 -28.11211 -26.70329 -24.78155 -24.33871 -21.89502 -21.52053 -21.21154 -20.11572 -19.37040 -17.85086 -17.70760 -17.16220 -17.08591 -16.72224 -16.47174 -16.00406 -15.79055 -15.57960 -15.45006 -14.88309 -14.62362 -14.11393 -13.98884 -13.67330 -13.56747 -13.09272 -12.92813 -12.71627 -12.46304 -12.45388 -12.23809 -12.19391 -12.11253 -11.75346 -11.59822 -11.12969 -10.59711 -10.36937 -10.11300 -9.95293 -8.52542 -6.02763 0.00453 1.02506 1.34097 1.42084 1.50820 1.56851 1.87427 1.95188 2.16049 2.30143 3.04418 3.10631 3.14332 3.43307 3.70286 3.95628 4.07706 4.18552 4.21005 4.36910 4.38196 4.51754 4.63431 4.73833 4.87741 4.89823 5.05529 5.13694 5.18493 5.27465 5.36052 5.38146 5.89916 6.23262 6.46605 6.55671 6.95757 7.02389 7.41450 7.92811 8.64606 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036826 B = 0.003147 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.149518 B = 8895.480170 C = 9464.566409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.034 4.034 3 C -0.141 4.141 4 C 0.063 3.937 5 O -0.191 6.191 6 C 0.197 3.803 7 N -0.502 5.502 8 C -0.107 4.107 9 C 0.599 3.401 10 O -0.558 6.558 11 N -0.695 5.695 12 C 0.121 3.879 13 C 0.430 3.570 14 O -0.625 6.625 15 N -0.556 5.556 16 C -0.338 4.338 17 H 0.084 0.916 18 C -0.009 4.009 19 N -0.915 5.915 20 Si 0.997 3.003 21 H -0.271 1.271 22 H -0.270 1.270 23 H -0.270 1.270 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.114 0.886 28 H 0.089 0.911 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.306 0.694 32 H 0.415 0.585 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.400 0.600 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.625 17.685 -6.970 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.053 4.053 3 C -0.198 4.198 4 C 0.005 3.995 5 O -0.077 6.077 6 C -0.031 4.031 7 N -0.230 5.230 8 C -0.225 4.225 9 C 0.386 3.614 10 O -0.439 6.439 11 N -0.347 5.347 12 C -0.006 4.006 13 C 0.217 3.783 14 O -0.513 6.513 15 N -0.192 5.192 16 C -0.467 4.467 17 H 0.102 0.898 18 C -0.210 4.210 19 N -0.555 5.555 20 Si 0.820 3.180 21 H -0.196 1.196 22 H -0.195 1.195 23 H -0.195 1.195 24 H 0.107 0.893 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.132 0.868 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.321 0.679 32 H 0.253 0.747 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.234 0.766 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.261 17.168 -6.997 22.226 hybrid contribution 0.458 -0.642 0.026 0.789 sum -11.803 16.526 -6.971 21.471 Atomic orbital electron populations 1.21834 0.91431 1.02377 1.04131 1.20417 0.98101 0.97105 0.89663 1.21834 1.00951 0.92858 1.04127 1.24050 0.95698 0.94469 0.85276 1.84389 1.59083 1.48796 1.15464 1.29193 0.90463 0.83225 1.00265 1.70778 1.23141 1.27758 1.01351 1.21263 1.08457 1.00845 0.91979 1.16964 0.77855 0.79594 0.86993 1.90696 1.60874 1.68253 1.24027 1.45555 1.50066 1.27944 1.11158 1.20886 0.98547 0.92549 0.88649 1.20408 0.85049 0.86327 0.86498 1.90495 1.67144 1.75836 1.17833 1.41814 1.43709 1.24843 1.08839 1.19771 1.27458 1.05195 0.94317 0.89767 1.26126 0.98586 1.01415 0.94874 1.69682 1.44485 1.40056 1.01227 0.84809 0.77732 0.77073 0.78345 1.19578 1.19490 1.19502 0.89263 0.91111 0.93284 0.86843 0.89262 0.93301 0.91110 0.67891 0.74655 0.88038 0.88028 0.76557 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.18 71.98 0.66 -1.47 16 2 C -0.03 -0.69 3.24 -11.54 -0.04 -0.72 16 3 C -0.14 -2.14 9.18 71.98 0.66 -1.48 16 4 C 0.06 1.51 5.95 25.19 0.15 1.66 16 5 O -0.19 -3.64 10.73 0.39 0.00 -3.64 16 6 C 0.20 3.41 13.19 130.52 1.72 5.13 16 7 N -0.50 -13.89 11.06 -305.15 -3.37 -17.26 16 8 C -0.11 -3.25 6.99 40.40 0.28 -2.96 16 9 C 0.60 21.11 7.81 86.66 0.68 21.78 16 10 O -0.56 -20.49 14.47 -4.07 -0.06 -20.55 16 11 N -0.69 -26.21 5.52 -470.11 -2.60 -28.81 16 12 C 0.12 4.65 6.15 85.64 0.53 5.17 16 13 C 0.43 20.76 7.85 87.66 0.69 21.44 16 14 O -0.63 -34.28 15.24 -3.07 -0.05 -34.33 16 15 N -0.56 -28.56 5.29 -306.98 -1.62 -30.18 16 16 C -0.34 -19.00 9.68 84.04 0.81 -18.19 16 17 H 0.08 5.02 7.16 -2.91 -0.02 5.00 16 18 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 19 N -0.91 -48.82 13.05 21.66 0.28 -48.53 16 20 Si 1.00 42.26 29.55 68.60 2.03 44.29 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 22 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 24 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.11 2.84 5.52 -2.39 -0.01 2.83 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.31 1.37 8.06 -2.91 -0.02 1.35 16 32 H 0.42 16.66 7.17 -92.71 -0.66 15.99 16 33 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 34 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 35 H 0.40 19.51 7.90 -92.70 -0.73 18.78 16 36 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -71.26 320.19 0.97 -70.29 By element: Atomic # 1 Polarization: 38.64 SS G_CDS: -0.26 Total: 38.38 kcal Atomic # 6 Polarization: 23.73 SS G_CDS: 6.61 Total: 30.34 kcal Atomic # 7 Polarization: -117.47 SS G_CDS: -7.31 Total: -124.78 kcal Atomic # 8 Polarization: -58.42 SS G_CDS: -0.10 Total: -58.52 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -71.26 0.97 -70.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346131637.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.421 kcal (2) G-P(sol) polarization free energy of solvation -71.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds