Wall clock time and date at job start Tue Mar 31 2020 05:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32483 * 120.37309 * 2 1 4 4 C 1.32296 * 120.90012 * 179.97438 * 3 2 1 5 5 O 1.35460 * 119.16332 * 180.02562 * 4 3 2 6 6 N 1.32307 * 121.67212 * 359.71679 * 4 3 2 7 7 C 1.32757 * 120.65814 * 0.57386 * 6 4 3 8 8 O 1.35512 * 120.47582 * 179.71413 * 7 6 4 9 9 C 1.38189 * 120.37738 * 179.97438 * 2 1 3 10 10 C 1.50701 * 120.76416 * 0.03601 * 9 2 1 11 11 C 1.50704 * 109.47133 * 269.98584 * 10 9 2 12 12 O 1.21279 * 119.99737 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99848 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00473 * 359.97438 * 13 11 10 15 15 C 1.46507 * 119.99652 * 179.97438 * 13 11 10 16 16 C 1.50698 * 109.46775 * 90.00245 * 15 13 11 17 17 H 1.08008 * 120.00587 * 359.97438 * 16 15 13 18 18 C 1.37880 * 120.00213 * 180.02562 * 16 15 13 19 19 N 1.31505 * 120.00293 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99623 * 359.97438 * 18 16 15 21 21 H 1.48510 * 109.46734 * 90.00380 * 20 18 16 22 22 H 1.48500 * 109.47232 * 210.00088 * 20 18 16 23 23 H 1.48494 * 109.47318 * 330.00865 * 20 18 16 24 24 H 1.09005 * 109.46471 * 270.01793 * 1 2 3 25 25 H 1.08999 * 109.47220 * 30.01490 * 1 2 3 26 26 H 1.08995 * 109.47307 * 150.02192 * 1 2 3 27 27 H 0.96689 * 114.00048 * 89.99411 * 5 4 3 28 28 H 0.96700 * 114.00230 * 269.72399 * 8 7 6 29 29 H 1.09007 * 109.47259 * 29.97714 * 10 9 2 30 30 H 1.08994 * 109.47173 * 149.98136 * 10 9 2 31 31 H 1.09000 * 109.47349 * 90.00045 * 14 13 11 32 32 H 1.08999 * 109.47634 * 210.00084 * 14 13 11 33 33 H 1.09004 * 109.47093 * 330.00168 * 14 13 11 34 34 H 1.08998 * 109.47045 * 209.99519 * 15 13 11 35 35 H 1.08994 * 109.47033 * 330.00209 * 15 13 11 36 36 H 0.97005 * 120.00582 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1769 1.1430 0.0000 4 6 3.4998 1.1552 0.0005 5 8 4.1490 2.3441 0.0010 6 7 4.2049 0.0356 0.0066 7 6 3.5993 -1.1458 0.0010 8 8 4.3250 -2.2902 0.0015 9 6 2.2059 -1.1922 0.0005 10 6 1.4785 -2.5120 0.0003 11 6 1.2356 -2.9520 1.4211 12 8 1.6161 -2.2619 2.3430 13 7 0.5965 -4.1127 1.6671 14 6 0.1373 -4.9465 0.5536 15 6 0.3608 -4.5407 3.0483 16 6 -0.9646 -4.0021 3.5218 17 1 -1.5707 -3.4008 2.8603 18 6 -1.4032 -4.2760 4.8000 19 7 -2.5596 -3.8056 5.2133 20 14 -0.3547 -5.3154 5.9445 21 1 0.5602 -4.4344 6.7142 22 1 -1.2336 -6.0576 6.8835 23 1 0.4430 -6.2800 5.1456 24 1 -0.3632 0.0003 1.0278 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8901 -0.5135 27 1 4.3371 2.6891 0.8845 28 1 4.5361 -2.6225 -0.8818 29 1 0.5237 -2.4007 -0.5137 30 1 2.0827 -3.2597 -0.5134 31 1 0.9236 -5.6491 0.2773 32 1 -0.7530 -5.4981 0.8556 33 1 -0.1003 -4.3129 -0.3009 34 1 0.3477 -5.6296 3.0941 35 1 1.1571 -4.1596 3.6876 36 1 -2.8684 -3.9986 6.1124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442351681.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:55 Heat of formation + Delta-G solvation = -91.688247 kcal Electronic energy + Delta-G solvation = -22236.954935 eV Core-core repulsion = 18721.364298 eV Total energy + Delta-G solvation = -3515.590637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.59538 -40.59814 -39.24997 -38.13313 -36.61207 -35.30969 -34.68449 -33.77862 -31.00129 -30.01280 -28.26840 -27.19089 -24.99548 -24.08039 -23.46343 -20.44835 -20.02048 -19.71328 -19.16735 -19.05730 -17.94331 -17.25427 -16.89532 -16.53228 -16.31862 -16.01364 -15.30153 -14.98824 -14.74494 -14.56991 -14.21945 -13.93496 -13.69899 -13.62065 -13.55201 -13.44973 -13.18282 -12.91843 -12.73921 -12.56649 -12.44397 -12.02741 -11.91116 -11.72378 -11.50340 -10.85624 -10.81176 -10.42991 -10.13082 -9.35150 -8.32833 -6.36650 -0.43699 -0.19965 1.32344 1.36398 1.44074 1.76473 1.83969 2.18771 2.31166 2.46858 2.59216 3.02250 3.17309 3.49620 3.69626 3.83789 3.95660 4.19990 4.33343 4.52002 4.54203 4.68390 4.73296 4.81308 4.83674 4.88249 5.00547 5.07216 5.23070 5.48010 5.63598 5.66363 6.25617 6.41662 6.48726 6.64998 6.73612 6.81200 7.24183 7.45724 8.83657 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022505 B = 0.004656 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.888371 B = 6012.358353 C = 6208.172294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.213 3.787 3 N -0.547 5.547 4 C 0.508 3.492 5 O -0.461 6.461 6 N -0.574 5.574 7 C 0.394 3.606 8 O -0.472 6.472 9 C -0.196 4.196 10 C -0.075 4.075 11 C 0.503 3.497 12 O -0.597 6.597 13 N -0.605 5.605 14 C 0.072 3.928 15 C 0.222 3.778 16 C -0.531 4.531 17 H 0.036 0.964 18 C 0.013 3.987 19 N -0.944 5.944 20 Si 0.941 3.059 21 H -0.282 1.282 22 H -0.275 1.275 23 H -0.237 1.237 24 H 0.073 0.927 25 H 0.101 0.899 26 H 0.112 0.888 27 H 0.430 0.570 28 H 0.431 0.569 29 H 0.140 0.860 30 H 0.145 0.855 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.050 0.950 35 H 0.012 0.988 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.843 0.894 -17.107 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.069 3.931 3 N -0.275 5.275 4 C 0.203 3.797 5 O -0.268 6.268 6 N -0.312 5.312 7 C 0.207 3.793 8 O -0.283 6.283 9 C -0.202 4.202 10 C -0.115 4.115 11 C 0.292 3.708 12 O -0.478 6.478 13 N -0.336 5.336 14 C -0.070 4.070 15 C 0.100 3.900 16 C -0.569 4.569 17 H 0.054 0.946 18 C -0.185 4.185 19 N -0.585 5.585 20 Si 0.765 3.235 21 H -0.208 1.208 22 H -0.201 1.201 23 H -0.161 1.161 24 H 0.091 0.909 25 H 0.120 0.880 26 H 0.130 0.870 27 H 0.293 0.707 28 H 0.295 0.705 29 H 0.158 0.842 30 H 0.163 0.837 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.068 0.932 35 H 0.030 0.970 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.405 2.092 -16.501 19.619 hybrid contribution -0.047 -0.688 1.291 1.464 sum 10.358 1.403 -15.210 18.455 Atomic orbital electron populations 1.20989 0.85599 1.06203 1.03940 1.21719 0.98579 0.85964 0.86856 1.67890 1.09059 1.31764 1.18808 1.19985 0.83920 0.85064 0.90716 1.84635 1.75893 1.30003 1.36229 1.67398 1.44303 0.99157 1.20292 1.19030 0.86626 0.84846 0.88807 1.84768 1.73503 1.33892 1.36174 1.21182 0.93923 0.97912 1.07222 1.20563 1.03926 0.93592 0.93443 1.21058 0.77340 0.80482 0.91881 1.90667 1.53689 1.54860 1.48576 1.47917 1.55894 1.21641 1.08136 1.22074 1.00754 0.95715 0.88426 1.19315 0.94427 0.95562 0.80712 1.21569 1.03765 1.32518 0.99090 0.94565 1.25775 0.96108 0.97116 0.99541 1.70031 1.21902 1.47290 1.19230 0.85814 0.78917 0.79582 0.79228 1.20826 1.20052 1.16051 0.90856 0.87994 0.87013 0.70673 0.70538 0.84199 0.83740 0.90073 0.91600 0.88262 0.93190 0.97010 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.59 9.83 71.24 0.70 -1.89 16 2 C 0.21 6.05 6.82 42.45 0.29 6.34 16 3 N -0.55 -16.74 10.40 -301.71 -3.14 -19.88 16 4 C 0.51 15.17 8.71 180.58 1.57 16.74 16 5 O -0.46 -11.19 13.64 -87.58 -1.19 -12.39 16 6 N -0.57 -17.56 10.49 -426.36 -4.47 -22.03 16 7 C 0.39 11.00 7.81 84.84 0.66 11.66 16 8 O -0.47 -10.55 12.74 -88.14 -1.12 -11.68 16 9 C -0.20 -5.31 4.42 -19.59 -0.09 -5.39 16 10 C -0.08 -1.68 3.84 29.10 0.11 -1.57 16 11 C 0.50 18.54 7.67 87.66 0.67 19.21 16 12 O -0.60 -29.26 15.61 -3.03 -0.05 -29.30 16 13 N -0.60 -22.27 2.86 -851.14 -2.43 -24.70 16 14 C 0.07 1.67 10.24 127.77 1.31 2.98 16 15 C 0.22 10.46 4.23 85.63 0.36 10.82 16 16 C -0.53 -30.20 9.94 25.60 0.25 -29.95 16 17 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 18 C 0.01 0.74 5.47 84.66 0.46 1.20 16 19 N -0.94 -58.79 13.96 21.45 0.30 -58.49 16 20 Si 0.94 44.13 27.47 68.60 1.88 46.01 16 21 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 24 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 25 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.11 1.93 6.06 -2.39 -0.01 1.91 16 27 H 0.43 6.26 9.06 -74.06 -0.67 5.59 16 28 H 0.43 3.71 9.06 -74.06 -0.67 3.04 16 29 H 0.14 2.21 5.33 -2.38 -0.01 2.20 16 30 H 0.14 2.02 7.59 -2.39 -0.02 2.00 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.71 8.07 -2.39 -0.02 1.69 16 33 H 0.10 1.52 6.44 -2.38 -0.02 1.51 16 34 H 0.05 2.15 7.13 -2.39 -0.02 2.13 16 35 H 0.01 0.61 6.85 -2.39 -0.02 0.60 16 36 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 Total: -1.00 -88.82 313.27 -4.15 -92.97 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -0.24 Total: 9.34 kcal Atomic # 6 Polarization: 23.84 SS G_CDS: 6.31 Total: 30.15 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -9.74 Total: -125.11 kcal Atomic # 8 Polarization: -51.00 SS G_CDS: -2.36 Total: -53.37 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.01 kcal Total: -88.82 -4.15 -92.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442351681.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.283 kcal (2) G-P(sol) polarization free energy of solvation -88.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds