Wall clock time and date at job start Tue Mar 31 2020 05:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38119 * 120.03424 * 2 1 4 4 C 1.38275 * 120.07106 * 179.97438 * 3 2 1 5 5 C 1.38308 * 120.14593 * 0.04829 * 4 3 2 6 6 C 1.38081 * 120.07601 * 359.67206 * 5 4 3 7 7 C 1.38888 * 120.03488 * 179.97438 * 2 1 3 8 8 N 1.39796 * 120.07833 * 0.02687 * 7 2 1 9 9 C 1.34772 * 120.00291 * 161.93834 * 8 7 2 10 10 O 1.21625 * 119.99844 * 354.66066 * 9 8 7 11 11 C 1.47390 * 120.00304 * 174.65108 * 9 8 7 12 12 C 1.39257 * 120.28247 * 354.47270 * 11 9 8 13 13 C 1.38201 * 120.08574 * 180.23049 * 12 11 9 14 14 C 1.38835 * 120.68050 * 359.48463 * 13 12 11 15 15 C 1.37582 * 120.57996 * 0.51430 * 14 13 12 16 16 C 1.40718 * 119.87949 * 359.74800 * 15 14 13 17 17 C 1.40870 * 120.32851 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99857 * 146.28317 * 17 16 15 19 19 C 1.40283 * 120.00252 * 326.28772 * 17 16 15 20 20 N 1.30620 * 119.99709 * 350.87267 * 19 17 16 21 21 Si 1.86800 * 120.00100 * 170.87593 * 19 17 16 22 22 H 1.48505 * 109.46846 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.46960 * 119.99678 * 21 19 17 24 24 H 1.48499 * 109.47106 * 239.99845 * 21 19 17 25 25 H 1.09001 * 109.47190 * 270.02140 * 1 2 3 26 26 H 1.09001 * 109.46902 * 30.02677 * 1 2 3 27 27 H 1.09002 * 109.47010 * 150.02394 * 1 2 3 28 28 H 1.08000 * 119.96746 * 359.97438 * 3 2 1 29 29 H 1.08003 * 119.92221 * 180.02562 * 4 3 2 30 30 H 1.08005 * 119.95934 * 179.97438 * 5 4 3 31 31 H 1.08002 * 120.03600 * 180.30221 * 6 5 4 32 32 H 0.97009 * 119.99896 * 341.94502 * 8 7 2 33 33 H 1.07997 * 119.95318 * 359.95005 * 12 11 9 34 34 H 1.08003 * 119.65841 * 179.74860 * 13 12 11 35 35 H 1.08002 * 119.71076 * 180.28434 * 14 13 12 36 36 H 1.08000 * 120.06103 * 179.76707 * 15 14 13 37 37 H 0.97005 * 120.00087 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1957 0.0000 4 6 3.5811 1.1966 0.0005 5 6 4.2764 0.0011 0.0001 6 6 3.5915 -1.1979 0.0059 7 6 2.2022 -1.2024 0.0005 8 7 1.5056 -2.4144 0.0005 9 6 2.1320 -3.5517 -0.3608 10 8 3.2732 -3.5108 -0.7794 11 6 1.4342 -4.8451 -0.2486 12 6 0.1722 -4.9137 0.3361 13 6 -0.4764 -6.1293 0.4436 14 6 0.1125 -7.2913 -0.0365 15 6 1.3583 -7.2555 -0.6192 16 6 2.0426 -6.0315 -0.7362 17 6 3.3184 -5.9838 -1.3316 18 1 3.6140 -5.1186 -1.9063 19 6 4.2048 -7.0602 -1.1782 20 7 3.9233 -8.0240 -0.3426 21 14 5.7876 -7.1153 -2.1687 22 1 5.8701 -5.9135 -3.0370 23 1 6.9494 -7.1393 -1.2442 24 1 5.8011 -8.3371 -3.0126 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5143 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6584 2.1311 -0.0004 29 1 4.1192 2.1330 0.0010 30 1 5.3565 0.0053 0.0001 31 1 4.1351 -2.1311 0.0105 32 1 0.5713 -2.4369 0.2605 33 1 -0.2983 -4.0165 0.7101 34 1 -1.4532 -6.1752 0.9019 35 1 -0.4104 -8.2322 0.0515 36 1 1.8101 -8.1651 -0.9865 37 1 4.5364 -8.7682 -0.2362 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463678869.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:43 Heat of formation + Delta-G solvation = 11.367736 kcal Electronic energy + Delta-G solvation = -21083.122354 eV Core-core repulsion = 17982.849822 eV Total energy + Delta-G solvation = -3100.272531 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.12156 -38.28478 -36.79099 -34.40446 -33.67134 -32.24571 -30.49249 -29.81304 -28.72575 -26.64152 -25.51500 -23.20081 -21.95566 -21.17592 -20.62385 -19.40223 -17.86128 -16.97953 -16.29690 -15.61661 -15.23949 -14.75835 -14.37158 -14.20525 -13.90942 -13.67361 -13.42438 -13.12373 -12.84983 -12.72617 -12.34651 -12.26224 -11.94300 -11.64746 -11.25013 -11.18059 -11.12504 -10.90655 -10.76543 -10.53804 -10.06382 -10.00303 -9.77016 -9.35961 -8.54418 -8.30347 -7.75622 -7.52462 -7.39053 -6.89504 -4.49166 1.60233 1.73871 2.29002 2.72866 3.06415 3.15356 3.16677 3.74352 3.87014 3.91522 4.25776 4.59460 5.01718 5.09345 5.36207 5.40984 5.52333 5.63713 5.66106 5.78945 5.88522 5.89491 6.05085 6.17711 6.20612 6.37445 6.50907 6.68397 6.77682 6.86801 6.90977 6.97120 7.03106 7.13104 7.36082 7.51867 7.53058 7.78989 7.88005 8.07472 8.17451 8.56032 8.71724 8.78677 9.16119 10.04987 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.005875 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.386136 B = 4765.090188 C = 6314.144389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.141 4.141 3 C -0.101 4.101 4 C -0.157 4.157 5 C -0.103 4.103 6 C -0.146 4.146 7 C 0.174 3.826 8 N -0.681 5.681 9 C 0.561 3.439 10 O -0.514 6.514 11 C -0.267 4.267 12 C -0.057 4.057 13 C -0.242 4.242 14 C -0.095 4.095 15 C -0.145 4.145 16 C 0.146 3.854 17 C -0.413 4.413 18 H 0.107 0.893 19 C 0.069 3.931 20 N -0.787 5.787 21 Si 0.917 3.083 22 H -0.256 1.256 23 H -0.273 1.273 24 H -0.273 1.273 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.119 0.881 31 H 0.162 0.838 32 H 0.403 0.597 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.668 10.049 1.021 10.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.144 4.144 3 C -0.119 4.119 4 C -0.177 4.177 5 C -0.122 4.122 6 C -0.166 4.166 7 C 0.077 3.923 8 N -0.324 5.324 9 C 0.358 3.642 10 O -0.392 6.392 11 C -0.273 4.273 12 C -0.076 4.076 13 C -0.262 4.262 14 C -0.114 4.114 15 C -0.164 4.164 16 C 0.142 3.858 17 C -0.441 4.441 18 H 0.125 0.875 19 C -0.150 4.150 20 N -0.412 5.412 21 Si 0.741 3.259 22 H -0.179 1.179 23 H -0.198 1.198 24 H -0.198 1.198 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.135 0.865 29 H 0.132 0.868 30 H 0.137 0.863 31 H 0.180 0.820 32 H 0.240 0.760 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.137 0.863 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.780 9.732 0.819 10.154 hybrid contribution 0.142 -0.101 -0.038 0.178 sum -2.638 9.631 0.781 10.016 Atomic orbital electron populations 1.20672 0.91528 1.02644 1.01922 1.19532 0.95700 0.91982 1.07169 1.20675 0.94111 0.96394 1.00740 1.20963 0.94168 0.97767 1.04762 1.21065 0.99632 0.92149 0.99354 1.21978 0.92916 1.00614 1.01124 1.17808 0.91823 0.85074 0.97580 1.43843 1.14804 1.05892 1.67896 1.18605 0.86125 0.83280 0.76211 1.90564 1.18036 1.85870 1.44739 1.19313 0.98575 0.92748 1.16615 1.20639 0.93774 0.96151 0.97008 1.20287 1.00751 0.93075 1.12040 1.20824 0.95785 0.96393 0.98367 1.21387 0.93392 0.98589 1.03009 1.17466 0.92203 0.89370 0.86762 1.20271 0.97165 1.01886 1.24730 0.87485 1.26157 1.00957 0.93816 0.94057 1.69713 1.36320 1.08073 1.27119 0.86095 0.80261 0.79385 0.80170 1.17910 1.19773 1.19777 0.91538 0.91481 0.91890 0.86490 0.86799 0.86345 0.82049 0.76028 0.89326 0.88932 0.88919 0.86277 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 9.46 36.01 0.34 -0.93 16 2 C -0.14 -2.07 5.90 -104.42 -0.62 -2.69 16 3 C -0.10 -1.34 9.70 -39.61 -0.38 -1.73 16 4 C -0.16 -2.14 10.04 -39.54 -0.40 -2.53 16 5 C -0.10 -1.60 10.04 -39.61 -0.40 -2.00 16 6 C -0.15 -2.72 8.81 -39.38 -0.35 -3.07 16 7 C 0.17 3.11 6.50 -83.73 -0.54 2.56 16 8 N -0.68 -12.60 5.04 -10.85 -0.05 -12.66 16 9 C 0.56 12.76 7.57 -12.54 -0.09 12.67 16 10 O -0.51 -12.95 10.40 5.26 0.05 -12.90 16 11 C -0.27 -6.36 5.92 -104.37 -0.62 -6.98 16 12 C -0.06 -1.18 9.50 -39.22 -0.37 -1.55 16 13 C -0.24 -4.99 10.03 -39.37 -0.39 -5.38 16 14 C -0.09 -2.07 10.01 -39.60 -0.40 -2.47 16 15 C -0.14 -3.57 8.62 -38.88 -0.34 -3.90 16 16 C 0.15 3.81 5.51 -106.54 -0.59 3.22 16 17 C -0.41 -10.99 7.70 -37.82 -0.29 -11.29 16 18 H 0.11 2.95 5.88 -52.49 -0.31 2.64 16 19 C 0.07 1.73 5.26 -17.30 -0.09 1.64 16 20 N -0.79 -19.85 11.10 55.56 0.62 -19.23 16 21 Si 0.92 19.15 29.57 -169.99 -5.03 14.13 16 22 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 27 H 0.06 0.74 6.86 -51.93 -0.36 0.38 16 28 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.11 1.24 8.06 -52.48 -0.42 0.81 16 30 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 31 H 0.16 3.44 5.31 -52.50 -0.28 3.16 16 32 H 0.40 6.35 5.24 -40.82 -0.21 6.14 16 33 H 0.09 1.51 6.48 -52.49 -0.34 1.17 16 34 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 35 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 36 H 0.12 3.00 6.55 -52.49 -0.34 2.65 16 37 H 0.28 6.46 8.29 -40.82 -0.34 6.13 16 LS Contribution 309.15 15.07 4.66 4.66 Total: -1.00 -28.43 309.15 -9.21 -37.64 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -3.93 Total: 12.78 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -5.53 Total: -24.42 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: 0.56 Total: -31.89 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.05 Total: -12.90 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.43 -9.21 -37.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463678869.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.010 kcal (2) G-P(sol) polarization free energy of solvation -28.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds