Wall clock time and date at job start Tue Mar 31 2020 05:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38119 * 120.03424 * 2 1 4 4 C 1.38275 * 120.07106 * 179.97438 * 3 2 1 5 5 C 1.38308 * 120.14593 * 0.04829 * 4 3 2 6 6 C 1.38081 * 120.07601 * 359.67206 * 5 4 3 7 7 C 1.38888 * 120.03488 * 179.97438 * 2 1 3 8 8 N 1.39796 * 120.07833 * 0.02687 * 7 2 1 9 9 C 1.34772 * 120.00291 * 161.93834 * 8 7 2 10 10 O 1.21625 * 119.99844 * 354.66066 * 9 8 7 11 11 C 1.47390 * 120.00304 * 174.65108 * 9 8 7 12 12 C 1.39257 * 120.28247 * 354.47270 * 11 9 8 13 13 C 1.38201 * 120.08574 * 180.23049 * 12 11 9 14 14 C 1.38835 * 120.68050 * 359.48463 * 13 12 11 15 15 C 1.37582 * 120.57996 * 0.51430 * 14 13 12 16 16 C 1.40718 * 119.87949 * 359.74800 * 15 14 13 17 17 C 1.40870 * 120.32851 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99857 * 146.28317 * 17 16 15 19 19 C 1.40283 * 120.00252 * 326.28772 * 17 16 15 20 20 N 1.30620 * 119.99709 * 350.87267 * 19 17 16 21 21 Si 1.86800 * 120.00100 * 170.87593 * 19 17 16 22 22 H 1.48505 * 109.46846 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.46960 * 119.99678 * 21 19 17 24 24 H 1.48499 * 109.47106 * 239.99845 * 21 19 17 25 25 H 1.09001 * 109.47190 * 270.02140 * 1 2 3 26 26 H 1.09001 * 109.46902 * 30.02677 * 1 2 3 27 27 H 1.09002 * 109.47010 * 150.02394 * 1 2 3 28 28 H 1.08000 * 119.96746 * 359.97438 * 3 2 1 29 29 H 1.08003 * 119.92221 * 180.02562 * 4 3 2 30 30 H 1.08005 * 119.95934 * 179.97438 * 5 4 3 31 31 H 1.08002 * 120.03600 * 180.30221 * 6 5 4 32 32 H 0.97009 * 119.99896 * 341.94502 * 8 7 2 33 33 H 1.07997 * 119.95318 * 359.95005 * 12 11 9 34 34 H 1.08003 * 119.65841 * 179.74860 * 13 12 11 35 35 H 1.08002 * 119.71076 * 180.28434 * 14 13 12 36 36 H 1.08000 * 120.06103 * 179.76707 * 15 14 13 37 37 H 0.97005 * 120.00087 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1957 0.0000 4 6 3.5811 1.1966 0.0005 5 6 4.2764 0.0011 0.0001 6 6 3.5915 -1.1979 0.0059 7 6 2.2022 -1.2024 0.0005 8 7 1.5056 -2.4144 0.0005 9 6 2.1320 -3.5517 -0.3608 10 8 3.2732 -3.5108 -0.7794 11 6 1.4342 -4.8451 -0.2486 12 6 0.1722 -4.9137 0.3361 13 6 -0.4764 -6.1293 0.4436 14 6 0.1125 -7.2913 -0.0365 15 6 1.3583 -7.2555 -0.6192 16 6 2.0426 -6.0315 -0.7362 17 6 3.3184 -5.9838 -1.3316 18 1 3.6140 -5.1186 -1.9063 19 6 4.2048 -7.0602 -1.1782 20 7 3.9233 -8.0240 -0.3426 21 14 5.7876 -7.1153 -2.1687 22 1 5.8701 -5.9135 -3.0370 23 1 6.9494 -7.1393 -1.2442 24 1 5.8011 -8.3371 -3.0126 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5143 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6584 2.1311 -0.0004 29 1 4.1192 2.1330 0.0010 30 1 5.3565 0.0053 0.0001 31 1 4.1351 -2.1311 0.0105 32 1 0.5713 -2.4369 0.2605 33 1 -0.2983 -4.0165 0.7101 34 1 -1.4532 -6.1752 0.9019 35 1 -0.4104 -8.2322 0.0515 36 1 1.8101 -8.1651 -0.9865 37 1 4.5364 -8.7682 -0.2362 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463678869.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:43 Heat of formation + Delta-G solvation = -3.335886 kcal Electronic energy + Delta-G solvation = -21083.759951 eV Core-core repulsion = 17982.849822 eV Total energy + Delta-G solvation = -3100.910128 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60649 -39.78309 -38.46966 -36.00652 -35.38804 -33.40217 -32.14527 -31.57965 -30.13667 -27.76160 -27.28534 -24.76815 -23.44480 -22.75409 -22.00138 -21.02156 -19.55496 -18.54537 -17.84387 -17.22369 -16.69725 -16.16843 -15.99205 -15.86969 -15.36447 -15.04550 -14.73770 -14.57314 -14.52002 -14.06203 -13.93681 -13.51099 -13.23698 -13.04426 -12.89308 -12.83098 -12.60478 -12.42702 -12.19281 -12.04867 -11.78939 -11.53581 -11.43302 -11.17100 -10.15655 -9.60482 -9.50605 -9.28688 -8.81257 -8.71529 -6.41383 0.23082 0.51164 0.68339 0.97917 1.31695 1.45430 1.47184 2.18056 2.23218 2.27336 2.72536 2.97953 3.67779 3.92811 4.02390 4.17385 4.28678 4.35546 4.44451 4.55328 4.61512 4.70615 4.82441 4.83621 4.90974 5.05373 5.09684 5.21460 5.29212 5.31018 5.45840 5.57296 5.58834 5.68041 5.71366 5.79824 6.01450 6.07008 6.23066 6.29798 6.57268 6.71094 6.85332 6.93617 7.47849 8.24619 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.005875 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.386136 B = 4765.090188 C = 6314.144389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.134 4.134 3 C -0.098 4.098 4 C -0.146 4.146 5 C -0.115 4.115 6 C -0.179 4.179 7 C 0.139 3.861 8 N -0.665 5.665 9 C 0.555 3.445 10 O -0.549 6.549 11 C -0.285 4.285 12 C -0.055 4.055 13 C -0.233 4.233 14 C -0.090 4.090 15 C -0.174 4.174 16 C 0.117 3.883 17 C -0.454 4.454 18 H 0.082 0.918 19 C 0.033 3.967 20 N -0.818 5.818 21 Si 0.978 3.022 22 H -0.270 1.270 23 H -0.266 1.266 24 H -0.253 1.253 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.057 0.943 28 H 0.158 0.842 29 H 0.150 0.850 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.416 0.584 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.122 0.878 36 H 0.103 0.897 37 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.927 12.665 1.866 14.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.137 4.137 3 C -0.116 4.116 4 C -0.164 4.164 5 C -0.133 4.133 6 C -0.199 4.199 7 C 0.043 3.957 8 N -0.310 5.310 9 C 0.351 3.649 10 O -0.429 6.429 11 C -0.290 4.290 12 C -0.074 4.074 13 C -0.252 4.252 14 C -0.109 4.109 15 C -0.194 4.194 16 C 0.113 3.887 17 C -0.482 4.482 18 H 0.100 0.900 19 C -0.182 4.182 20 N -0.444 5.444 21 Si 0.799 3.201 22 H -0.195 1.195 23 H -0.191 1.191 24 H -0.177 1.177 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.076 0.924 28 H 0.176 0.824 29 H 0.168 0.832 30 H 0.148 0.852 31 H 0.139 0.861 32 H 0.255 0.745 33 H 0.148 0.852 34 H 0.153 0.847 35 H 0.140 0.860 36 H 0.121 0.879 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.076 12.371 1.682 13.477 hybrid contribution 0.676 -0.690 -0.204 0.988 sum -4.400 11.681 1.478 12.569 Atomic orbital electron populations 1.20780 0.88939 1.03675 1.03430 1.19949 0.97626 0.91003 1.05097 1.21202 0.94206 0.97381 0.98779 1.21399 0.94758 0.98084 1.02186 1.21255 1.00490 0.92010 0.99554 1.21792 0.93879 1.00365 1.03893 1.18052 0.91729 0.85732 1.00175 1.43465 1.15151 1.05227 1.67145 1.18641 0.85782 0.84302 0.76183 1.90571 1.19559 1.86618 1.46200 1.19695 0.99959 0.92741 1.16580 1.21061 0.92442 0.98223 0.95636 1.20807 1.02022 0.92139 1.10211 1.21214 0.94596 0.98476 0.96577 1.21326 0.94988 0.97674 1.05393 1.17841 0.92542 0.90955 0.87377 1.20189 0.98703 1.02218 1.27135 0.89993 1.26790 1.03421 0.93282 0.94733 1.69732 1.37671 1.08780 1.28224 0.85219 0.76814 0.79252 0.78806 1.19464 1.19103 1.17689 0.89646 0.88984 0.92378 0.82432 0.83225 0.85185 0.86066 0.74491 0.85154 0.84700 0.85987 0.87941 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 9.46 71.24 0.67 -1.45 16 2 C -0.13 -3.58 5.90 -19.74 -0.12 -3.69 16 3 C -0.10 -2.19 9.70 22.25 0.22 -1.98 16 4 C -0.15 -3.48 10.04 22.30 0.22 -3.26 16 5 C -0.11 -3.52 10.04 22.25 0.22 -3.29 16 6 C -0.18 -6.97 8.81 22.40 0.20 -6.77 16 7 C 0.14 4.95 6.50 38.19 0.25 5.19 16 8 N -0.67 -24.76 5.04 -306.48 -1.55 -26.31 16 9 C 0.56 26.48 7.57 86.65 0.66 27.14 16 10 O -0.55 -30.02 10.40 -4.11 -0.04 -30.06 16 11 C -0.28 -13.92 5.92 -19.70 -0.12 -14.03 16 12 C -0.06 -2.19 9.50 22.51 0.21 -1.97 16 13 C -0.23 -8.90 10.03 22.40 0.22 -8.67 16 14 C -0.09 -3.83 10.01 22.26 0.22 -3.61 16 15 C -0.17 -8.90 8.62 22.72 0.20 -8.71 16 16 C 0.12 6.41 5.51 -21.11 -0.12 6.29 16 17 C -0.45 -26.09 7.70 23.41 0.18 -25.91 16 18 H 0.08 4.98 5.88 -2.91 -0.02 4.96 16 19 C 0.03 1.76 5.26 85.37 0.45 2.21 16 20 N -0.82 -43.46 11.10 21.88 0.24 -43.22 16 21 Si 0.98 41.70 29.57 68.60 2.03 43.73 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 24 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 25 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.09 1.32 8.09 -2.39 -0.02 1.30 16 27 H 0.06 1.17 6.86 -2.39 -0.02 1.16 16 28 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 29 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 30 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 31 H 0.12 5.70 5.31 -3.09 -0.02 5.69 16 32 H 0.42 12.49 5.24 -92.70 -0.49 12.01 16 33 H 0.13 3.98 6.48 -2.91 -0.02 3.96 16 34 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 35 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 36 H 0.10 5.46 6.55 -2.91 -0.02 5.44 16 37 H 0.29 13.87 8.29 -92.70 -0.77 13.10 16 Total: -1.00 -68.27 309.15 4.88 -63.39 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: 0.62 Total: 34.98 kcal Atomic # 6 Polarization: -46.09 SS G_CDS: 3.58 Total: -42.51 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -1.30 Total: -69.53 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.04 Total: -30.06 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -68.27 4.88 -63.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463678869.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.049 kcal (2) G-P(sol) polarization free energy of solvation -68.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds