Wall clock time and date at job start Tue Mar 31 2020 05:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.32490 * 120.37768 * 2 1 4 4 C 1.32282 * 120.91080 * 179.97438 * 3 2 1 5 5 O 1.35451 * 119.16974 * 180.02562 * 4 3 2 6 6 N 1.32314 * 121.66734 * 359.97438 * 4 3 2 7 7 C 1.32753 * 120.66196 * 359.77660 * 6 4 3 8 8 O 1.35512 * 120.47775 * 180.26873 * 7 6 4 9 9 C 1.38183 * 120.37977 * 179.97438 * 2 1 3 10 10 C 1.50703 * 120.76417 * 359.97438 * 9 2 1 11 11 C 1.50701 * 109.47064 * 90.00031 * 10 9 2 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.47535 * 325.00618 * 14 13 11 16 16 C 1.53003 * 109.47218 * 85.00262 * 14 13 11 17 17 C 1.50702 * 109.47162 * 205.00318 * 14 13 11 18 18 H 1.08004 * 119.99698 * 0.02562 * 17 14 13 19 19 C 1.37871 * 120.00281 * 180.02562 * 17 14 13 20 20 N 1.31519 * 119.99893 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 120.00252 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.47013 * 89.99900 * 21 19 17 23 23 H 1.48493 * 109.47507 * 210.00391 * 21 19 17 24 24 H 1.48501 * 109.46943 * 330.00409 * 21 19 17 25 25 H 1.09000 * 109.47010 * 270.01690 * 1 2 3 26 26 H 1.09004 * 109.47281 * 30.02154 * 1 2 3 27 27 H 1.09005 * 109.46994 * 150.02008 * 1 2 3 28 28 H 0.96704 * 114.00293 * 89.99048 * 5 4 3 29 29 H 0.96703 * 113.99486 * 270.21485 * 8 7 6 30 30 H 1.09002 * 109.47152 * 330.00124 * 10 9 2 31 31 H 1.09001 * 109.46980 * 210.00225 * 10 9 2 32 32 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 33 33 H 1.09000 * 109.47614 * 179.97438 * 16 14 13 34 34 H 1.08998 * 109.47302 * 299.99899 * 16 14 13 35 35 H 1.09006 * 109.46570 * 59.99667 * 16 14 13 36 36 H 0.96997 * 119.99814 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1769 1.1430 0.0000 4 6 3.4997 1.1553 0.0005 5 8 4.1488 2.3441 0.0010 6 7 4.2048 0.0357 0.0015 7 6 3.5992 -1.1457 0.0065 8 8 4.3251 -2.2900 0.0131 9 6 2.2058 -1.1921 0.0005 10 6 1.4785 -2.5120 0.0017 11 6 1.2355 -2.9529 -1.4187 12 8 1.6159 -2.2635 -2.3411 13 7 0.5963 -4.1139 -1.6640 14 6 0.3607 -4.5427 -3.0448 15 1 0.1687 -3.6698 -3.6687 16 6 1.5946 -5.2814 -3.5671 17 6 -0.8317 -5.4633 -3.0883 18 1 -1.3613 -5.7044 -2.1784 19 6 -1.2466 -5.9977 -4.2897 20 7 -0.6014 -5.7045 -5.3976 21 14 -2.7242 -7.1393 -4.3435 22 1 -3.9585 -6.3416 -4.5561 23 1 -2.5619 -8.1068 -5.4583 24 1 -2.8268 -7.8771 -3.0588 25 1 -0.3633 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 4.3369 2.6893 0.8846 29 1 4.5396 -2.6247 -0.8685 30 1 0.5238 -2.4004 0.5158 31 1 2.0828 -3.2594 0.5158 32 1 0.2924 -4.6654 -0.9262 33 1 1.4191 -5.6009 -4.5943 34 1 2.4570 -4.6156 -3.5356 35 1 1.7865 -6.1544 -2.9432 36 1 -0.8931 -6.0807 -6.2427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465018770.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:58 Heat of formation + Delta-G solvation = -71.023985 kcal Electronic energy + Delta-G solvation = -21982.022965 eV Core-core repulsion = 18467.328397 eV Total energy + Delta-G solvation = -3514.694568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.52084 -39.08907 -38.15821 -37.12641 -34.97778 -34.15465 -32.75564 -32.37458 -29.71649 -28.84235 -26.95366 -25.32133 -23.51662 -22.86989 -21.11654 -19.54613 -19.38514 -18.67240 -18.08026 -17.22115 -16.07555 -15.86874 -15.43838 -15.37953 -14.67442 -14.59527 -14.09688 -13.77724 -13.56542 -13.02151 -12.75334 -12.56825 -12.52437 -12.45959 -12.03368 -11.78688 -11.63895 -11.17407 -11.02758 -10.93806 -10.79384 -10.44375 -10.37198 -10.30115 -9.48024 -9.32207 -9.13805 -8.93597 -8.61732 -8.03544 -6.18523 -4.28469 0.61958 0.84825 2.81421 3.18311 3.20074 3.21606 3.27660 3.28982 3.65174 4.01231 4.19842 4.32372 4.59156 4.69560 4.88249 5.13907 5.15391 5.39554 5.42735 5.47670 5.53981 5.75592 5.77210 6.11104 6.66021 6.73962 6.86549 7.06449 7.22570 7.29089 7.34118 7.46475 7.61763 7.82769 7.88420 8.07585 8.54274 8.69478 8.99026 9.39392 10.87365 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032013 B = 0.003874 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.444618 B = 7226.049253 C = 7538.410857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.220 3.780 3 N -0.530 5.530 4 C 0.512 3.488 5 O -0.456 6.456 6 N -0.553 5.553 7 C 0.395 3.605 8 O -0.474 6.474 9 C -0.180 4.180 10 C -0.098 4.098 11 C 0.502 3.498 12 O -0.553 6.553 13 N -0.705 5.705 14 C 0.264 3.736 15 H 0.049 0.951 16 C -0.147 4.147 17 C -0.536 4.536 18 H 0.062 0.938 19 C 0.067 3.933 20 N -0.883 5.883 21 Si 0.902 3.098 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.409 0.591 29 H 0.415 0.585 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.390 0.610 33 H 0.090 0.910 34 H 0.013 0.987 35 H 0.027 0.973 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.118 7.724 13.897 16.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.076 3.924 3 N -0.257 5.257 4 C 0.207 3.793 5 O -0.259 6.259 6 N -0.289 5.289 7 C 0.207 3.793 8 O -0.283 6.283 9 C -0.186 4.186 10 C -0.140 4.140 11 C 0.286 3.714 12 O -0.432 6.432 13 N -0.353 5.353 14 C 0.162 3.838 15 H 0.066 0.934 16 C -0.205 4.205 17 C -0.574 4.574 18 H 0.080 0.920 19 C -0.137 4.137 20 N -0.520 5.520 21 Si 0.729 3.271 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.198 1.198 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.268 0.732 29 H 0.275 0.725 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.223 0.777 33 H 0.109 0.891 34 H 0.032 0.968 35 H 0.046 0.954 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.864 9.039 12.980 16.548 hybrid contribution -0.944 -1.641 0.189 1.902 sum 3.920 7.398 13.168 15.605 Atomic orbital electron populations 1.20882 0.87030 1.05182 1.03685 1.21256 0.97470 0.85844 0.87861 1.67808 1.08873 1.31170 1.17892 1.19753 0.83708 0.84473 0.91327 1.84739 1.76211 1.30845 1.34106 1.67347 1.43917 0.98646 1.18986 1.18815 0.86360 0.84591 0.89487 1.84595 1.73801 1.34815 1.35060 1.21010 0.93898 0.97347 1.06339 1.20585 1.02039 0.93903 0.97438 1.20216 0.79245 0.82165 0.89759 1.90695 1.51937 1.54602 1.46003 1.46537 1.56269 1.20757 1.11698 1.18768 0.93419 0.95119 0.76458 0.93360 1.22077 0.96362 0.98045 1.04045 1.21202 1.12807 1.29182 0.94212 0.91998 1.24891 0.97049 0.96374 0.95365 1.69898 1.39631 1.43901 0.98588 0.86442 0.82449 0.80360 0.77814 1.20529 1.21062 1.19808 0.89217 0.89331 0.89321 0.73218 0.72454 0.87521 0.87229 0.77721 0.89125 0.96781 0.95381 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.44 36.00 0.34 -0.87 16 2 C 0.22 3.07 6.81 -82.33 -0.56 2.51 16 3 N -0.53 -7.91 10.40 -11.02 -0.11 -8.02 16 4 C 0.51 7.61 8.71 -91.29 -0.80 6.81 16 5 O -0.46 -5.53 13.64 -18.04 -0.25 -5.77 16 6 N -0.55 -8.65 10.49 -14.79 -0.16 -8.80 16 7 C 0.39 5.85 7.81 -16.71 -0.13 5.72 16 8 O -0.47 -6.12 12.74 -18.23 -0.23 -6.35 16 9 C -0.18 -2.54 4.42 -104.20 -0.46 -3.00 16 10 C -0.10 -1.23 4.99 -29.03 -0.14 -1.37 16 11 C 0.50 8.84 7.46 -10.98 -0.08 8.76 16 12 O -0.55 -12.18 15.70 5.56 0.09 -12.09 16 13 N -0.71 -13.21 5.07 -54.93 -0.28 -13.49 16 14 C 0.26 6.35 2.56 -69.08 -0.18 6.17 16 15 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 16 C -0.15 -3.48 9.26 37.16 0.34 -3.13 16 17 C -0.54 -13.54 8.73 -34.44 -0.30 -13.84 16 18 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 19 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 20 N -0.88 -24.25 11.32 55.43 0.63 -23.62 16 21 Si 0.90 19.99 29.54 -169.99 -5.02 14.96 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 25 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.09 1.02 6.52 -51.93 -0.34 0.68 16 28 H 0.41 2.49 9.06 45.56 0.41 2.90 16 29 H 0.41 4.25 9.06 45.56 0.41 4.66 16 30 H 0.11 1.03 6.81 -51.93 -0.35 0.68 16 31 H 0.11 1.17 7.62 -51.93 -0.40 0.78 16 32 H 0.39 6.15 8.54 -40.82 -0.35 5.80 16 33 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 315.58 15.07 4.76 4.76 Total: -1.00 -33.96 315.58 -5.19 -39.15 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -2.55 Total: 9.88 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -2.06 Total: 9.40 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.08 Total: -53.93 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.39 Total: -24.22 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.96 -5.19 -39.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465018770.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.877 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds