Wall clock time and date at job start Tue Mar 31 2020 05:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32489 * 120.37157 * 2 1 4 4 C 1.32293 * 120.90185 * 179.97438 * 3 2 1 5 5 O 1.35450 * 119.16225 * 179.97438 * 4 3 2 6 6 N 1.32316 * 121.66816 * 359.97438 * 4 3 2 7 7 C 1.32747 * 120.65964 * 359.77129 * 6 4 3 8 8 O 1.35515 * 120.47237 * 180.26181 * 7 6 4 9 9 C 1.38186 * 120.37764 * 179.97438 * 2 1 3 10 10 C 1.50695 * 120.76174 * 359.97438 * 9 2 1 11 11 C 1.50698 * 109.47197 * 90.00196 * 10 9 2 12 12 O 1.21281 * 119.99871 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00287 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00388 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47378 * 35.00208 * 14 13 11 16 16 C 1.53009 * 109.47194 * 275.00617 * 14 13 11 17 17 C 1.50702 * 109.47571 * 155.00548 * 14 13 11 18 18 H 1.08002 * 119.99446 * 359.97438 * 17 14 13 19 19 C 1.37871 * 120.00072 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99826 * 179.72119 * 19 17 14 21 21 Si 1.86800 * 120.00406 * 359.97438 * 19 17 14 22 22 H 1.48501 * 109.46758 * 269.72576 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72423 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72459 * 21 19 17 25 25 H 1.08998 * 109.47008 * 270.01977 * 1 2 3 26 26 H 1.08998 * 109.47549 * 30.01557 * 1 2 3 27 27 H 1.08995 * 109.47491 * 150.02260 * 1 2 3 28 28 H 0.96702 * 113.99600 * 90.00430 * 5 4 3 29 29 H 0.96699 * 114.00261 * 270.21505 * 8 7 6 30 30 H 1.09000 * 109.47590 * 329.99738 * 10 9 2 31 31 H 1.09007 * 109.46969 * 210.00111 * 10 9 2 32 32 H 0.97008 * 119.99537 * 0.02562 * 13 11 10 33 33 H 1.09001 * 109.46592 * 299.99497 * 16 14 13 34 34 H 1.08990 * 109.47127 * 59.99623 * 16 14 13 35 35 H 1.08994 * 109.46846 * 179.97438 * 16 14 13 36 36 H 0.96999 * 120.00128 * 180.27192 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1769 1.1431 0.0000 4 6 3.4997 1.1553 0.0005 5 8 4.1488 2.3442 0.0000 6 7 4.2048 0.0356 0.0015 7 6 3.5992 -1.1456 0.0067 8 8 4.3251 -2.2900 0.0130 9 6 2.2058 -1.1921 0.0005 10 6 1.4784 -2.5119 0.0017 11 6 1.2354 -2.9529 -1.4187 12 8 1.6151 -2.2630 -2.3411 13 7 0.5962 -4.1138 -1.6640 14 6 0.3605 -4.5427 -3.0448 15 1 1.2012 -4.2385 -3.6683 16 6 -0.9231 -3.8949 -3.5680 17 6 0.2199 -6.0425 -3.0879 18 1 0.2988 -6.6186 -2.1778 19 6 -0.0082 -6.6792 -4.2893 20 7 -0.1254 -7.9886 -4.3277 21 14 -0.1439 -5.6829 -5.8636 22 1 -1.5615 -5.3013 -6.0872 23 1 0.6862 -4.4571 -5.7466 24 1 0.3359 -6.4981 -7.0083 25 1 -0.3633 0.0004 1.0276 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3634 -0.8901 -0.5134 28 1 4.3370 2.6899 0.8832 29 1 4.5395 -2.6247 -0.8685 30 1 0.5238 -2.4003 0.5159 31 1 2.0827 -3.2594 0.5159 32 1 0.2922 -4.6653 -0.9261 33 1 -1.7638 -4.1992 -2.9445 34 1 -0.8215 -2.8102 -3.5368 35 1 -1.0982 -4.2137 -4.5955 36 1 -0.2820 -8.4369 -5.1735 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465018773.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:01 Heat of formation + Delta-G solvation = -62.618485 kcal Electronic energy + Delta-G solvation = -22065.087741 eV Core-core repulsion = 18550.757663 eV Total energy + Delta-G solvation = -3514.330078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.59084 -39.26717 -38.23466 -37.18703 -35.20205 -34.23868 -32.83330 -32.40700 -30.28445 -29.22415 -27.16811 -25.25458 -23.60899 -22.94819 -21.22381 -19.74481 -19.44237 -18.73491 -18.14756 -17.36530 -16.17528 -15.91166 -15.89757 -15.43849 -14.95619 -14.52094 -14.18601 -13.83623 -13.71478 -13.08372 -13.05608 -12.78827 -12.62760 -12.58430 -12.27408 -12.13507 -11.84047 -11.79325 -11.30469 -11.01024 -10.86601 -10.51010 -10.26346 -9.82033 -9.54088 -9.39055 -9.31306 -9.03949 -8.83002 -8.28840 -6.27314 -4.30589 0.55073 0.78433 2.75556 3.03429 3.12468 3.18426 3.31167 3.34426 3.57808 3.86710 4.12336 4.25606 4.50057 4.61866 4.80921 5.06726 5.08067 5.26847 5.32326 5.38702 5.44008 5.65985 5.69232 6.02531 6.22742 6.28970 6.47534 6.59703 6.76769 7.08850 7.16871 7.18843 7.23915 7.42636 7.82090 8.04144 8.41587 8.67088 8.79007 9.33099 10.84742 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028983 B = 0.004166 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.848514 B = 6719.399841 C = 6892.688439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.220 3.780 3 N -0.531 5.531 4 C 0.513 3.487 5 O -0.456 6.456 6 N -0.552 5.552 7 C 0.396 3.604 8 O -0.473 6.473 9 C -0.182 4.182 10 C -0.097 4.097 11 C 0.504 3.496 12 O -0.554 6.554 13 N -0.697 5.697 14 C 0.237 3.763 15 H 0.048 0.952 16 C -0.161 4.161 17 C -0.537 4.537 18 H 0.081 0.919 19 C 0.079 3.921 20 N -0.891 5.891 21 Si 0.885 3.115 22 H -0.276 1.276 23 H -0.263 1.263 24 H -0.294 1.294 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.410 0.590 29 H 0.416 0.584 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.397 0.603 33 H 0.054 0.946 34 H 0.035 0.965 35 H 0.047 0.953 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.176 13.946 12.107 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.075 3.925 3 N -0.258 5.258 4 C 0.209 3.791 5 O -0.259 6.259 6 N -0.288 5.288 7 C 0.209 3.791 8 O -0.282 6.282 9 C -0.188 4.188 10 C -0.138 4.138 11 C 0.289 3.711 12 O -0.434 6.434 13 N -0.345 5.345 14 C 0.133 3.867 15 H 0.066 0.934 16 C -0.219 4.219 17 C -0.575 4.575 18 H 0.099 0.901 19 C -0.125 4.125 20 N -0.528 5.528 21 Si 0.715 3.285 22 H -0.203 1.203 23 H -0.188 1.188 24 H -0.221 1.221 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.269 0.731 29 H 0.277 0.723 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.231 0.769 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.897 15.128 11.293 19.100 hybrid contribution -0.357 -0.646 -0.614 0.960 sum 2.540 14.482 10.679 18.173 Atomic orbital electron populations 1.20872 0.87096 1.05003 1.03760 1.21244 0.97433 0.85868 0.87939 1.67817 1.08893 1.31122 1.17957 1.19767 0.83695 0.84502 0.91180 1.84737 1.76203 1.30810 1.34163 1.67364 1.43895 0.98644 1.18939 1.18830 0.86365 0.84636 0.89255 1.84605 1.73763 1.34720 1.35114 1.20994 0.93939 0.97262 1.06644 1.20552 1.02242 0.94062 0.96980 1.20282 0.78773 0.82034 0.90043 1.90692 1.52232 1.54357 1.46070 1.46197 1.56687 1.20748 1.10883 1.19122 0.93836 0.95033 0.78687 0.93421 1.22449 1.00415 0.98622 1.00451 1.21024 1.51546 0.88647 0.96277 0.90110 1.24825 0.93971 0.94824 0.98837 1.69862 1.48113 1.07873 1.26909 0.86887 0.78658 0.80167 0.82831 1.20268 1.18759 1.22100 0.89142 0.89361 0.89489 0.73143 0.72339 0.87364 0.86886 0.76928 0.92721 0.94585 0.93440 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 9.44 36.01 0.34 -0.74 16 2 C 0.22 2.87 6.81 -82.33 -0.56 2.31 16 3 N -0.53 -7.51 10.40 -11.01 -0.11 -7.62 16 4 C 0.51 7.31 8.71 -91.28 -0.80 6.52 16 5 O -0.46 -5.29 13.64 -18.04 -0.25 -5.54 16 6 N -0.55 -8.34 10.49 -14.79 -0.16 -8.50 16 7 C 0.40 5.65 7.81 -16.72 -0.13 5.52 16 8 O -0.47 -5.95 12.74 -18.24 -0.23 -6.18 16 9 C -0.18 -2.42 4.42 -104.20 -0.46 -2.88 16 10 C -0.10 -1.13 4.99 -29.04 -0.14 -1.28 16 11 C 0.50 8.27 7.46 -10.99 -0.08 8.18 16 12 O -0.55 -11.34 15.70 5.56 0.09 -11.26 16 13 N -0.70 -12.30 5.07 -54.93 -0.28 -12.58 16 14 C 0.24 5.30 2.15 -69.08 -0.15 5.15 16 15 H 0.05 1.19 6.63 -51.93 -0.34 0.85 16 16 C -0.16 -3.40 8.96 37.16 0.33 -3.07 16 17 C -0.54 -13.85 9.31 -34.44 -0.32 -14.17 16 18 H 0.08 2.18 7.98 -52.49 -0.42 1.77 16 19 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 20 N -0.89 -25.70 13.96 55.43 0.77 -24.93 16 21 Si 0.88 21.21 24.37 -169.99 -4.14 17.06 16 22 H -0.28 -6.40 6.88 56.52 0.39 -6.01 16 23 H -0.26 -6.28 6.52 56.52 0.37 -5.91 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.09 0.87 6.52 -51.93 -0.34 0.53 16 28 H 0.41 2.31 9.06 45.56 0.41 2.72 16 29 H 0.42 4.10 9.06 45.56 0.41 4.52 16 30 H 0.11 0.93 6.81 -51.93 -0.35 0.58 16 31 H 0.11 1.15 7.62 -51.93 -0.40 0.76 16 32 H 0.40 5.99 8.54 -40.82 -0.35 5.64 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 1.05 3.28 -51.93 -0.17 0.88 16 36 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 308.76 15.07 4.65 4.65 Total: -1.00 -34.95 308.76 -4.14 -39.09 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -2.42 Total: 8.20 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -2.07 Total: 7.59 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: 0.23 Total: -53.62 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.39 Total: -22.97 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.14 Total: 17.06 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.95 -4.14 -39.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465018773.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.525 kcal (2) G-P(sol) polarization free energy of solvation -34.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds