Wall clock time and date at job start Tue Mar 31 2020 05:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35240 * 128.01786 * 2 1 4 4 O 1.34089 * 106.60903 * 179.97438 * 3 2 1 5 5 N 1.20915 * 111.74570 * 359.97438 * 4 3 2 6 6 C 1.30719 * 111.47352 * 359.71151 * 5 4 3 7 7 N 1.39493 * 126.89512 * 180.30980 * 6 5 4 8 8 C 1.34771 * 120.00086 * 0.15977 * 7 6 5 9 9 O 1.21583 * 120.00173 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99990 * 179.97438 * 8 7 6 11 11 C 1.47425 * 125.64968 * 0.03116 * 10 8 7 12 12 C 1.54910 * 104.83153 * 204.08555 * 11 10 8 13 13 C 1.55154 * 101.58323 * 322.99269 * 12 11 10 14 14 O 1.42902 * 110.71876 * 277.13528 * 13 12 11 15 15 C 1.50703 * 110.71811 * 154.04359 * 13 12 11 16 16 H 1.07995 * 120.00104 * 359.97438 * 15 13 12 17 17 C 1.37881 * 119.99700 * 179.97438 * 15 13 12 18 18 N 1.31513 * 119.99809 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 119.99658 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.46992 * 90.00283 * 19 17 15 21 21 H 1.48504 * 109.46709 * 210.00056 * 19 17 15 22 22 H 1.48498 * 109.47200 * 329.99926 * 19 17 15 23 23 C 1.47026 * 125.64549 * 179.71953 * 10 8 7 24 24 H 1.09001 * 109.46953 * 90.02510 * 1 2 3 25 25 H 1.09000 * 109.47318 * 210.02108 * 1 2 3 26 26 H 1.09000 * 109.47161 * 330.02739 * 1 2 3 27 27 H 1.07998 * 126.70067 * 359.97438 * 3 2 1 28 28 H 0.97004 * 119.99374 * 180.16683 * 7 6 5 29 29 H 1.08993 * 110.36701 * 322.92983 * 11 10 8 30 30 H 1.09004 * 110.36387 * 85.24905 * 11 10 8 31 31 H 1.08999 * 111.00302 * 81.06815 * 12 11 10 32 32 H 1.09004 * 111.00253 * 204.87519 * 12 11 10 33 33 H 0.96697 * 114.00179 * 180.02562 * 14 13 12 34 34 H 0.97007 * 119.99533 * 179.97438 * 18 17 15 35 35 H 1.09001 * 109.88177 * 298.39679 * 23 10 8 36 36 H 1.08993 * 109.88525 * 59.56518 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3400 1.0654 0.0000 4 8 3.5884 0.5760 0.0006 5 7 3.5955 -0.6331 0.0014 6 6 2.3819 -1.1188 0.0076 7 7 2.0189 -2.4656 0.0164 8 6 2.9705 -3.4200 0.0224 9 8 4.1453 -3.1071 0.0207 10 7 2.6197 -4.7213 0.0314 11 6 1.2394 -5.2391 0.0349 12 6 1.3483 -6.6541 0.6559 13 6 2.6996 -7.1466 0.0738 14 8 2.5215 -7.6714 -1.2434 15 6 3.3246 -8.1786 0.9768 16 1 2.8246 -8.4730 1.8877 17 6 4.5349 -8.7470 0.6400 18 7 5.1439 -8.3881 -0.4689 19 14 5.3099 -10.0257 1.7597 20 1 4.8456 -11.3788 1.3615 21 1 6.7886 -9.9553 1.6422 22 1 4.9117 -9.7594 3.1653 23 6 3.5503 -5.8595 0.0329 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5134 27 1 2.0554 2.1072 -0.0004 28 1 1.0815 -2.7152 0.0181 29 1 0.5978 -4.6048 0.6464 30 1 0.8546 -5.3002 -0.9831 31 1 1.3876 -6.6014 1.7439 32 1 0.5258 -7.2894 0.3271 33 1 3.3366 -7.9932 -1.6521 34 1 5.9956 -8.7877 -0.7056 35 1 4.1577 -5.8429 -0.8721 36 1 4.1915 -5.8130 0.9130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465967367.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:11 Heat of formation + Delta-G solvation = -2.766219 kcal Electronic energy + Delta-G solvation = -22256.015066 eV Core-core repulsion = 18744.280378 eV Total energy + Delta-G solvation = -3511.734689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.79936 -39.94008 -37.66506 -35.62981 -34.39186 -33.39124 -32.19413 -31.38090 -29.90205 -28.23021 -27.87480 -25.34766 -23.39774 -22.02551 -21.91944 -19.72046 -19.31586 -18.46393 -17.52739 -17.41382 -17.12768 -15.97382 -15.45959 -15.05754 -14.58300 -14.42632 -14.10619 -13.62737 -13.45185 -13.32260 -12.98736 -12.92723 -12.42651 -12.38019 -11.79841 -11.62214 -11.25841 -11.08705 -11.03047 -10.87345 -10.72744 -10.51022 -10.20773 -9.74919 -9.44898 -9.39775 -8.69782 -8.65258 -8.37401 -7.90126 -6.32149 -4.41108 1.53042 2.25563 2.58146 3.20239 3.28017 3.30483 3.35651 3.66342 4.01312 4.24539 4.29756 4.72572 4.88681 4.94919 5.16379 5.26607 5.30277 5.45149 5.55277 5.58193 5.72370 5.86308 5.92238 6.00712 6.42576 6.54148 6.63982 6.79522 6.85599 7.07988 7.24526 7.40306 7.70722 7.96142 8.20871 8.53701 8.62374 8.90477 9.27817 9.39739 10.75791 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031826 B = 0.004099 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.562151 B = 6828.666360 C = 7314.111648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.225 4.225 3 C -0.055 4.055 4 O 0.097 5.903 5 N -0.346 5.346 6 C 0.266 3.734 7 N -0.648 5.648 8 C 0.707 3.293 9 O -0.551 6.551 10 N -0.623 5.623 11 C 0.099 3.901 12 C -0.115 4.115 13 C 0.250 3.750 14 O -0.586 6.586 15 C -0.539 4.539 16 H 0.068 0.932 17 C 0.071 3.929 18 N -0.895 5.895 19 Si 0.906 3.094 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.119 3.881 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.215 0.785 28 H 0.414 0.586 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.387 0.613 34 H 0.272 0.728 35 H 0.064 0.936 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.520 14.657 0.653 18.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.231 4.231 3 C -0.137 4.137 4 O 0.036 5.964 5 N -0.059 5.059 6 C 0.014 3.986 7 N -0.304 5.304 8 C 0.408 3.592 9 O -0.425 6.425 10 N -0.360 5.360 11 C -0.025 4.025 12 C -0.153 4.153 13 C 0.209 3.791 14 O -0.397 6.397 15 C -0.577 4.577 16 H 0.086 0.914 17 C -0.133 4.133 18 N -0.534 5.534 19 Si 0.733 3.267 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.197 1.197 23 C -0.002 4.002 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.231 0.769 28 H 0.251 0.749 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.239 0.761 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.799 14.466 0.653 17.485 hybrid contribution -0.280 -0.764 0.418 0.915 sum -10.080 13.702 1.070 17.044 Atomic orbital electron populations 1.20050 0.87276 1.03134 1.02620 1.20968 0.98292 0.90602 1.13278 1.25562 0.83834 1.00677 1.03588 1.84962 1.28115 1.15452 1.67908 1.74557 1.18671 0.89972 1.22718 1.20197 0.89597 0.86028 1.02793 1.41878 1.10185 1.00763 1.77623 1.15527 0.84520 0.79992 0.79165 1.91018 1.15586 1.80126 1.55734 1.47965 1.09353 1.03286 1.75396 1.22341 0.83241 0.96503 1.00372 1.22735 0.99672 0.93095 0.99838 1.19481 0.88901 0.88548 0.82167 1.86065 1.39435 1.82823 1.31335 1.21506 1.05422 1.22892 1.07892 0.91396 1.25086 0.96382 0.96421 0.95363 1.69572 1.17395 1.42922 1.23518 0.86368 0.78340 0.81217 0.80803 1.20333 1.20934 1.19675 1.23027 0.92047 0.83207 1.01945 0.90888 0.91405 0.90741 0.76850 0.74902 0.92548 0.91581 0.90427 0.90310 0.76086 0.91799 0.91737 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.47 36.01 0.38 -0.13 16 2 C -0.23 -2.47 6.34 -104.24 -0.66 -3.13 16 3 C -0.05 -0.52 12.25 29.66 0.36 -0.16 16 4 O 0.10 1.38 11.19 17.05 0.19 1.58 16 5 N -0.35 -6.40 10.38 31.19 0.32 -6.08 16 6 C 0.27 4.26 7.90 -154.83 -1.22 3.04 16 7 N -0.65 -10.58 5.38 -15.82 -0.09 -10.66 16 8 C 0.71 15.02 8.45 -86.93 -0.73 14.29 16 9 O -0.55 -14.19 15.44 5.29 0.08 -14.11 16 10 N -0.62 -12.95 3.33 -176.23 -0.59 -13.53 16 11 C 0.10 1.65 6.56 -2.53 -0.02 1.64 16 12 C -0.12 -2.21 6.23 -24.58 -0.15 -2.37 16 13 C 0.25 5.97 0.86 -89.93 -0.08 5.89 16 14 O -0.59 -14.64 13.07 -35.23 -0.46 -15.10 16 15 C -0.54 -13.96 8.12 -34.44 -0.28 -14.24 16 16 H 0.07 1.72 7.76 -52.49 -0.41 1.31 16 17 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 18 N -0.89 -23.87 10.97 55.43 0.61 -23.26 16 19 Si 0.91 20.42 29.54 -169.99 -5.02 15.40 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 C 0.12 2.92 5.54 -3.06 -0.02 2.90 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.21 0.90 8.06 -52.49 -0.42 0.48 16 28 H 0.41 5.13 7.23 -40.82 -0.30 4.84 16 29 H 0.06 0.73 7.30 -51.93 -0.38 0.35 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.08 1.43 8.03 -51.93 -0.42 1.02 16 32 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.39 10.04 6.98 45.56 0.32 10.36 16 34 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.06 1.73 8.07 -51.93 -0.42 1.31 16 36 H 0.07 1.77 7.82 -51.93 -0.41 1.36 16 LS Contribution 308.81 15.07 4.65 4.65 Total: -1.00 -33.40 308.81 -6.48 -39.88 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -3.67 Total: 11.75 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -2.52 Total: 9.49 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.26 Total: -53.53 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.19 Total: -27.64 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.40 -6.48 -39.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465967367.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.116 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds