Wall clock time and date at job start Tue Mar 31 2020 05:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35245 * 128.02121 * 2 1 4 4 O 1.34088 * 106.61013 * 180.02562 * 3 2 1 5 5 N 1.20918 * 111.74959 * 359.97438 * 4 3 2 6 6 C 1.30724 * 111.46945 * 0.02562 * 5 4 3 7 7 N 1.39485 * 126.89192 * 179.97438 * 6 5 4 8 8 C 1.34782 * 119.99878 * 0.02703 * 7 6 5 9 9 O 1.21581 * 120.00064 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99866 * 179.97438 * 8 7 6 11 11 C 1.47428 * 125.65215 * 359.69695 * 10 8 7 12 12 C 1.55120 * 104.72688 * 155.81370 * 11 10 8 13 13 C 1.55163 * 101.48374 * 37.29253 * 12 11 10 14 14 O 1.42896 * 110.71896 * 82.70092 * 13 12 11 15 15 C 1.50711 * 110.87096 * 205.89889 * 13 12 11 16 16 H 1.07995 * 119.99825 * 355.06516 * 15 13 12 17 17 C 1.37879 * 119.99781 * 175.06863 * 15 13 12 18 18 N 1.31518 * 119.99728 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99739 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47355 * 59.99858 * 19 17 15 21 21 H 1.48495 * 109.46833 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46922 * 299.99595 * 19 17 15 23 23 C 1.47022 * 125.64829 * 179.97438 * 10 8 7 24 24 H 1.08998 * 109.47425 * 269.99604 * 1 2 3 25 25 H 1.08999 * 109.47447 * 30.00329 * 1 2 3 26 26 H 1.09007 * 109.46846 * 150.00069 * 1 2 3 27 27 H 1.08000 * 126.69159 * 359.97438 * 3 2 1 28 28 H 0.96999 * 120.00565 * 180.02562 * 7 6 5 29 29 H 1.09000 * 110.36168 * 274.74357 * 11 10 8 30 30 H 1.09004 * 110.36106 * 37.06040 * 11 10 8 31 31 H 1.09000 * 111.19257 * 279.19526 * 12 11 10 32 32 H 1.08994 * 110.90949 * 155.27206 * 12 11 10 33 33 H 0.96696 * 114.00417 * 185.02399 * 14 13 12 34 34 H 0.97002 * 119.99114 * 180.02562 * 18 17 15 35 35 H 1.08999 * 109.88480 * 300.44627 * 23 10 8 36 36 H 1.09004 * 109.88013 * 61.45610 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3400 1.0654 0.0000 4 8 3.5883 0.5759 -0.0006 5 7 3.5955 -0.6332 -0.0004 6 6 2.3818 -1.1189 -0.0003 7 7 2.0188 -2.4657 -0.0005 8 6 2.9705 -3.4201 -0.0005 9 8 4.1453 -3.1071 -0.0006 10 7 2.6198 -4.7214 -0.0002 11 6 1.2395 -5.2393 0.0063 12 6 1.3479 -6.6584 -0.6106 13 6 2.6997 -7.1469 -0.0262 14 8 2.5226 -7.6628 1.2945 15 6 3.3284 -8.1835 -0.9215 16 1 2.7947 -8.5434 -1.7886 17 6 4.5850 -8.6723 -0.6334 18 7 5.2351 -8.2337 0.4224 19 14 5.3647 -9.9566 -1.7435 20 1 5.4993 -9.4079 -3.1168 21 1 6.7075 -10.3139 -1.2199 22 1 4.5071 -11.1685 -1.7765 23 6 3.5503 -5.8596 -0.0007 24 1 -0.3634 -0.0001 1.0276 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3633 -0.8901 -0.5139 27 1 2.0552 2.1072 -0.0004 28 1 1.0815 -2.7154 -0.0008 29 1 0.8600 -5.2947 1.0266 30 1 0.5947 -4.6083 -0.6054 31 1 1.3864 -6.6130 -1.6990 32 1 0.5261 -7.2917 -0.2764 33 1 3.3475 -7.9103 1.7341 34 1 6.1193 -8.5774 0.6247 35 1 4.1866 -5.8179 -0.8847 36 1 4.1646 -5.8365 0.8995 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465967368.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:13 Heat of formation + Delta-G solvation = -28.257819 kcal Electronic energy + Delta-G solvation = -22273.113359 eV Core-core repulsion = 18760.273271 eV Total energy + Delta-G solvation = -3512.840088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.88624 -41.54981 -39.37103 -36.93787 -36.18552 -34.42674 -34.25650 -32.65317 -31.48597 -29.63565 -28.89448 -27.20951 -24.94584 -23.34185 -22.96961 -21.51010 -20.70166 -19.75133 -19.09319 -18.72252 -18.64293 -17.40948 -17.02274 -16.84750 -16.27802 -16.06652 -15.15391 -15.04067 -14.82195 -14.70579 -14.12593 -14.04216 -13.97600 -13.54729 -13.41591 -13.06365 -12.84458 -12.73701 -12.58637 -12.36958 -12.34139 -12.14053 -12.06854 -11.43455 -11.20681 -10.67899 -10.34580 -10.29856 -10.02914 -9.48458 -8.28849 -6.45102 0.67459 1.11686 1.17162 1.41845 1.42357 1.50327 2.10749 2.35710 2.56142 2.70990 2.98187 3.32921 3.73424 3.78851 4.01060 4.10384 4.13666 4.30633 4.39378 4.52639 4.64692 4.87540 4.89801 4.98834 5.00594 5.07524 5.13561 5.23161 5.30356 5.41959 5.45324 5.71225 5.79476 6.03881 6.60687 6.72642 7.23543 7.24139 7.32073 7.59995 8.77112 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031227 B = 0.004144 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.435511 B = 6755.678469 C = 7261.320051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.219 4.219 3 C -0.036 4.036 4 O 0.088 5.912 5 N -0.409 5.409 6 C 0.231 3.769 7 N -0.628 5.628 8 C 0.703 3.297 9 O -0.607 6.607 10 N -0.627 5.627 11 C 0.101 3.899 12 C -0.108 4.108 13 C 0.235 3.765 14 O -0.585 6.585 15 C -0.559 4.559 16 H 0.070 0.930 17 C 0.025 3.975 18 N -0.917 5.917 19 Si 0.964 3.036 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.265 1.265 23 C 0.141 3.859 24 H 0.085 0.915 25 H 0.102 0.898 26 H 0.072 0.928 27 H 0.272 0.728 28 H 0.433 0.567 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.375 0.625 34 H 0.270 0.730 35 H 0.029 0.971 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.804 16.157 -1.233 21.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.225 4.225 3 C -0.117 4.117 4 O 0.027 5.973 5 N -0.123 5.123 6 C -0.020 4.020 7 N -0.286 5.286 8 C 0.404 3.596 9 O -0.485 6.485 10 N -0.363 5.363 11 C -0.020 4.020 12 C -0.146 4.146 13 C 0.194 3.806 14 O -0.393 6.393 15 C -0.597 4.597 16 H 0.088 0.912 17 C -0.176 4.176 18 N -0.556 5.556 19 Si 0.789 3.211 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.190 1.190 23 C 0.018 3.982 24 H 0.103 0.897 25 H 0.121 0.879 26 H 0.091 0.909 27 H 0.288 0.712 28 H 0.274 0.726 29 H 0.097 0.903 30 H 0.125 0.875 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.224 0.776 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -13.181 15.948 -1.270 20.729 hybrid contribution 0.686 -1.072 -0.178 1.285 sum -12.495 14.876 -1.448 19.481 Atomic orbital electron populations 1.20232 0.84000 1.04821 1.03902 1.21472 1.00162 0.88500 1.12358 1.26673 0.81578 1.02812 1.00589 1.84877 1.30516 1.14080 1.67867 1.74561 1.21065 0.91911 1.24734 1.20797 0.90604 0.86482 1.04079 1.41439 1.10056 1.00364 1.76749 1.15730 0.84564 0.80571 0.78691 1.90973 1.18328 1.81141 1.58016 1.47906 1.10451 1.02646 1.75346 1.22621 0.81551 0.95819 1.02036 1.22761 0.97137 0.94474 1.00249 1.19710 0.91712 0.87724 0.81448 1.86089 1.36891 1.85412 1.30866 1.21825 1.02165 1.23928 1.11804 0.91157 1.25840 0.97255 0.98055 0.96433 1.69809 1.14284 1.43881 1.27604 0.85518 0.77408 0.79365 0.78841 1.19865 1.21127 1.18955 1.22468 0.92034 0.85253 0.98473 0.89676 0.87909 0.90937 0.71233 0.72580 0.90294 0.87482 0.89601 0.88528 0.77586 0.92113 0.95199 0.95373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.47 71.23 0.75 0.08 16 2 C -0.22 -4.13 6.34 -19.62 -0.12 -4.26 16 3 C -0.04 -0.57 12.25 67.13 0.82 0.25 16 4 O 0.09 2.46 11.19 71.18 0.80 3.26 16 5 N -0.41 -15.44 10.38 -56.32 -0.58 -16.02 16 6 C 0.23 7.23 7.90 134.11 1.06 8.29 16 7 N -0.63 -19.96 5.38 -323.27 -1.74 -21.70 16 8 C 0.70 30.55 8.45 179.05 1.51 32.07 16 9 O -0.61 -33.07 15.44 -3.97 -0.06 -33.13 16 10 N -0.63 -26.26 3.32 -829.33 -2.76 -29.02 16 11 C 0.10 3.13 6.58 86.93 0.57 3.70 16 12 C -0.11 -3.95 6.24 32.06 0.20 -3.75 16 13 C 0.23 11.30 0.85 -10.35 -0.01 11.29 16 14 O -0.58 -29.28 13.07 -148.98 -1.95 -31.23 16 15 C -0.56 -29.35 8.13 25.60 0.21 -29.15 16 16 H 0.07 3.55 7.78 -2.91 -0.02 3.53 16 17 C 0.03 1.34 5.28 84.65 0.45 1.79 16 18 N -0.92 -50.97 10.96 21.45 0.24 -50.74 16 19 Si 0.96 42.55 29.54 68.60 2.03 44.57 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 21 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 23 C 0.14 7.22 5.23 86.73 0.45 7.68 16 24 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.07 0.63 8.08 -2.38 -0.02 0.61 16 27 H 0.27 0.76 8.06 -2.91 -0.02 0.73 16 28 H 0.43 9.61 7.23 -92.71 -0.67 8.94 16 29 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.11 2.27 7.29 -2.39 -0.02 2.26 16 31 H 0.09 2.99 8.04 -2.39 -0.02 2.97 16 32 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 33 H 0.38 19.83 7.45 -74.06 -0.55 19.28 16 34 H 0.27 14.47 8.31 -92.71 -0.77 13.69 16 35 H 0.03 1.70 7.81 -2.39 -0.02 1.69 16 36 H 0.03 1.61 7.92 -2.38 -0.02 1.59 16 Total: -1.00 -79.61 308.88 1.77 -77.85 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: -0.09 Total: 28.15 kcal Atomic # 6 Polarization: 22.11 SS G_CDS: 5.89 Total: 28.00 kcal Atomic # 7 Polarization: -112.63 SS G_CDS: -4.85 Total: -117.47 kcal Atomic # 8 Polarization: -59.88 SS G_CDS: -1.21 Total: -61.10 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -79.61 1.77 -77.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465967368.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.588 kcal (2) G-P(sol) polarization free energy of solvation -79.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds