Wall clock time and date at job start Tue Mar 31 2020 06:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46978 * 2 1 4 4 C 1.50706 * 109.47237 * 240.00580 * 2 1 3 5 5 H 1.07999 * 119.99813 * 240.00434 * 4 2 1 6 6 C 1.37871 * 119.99990 * 59.99523 * 4 2 1 7 7 N 1.31514 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99943 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47086 * 59.99963 * 8 6 4 10 10 H 1.48503 * 109.47155 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47243 * 299.99900 * 8 6 4 12 12 C 1.53002 * 109.47415 * 120.00098 * 2 1 3 13 13 N 1.46496 * 109.47037 * 300.00318 * 12 2 1 14 14 C 1.34777 * 119.99875 * 180.02562 * 13 12 2 15 15 O 1.21619 * 120.00045 * 0.26812 * 14 13 12 16 16 C 1.47216 * 119.99864 * 179.97438 * 14 13 12 17 17 C 1.37006 * 126.63827 * 179.97438 * 16 14 13 18 18 C 1.40954 * 105.46490 * 180.02562 * 17 16 14 19 19 C 1.47639 * 126.27795 * 179.97438 * 18 17 16 20 20 O 1.21484 * 119.99826 * 359.97438 * 19 18 17 21 21 O 1.34719 * 120.00007 * 179.97438 * 19 18 17 22 22 N 1.31994 * 107.44430 * 359.97438 * 18 17 16 23 23 N 1.28453 * 110.48929 * 359.71845 * 22 18 17 24 24 H 0.96998 * 125.06028 * 180.27761 * 23 22 18 25 25 H 1.09002 * 109.47045 * 299.99833 * 1 2 3 26 26 H 1.09001 * 109.46922 * 59.99626 * 1 2 3 27 27 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47006 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47600 * 299.99959 * 3 2 1 30 30 H 1.09002 * 109.46838 * 60.00684 * 3 2 1 31 31 H 0.97005 * 120.00032 * 179.97438 * 7 6 4 32 32 H 1.08992 * 109.46974 * 179.97438 * 12 2 1 33 33 H 1.08999 * 109.46297 * 60.00166 * 12 2 1 34 34 H 0.96999 * 120.00082 * 359.97438 * 13 12 2 35 35 H 1.08009 * 127.26962 * 0.02562 * 17 16 14 36 36 H 0.96693 * 117.00008 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3213 -1.1201 -4.0080 9 1 1.8259 -2.5200 -4.0079 10 1 1.8258 -0.4203 -5.2205 11 1 3.8064 -1.1205 -4.0083 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8778 -0.4909 3.6695 15 8 2.5815 -1.4766 3.7810 16 6 1.3875 0.2033 4.8715 17 6 1.6333 -0.1441 6.1738 18 6 0.9551 0.8148 6.9530 19 6 0.9144 0.8716 8.4278 20 8 1.5038 0.0366 9.0843 21 8 0.2235 1.8495 9.0454 22 7 0.3632 1.6527 6.1225 23 7 0.6036 1.3235 4.9044 24 1 0.2754 1.7970 4.1241 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8901 31 1 0.7094 1.1620 -3.4844 32 1 3.1300 -0.7216 1.2489 33 1 1.6767 -1.7489 1.2491 34 1 0.9943 0.7581 2.3564 35 1 2.2224 -0.9771 6.5284 36 1 0.2257 1.8452 10.0123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573467471.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:53 Heat of formation + Delta-G solvation = -58.766244 kcal Electronic energy + Delta-G solvation = -21451.801360 eV Core-core repulsion = 17937.638327 eV Total energy + Delta-G solvation = -3514.163032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.01198 -40.12724 -39.29261 -36.57281 -36.34914 -33.69356 -32.34021 -31.54159 -30.71934 -26.10913 -25.88769 -25.39981 -25.22362 -23.09759 -21.10945 -20.68405 -19.32391 -18.74560 -18.26456 -17.02161 -16.47432 -16.09376 -15.52177 -15.48598 -15.39433 -14.65912 -14.63344 -13.94889 -13.74123 -13.46133 -13.04820 -12.96804 -12.36506 -11.86268 -11.55796 -11.53608 -11.31800 -11.15502 -10.95830 -10.82307 -10.54029 -10.33375 -10.06839 -9.94034 -9.79945 -9.57014 -9.48192 -8.94569 -8.72279 -8.47048 -6.12816 -4.23428 0.89455 1.19289 2.19186 2.73094 2.79812 3.22336 3.24054 3.28036 3.28861 3.35276 4.08070 4.31446 4.57366 4.98949 5.11782 5.14507 5.37789 5.92058 6.00090 6.11545 6.14056 6.29639 6.40898 6.51787 6.62693 6.72424 6.75389 6.85530 7.18773 7.25822 7.40243 7.56579 7.63814 7.68918 7.86689 7.99040 8.19821 8.29522 8.76795 9.43291 10.88733 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.047783 B = 0.003177 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.841359 B = 8811.198078 C = 9205.980041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.132 4.132 4 C -0.509 4.509 5 H 0.059 0.941 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.130 3.870 13 N -0.709 5.709 14 C 0.579 3.421 15 O -0.522 6.522 16 C -0.024 4.024 17 C -0.096 4.096 18 C -0.017 4.017 19 C 0.578 3.422 20 O -0.503 6.503 21 O -0.501 6.501 22 N -0.202 5.202 23 N -0.356 5.356 24 H 0.453 0.547 25 H 0.003 0.997 26 H 0.088 0.912 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.088 0.912 30 H 0.003 0.997 31 H 0.262 0.738 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.393 0.607 35 H 0.179 0.821 36 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.900 4.114 15.298 16.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 C -0.190 4.190 4 C -0.548 4.548 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.009 3.991 13 N -0.359 5.359 14 C 0.361 3.639 15 O -0.397 6.397 16 C -0.150 4.150 17 C -0.125 4.125 18 C -0.173 4.173 19 C 0.420 3.580 20 O -0.389 6.389 21 O -0.312 6.312 22 N -0.044 5.044 23 N -0.078 5.078 24 H 0.300 0.700 25 H 0.022 0.978 26 H 0.106 0.894 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.106 0.894 30 H 0.022 0.978 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.228 0.772 35 H 0.197 0.803 36 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -2.922 4.150 14.961 15.798 hybrid contribution 0.287 -0.412 -0.702 0.863 sum -2.635 3.738 14.259 14.974 Atomic orbital electron populations 1.21858 0.97697 0.99391 1.00033 1.18376 0.92821 0.92780 0.90479 1.21860 0.98828 0.98260 1.00030 1.20916 1.31828 1.12286 0.89748 0.92312 1.24871 0.94729 0.94880 0.98923 1.69775 1.36476 1.22658 1.23530 0.86605 0.79281 0.79804 0.82027 1.20212 1.21287 1.20207 1.21888 0.98638 0.96022 0.82599 1.46258 1.52183 1.31483 1.05977 1.16927 0.81187 0.84087 0.81672 1.90851 1.37471 1.25490 1.85912 1.21796 1.02923 0.93171 0.97102 1.21828 1.00988 1.00503 0.89139 1.20535 1.06639 0.98831 0.91280 1.19114 0.74952 0.77976 0.86000 1.90946 1.42831 1.39384 1.65712 1.84632 1.67994 1.50480 1.28061 1.73671 1.18436 1.22476 0.89773 1.43922 1.36253 1.20800 1.06864 0.69973 0.97817 0.89384 0.95188 0.95189 0.89379 0.97823 0.92823 0.91962 0.91974 0.77192 0.80335 0.72538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 8.08 37.16 0.30 -2.43 16 2 C 0.06 1.20 0.50 -155.66 -0.08 1.12 16 3 C -0.13 -2.73 8.08 37.16 0.30 -2.43 16 4 C -0.51 -12.61 8.01 -34.44 -0.28 -12.89 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.89 -22.54 9.35 55.43 0.52 -22.02 16 8 Si 0.89 19.97 29.54 -169.99 -5.02 14.95 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 C 0.13 2.50 4.50 -4.04 -0.02 2.48 16 13 N -0.71 -10.98 4.95 -61.46 -0.30 -11.28 16 14 C 0.58 9.09 7.81 -12.61 -0.10 8.99 16 15 O -0.52 -10.03 16.90 5.26 0.09 -9.94 16 16 C -0.02 -0.31 7.10 -82.47 -0.59 -0.89 16 17 C -0.10 -1.24 10.55 -39.00 -0.41 -1.66 16 18 C -0.02 -0.21 7.13 -82.93 -0.59 -0.80 16 19 C 0.58 6.58 8.34 34.57 0.29 6.87 16 20 O -0.50 -6.76 17.70 -19.25 -0.34 -7.11 16 21 O -0.50 -4.19 13.44 -40.54 -0.54 -4.74 16 22 N -0.20 -2.38 12.22 33.32 0.41 -1.97 16 23 N -0.36 -3.76 6.84 33.26 0.23 -3.53 16 24 H 0.45 3.43 8.19 -190.45 -1.56 1.87 16 25 H 0.00 0.05 6.86 -51.93 -0.36 -0.31 16 26 H 0.09 2.05 6.07 -51.93 -0.32 1.73 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 2.05 6.07 -51.93 -0.32 1.74 16 30 H 0.00 0.05 6.86 -51.93 -0.36 -0.31 16 31 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.39 5.17 5.32 -40.82 -0.22 4.95 16 35 H 0.18 2.21 8.06 -52.48 -0.42 1.79 16 36 H 0.42 1.29 9.11 45.56 0.42 1.71 16 LS Contribution 312.67 15.07 4.71 4.71 Total: -1.00 -30.22 312.67 -5.88 -36.10 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -4.36 Total: 4.86 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -1.26 Total: -0.02 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.85 Total: -38.81 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.80 Total: -21.78 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.22 -5.88 -36.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573467471.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.667 kcal (2) G-P(sol) polarization free energy of solvation -30.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds