Wall clock time and date at job start Tue Mar 31 2020 06:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46978 * 2 1 4 4 C 1.50706 * 109.47237 * 240.00580 * 2 1 3 5 5 H 1.07999 * 119.99813 * 240.00434 * 4 2 1 6 6 C 1.37871 * 119.99990 * 59.99523 * 4 2 1 7 7 N 1.31514 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99943 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47086 * 59.99963 * 8 6 4 10 10 H 1.48503 * 109.47155 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47243 * 299.99900 * 8 6 4 12 12 C 1.53002 * 109.47415 * 120.00098 * 2 1 3 13 13 N 1.46496 * 109.47037 * 300.00318 * 12 2 1 14 14 C 1.34777 * 119.99875 * 180.02562 * 13 12 2 15 15 O 1.21619 * 120.00045 * 0.26812 * 14 13 12 16 16 C 1.47216 * 119.99864 * 179.97438 * 14 13 12 17 17 C 1.37006 * 126.63827 * 179.97438 * 16 14 13 18 18 C 1.40954 * 105.46490 * 180.02562 * 17 16 14 19 19 C 1.47639 * 126.27795 * 179.97438 * 18 17 16 20 20 O 1.21484 * 119.99826 * 359.97438 * 19 18 17 21 21 O 1.34719 * 120.00007 * 179.97438 * 19 18 17 22 22 N 1.31994 * 107.44430 * 359.97438 * 18 17 16 23 23 N 1.28453 * 110.48929 * 359.71845 * 22 18 17 24 24 H 0.96998 * 125.06028 * 180.27761 * 23 22 18 25 25 H 1.09002 * 109.47045 * 299.99833 * 1 2 3 26 26 H 1.09001 * 109.46922 * 59.99626 * 1 2 3 27 27 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47006 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47600 * 299.99959 * 3 2 1 30 30 H 1.09002 * 109.46838 * 60.00684 * 3 2 1 31 31 H 0.97005 * 120.00032 * 179.97438 * 7 6 4 32 32 H 1.08992 * 109.46974 * 179.97438 * 12 2 1 33 33 H 1.08999 * 109.46297 * 60.00166 * 12 2 1 34 34 H 0.96999 * 120.00082 * 359.97438 * 13 12 2 35 35 H 1.08009 * 127.26962 * 0.02562 * 17 16 14 36 36 H 0.96693 * 117.00008 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3213 -1.1201 -4.0080 9 1 1.8259 -2.5200 -4.0079 10 1 1.8258 -0.4203 -5.2205 11 1 3.8064 -1.1205 -4.0083 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8778 -0.4909 3.6695 15 8 2.5815 -1.4766 3.7810 16 6 1.3875 0.2033 4.8715 17 6 1.6333 -0.1441 6.1738 18 6 0.9551 0.8148 6.9530 19 6 0.9144 0.8716 8.4278 20 8 1.5038 0.0366 9.0843 21 8 0.2235 1.8495 9.0454 22 7 0.3632 1.6527 6.1225 23 7 0.6036 1.3235 4.9044 24 1 0.2754 1.7970 4.1241 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8901 31 1 0.7094 1.1620 -3.4844 32 1 3.1300 -0.7216 1.2489 33 1 1.6767 -1.7489 1.2491 34 1 0.9943 0.7581 2.3564 35 1 2.2224 -0.9771 6.5284 36 1 0.2257 1.8452 10.0123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573467471.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:52 Heat of formation + Delta-G solvation = -81.081321 kcal Electronic energy + Delta-G solvation = -21452.769014 eV Core-core repulsion = 17937.638327 eV Total energy + Delta-G solvation = -3515.130687 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.97737 -41.00555 -40.61069 -38.18184 -37.13996 -35.22566 -33.44777 -32.86753 -32.08293 -27.63338 -27.56156 -27.05628 -26.25433 -24.33713 -22.11949 -21.67725 -20.75288 -20.17201 -19.12693 -17.95632 -17.77365 -17.42642 -16.90670 -16.84995 -16.51212 -16.25765 -15.84063 -14.98681 -14.95456 -14.75686 -14.52028 -14.41533 -14.02093 -13.21227 -13.10677 -12.68890 -12.64713 -12.64047 -12.51295 -12.25777 -12.13638 -12.05521 -11.49390 -11.48061 -11.15722 -10.86866 -10.71773 -10.62836 -10.39557 -10.07807 -8.02752 -6.17858 -0.08338 0.19347 1.34805 1.44742 1.47022 1.52285 1.76398 1.84891 2.04928 2.18846 2.47559 3.14859 3.21893 3.48400 4.01635 4.15180 4.39197 4.50521 4.51280 4.70198 4.93934 4.97010 5.03837 5.06559 5.19375 5.22227 5.40656 5.51028 5.59691 5.67535 5.68511 6.16687 6.20378 6.32193 6.42895 6.46102 6.85723 6.94736 6.98786 7.50265 8.95770 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.047783 B = 0.003177 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.841359 B = 8811.198078 C = 9205.980041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.051 3.949 3 C -0.124 4.124 4 C -0.530 4.530 5 H 0.047 0.953 6 C 0.031 3.969 7 N -0.898 5.898 8 Si 0.941 3.059 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.278 1.278 12 C 0.145 3.855 13 N -0.699 5.699 14 C 0.587 3.413 15 O -0.560 6.560 16 C -0.028 4.028 17 C -0.099 4.099 18 C -0.027 4.027 19 C 0.586 3.414 20 O -0.529 6.529 21 O -0.493 6.493 22 N -0.193 5.193 23 N -0.336 5.336 24 H 0.467 0.533 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.062 0.938 30 H 0.040 0.960 31 H 0.260 0.740 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.407 0.593 35 H 0.179 0.821 36 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.646 5.171 16.476 17.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.051 3.949 3 C -0.182 4.182 4 C -0.568 4.568 5 H 0.065 0.935 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.768 3.232 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.203 1.203 12 C 0.022 3.978 13 N -0.350 5.350 14 C 0.371 3.629 15 O -0.437 6.437 16 C -0.154 4.154 17 C -0.127 4.127 18 C -0.182 4.182 19 C 0.428 3.572 20 O -0.417 6.417 21 O -0.307 6.307 22 N -0.036 5.036 23 N -0.061 5.061 24 H 0.318 0.682 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.245 0.755 35 H 0.196 0.804 36 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -3.702 5.254 16.154 17.385 hybrid contribution 0.486 -0.694 -1.003 1.313 sum -3.215 4.560 15.151 16.145 Atomic orbital electron populations 1.21711 0.96993 0.98917 1.00584 1.18366 0.93327 0.93075 0.90149 1.21713 0.98154 0.97754 1.00585 1.21258 1.31775 1.12284 0.91502 0.93489 1.25397 0.95145 0.95556 1.00855 1.69882 1.36939 1.23204 1.23654 0.85877 0.78640 0.78857 0.79783 1.20322 1.21062 1.20310 1.21441 0.97745 0.95424 0.83149 1.45970 1.52296 1.31709 1.05030 1.17085 0.80244 0.83459 0.82077 1.90839 1.39144 1.27250 1.86470 1.21219 1.04261 0.94200 0.95760 1.21933 1.00776 1.00630 0.89363 1.20670 1.06772 0.98758 0.92037 1.18947 0.74651 0.77973 0.85640 1.90942 1.44108 1.40538 1.66133 1.84580 1.66845 1.49018 1.30242 1.73673 1.17911 1.22041 0.89958 1.43924 1.35128 1.19844 1.07179 0.68248 0.94114 0.91905 0.96131 0.96134 0.91900 0.94112 0.93055 0.93260 0.93265 0.75549 0.80409 0.69818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.98 8.08 71.98 0.58 -4.40 16 2 C 0.05 2.16 0.50 -52.93 -0.03 2.14 16 3 C -0.12 -4.98 8.08 71.98 0.58 -4.40 16 4 C -0.53 -26.37 8.01 25.60 0.21 -26.17 16 5 H 0.05 2.38 7.74 -2.91 -0.02 2.36 16 6 C 0.03 1.53 5.15 84.65 0.44 1.97 16 7 N -0.90 -45.71 9.35 21.44 0.20 -45.51 16 8 Si 0.94 41.05 29.54 68.60 2.03 43.07 16 9 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 10 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 12 C 0.15 5.49 4.50 86.38 0.39 5.88 16 13 N -0.70 -20.33 4.95 -466.60 -2.31 -22.64 16 14 C 0.59 17.62 7.81 86.60 0.68 18.29 16 15 O -0.56 -21.27 16.90 -4.09 -0.07 -21.34 16 16 C -0.03 -0.67 7.10 40.45 0.29 -0.38 16 17 C -0.10 -2.40 10.55 22.65 0.24 -2.17 16 18 C -0.03 -0.62 7.13 42.27 0.30 -0.32 16 19 C 0.59 12.21 8.34 70.30 0.59 12.80 16 20 O -0.53 -13.56 17.70 19.89 0.35 -13.21 16 21 O -0.49 -6.94 13.44 -56.29 -0.76 -7.70 16 22 N -0.19 -4.01 12.22 -48.49 -0.59 -4.60 16 23 N -0.34 -6.11 6.84 -48.69 -0.33 -6.44 16 24 H 0.47 5.40 8.19 -220.00 -1.80 3.60 16 25 H 0.04 1.28 6.86 -2.39 -0.02 1.27 16 26 H 0.06 2.87 6.07 -2.39 -0.01 2.86 16 27 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.06 2.87 6.07 -2.39 -0.01 2.86 16 30 H 0.04 1.28 6.86 -2.39 -0.02 1.26 16 31 H 0.26 12.88 8.31 -92.70 -0.77 12.11 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.41 9.43 5.32 -92.71 -0.49 8.93 16 35 H 0.18 4.30 8.06 -2.91 -0.02 4.28 16 36 H 0.44 1.50 9.11 -74.06 -0.67 0.83 16 Total: -1.00 -64.46 312.67 0.97 -63.49 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -1.80 Total: 11.64 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 4.26 Total: 3.25 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -3.04 Total: -79.20 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -0.47 Total: -42.25 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.07 kcal Total: -64.46 0.97 -63.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573467471.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.588 kcal (2) G-P(sol) polarization free energy of solvation -64.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds