Wall clock time and date at job start Tue Mar 31 2020 05:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99604 * 2 1 4 4 H 1.48499 * 109.47385 * 269.99353 * 3 2 1 5 5 H 1.48497 * 109.47506 * 29.99690 * 3 2 1 6 6 H 1.48504 * 109.46955 * 149.99922 * 3 2 1 7 7 C 1.37877 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00160 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99833 * 0.02562 * 7 2 1 10 10 C 1.53117 * 109.52162 * 180.02562 * 9 7 2 11 11 C 1.53044 * 109.27792 * 177.62499 * 10 9 7 12 12 N 1.46847 * 109.51335 * 300.82256 * 11 10 9 13 13 C 1.46901 * 111.00144 * 185.83239 * 12 11 10 14 14 C 1.50696 * 109.47104 * 170.00196 * 13 12 11 15 15 N 1.30927 * 126.44396 * 89.71746 * 14 13 12 16 16 C 1.35252 * 105.58231 * 179.86111 * 15 14 13 17 17 C 1.48365 * 126.41051 * 180.12671 * 16 15 14 18 18 O 1.21390 * 120.00247 * 0.30058 * 17 16 15 19 19 O 1.34644 * 119.99466 * 180.30434 * 17 16 15 20 20 N 1.30692 * 107.17311 * 0.40349 * 16 15 14 21 21 O 1.21281 * 110.11140 * 359.74523 * 20 16 15 22 22 C 1.46830 * 111.21086 * 61.74856 * 12 11 10 23 23 C 1.53038 * 109.51757 * 298.25173 * 22 12 11 24 24 H 0.96999 * 120.00049 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.52694 * 59.87118 * 9 7 2 26 26 H 1.09001 * 109.50874 * 57.68679 * 10 9 7 27 27 H 1.09002 * 109.53469 * 297.57800 * 10 9 7 28 28 H 1.09002 * 109.46396 * 60.83566 * 11 10 9 29 29 H 1.08994 * 109.46485 * 180.81491 * 11 10 9 30 30 H 1.09001 * 109.46985 * 290.00439 * 13 12 11 31 31 H 1.09002 * 109.46593 * 50.00429 * 13 12 11 32 32 H 0.96701 * 116.99488 * 180.02562 * 19 17 16 33 33 H 1.08995 * 109.46742 * 178.23410 * 22 12 11 34 34 H 1.09004 * 109.45381 * 58.25744 * 22 12 11 35 35 H 1.08997 * 109.50308 * 299.23764 * 23 22 12 36 36 H 1.08996 * 109.53785 * 179.13596 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2452 -3.6638 0.0018 11 6 1.4752 -4.9851 0.0617 12 7 0.6525 -5.0187 1.2776 13 6 0.0058 -6.3278 1.4396 14 6 -0.6243 -6.4110 2.8060 15 7 -1.8436 -6.0548 3.1232 16 6 -1.9642 -6.3102 4.4459 17 6 -3.1683 -6.0787 5.2812 18 8 -4.1755 -5.6216 4.7810 19 8 -3.1438 -6.3757 6.5943 20 7 -0.8196 -6.7933 4.8516 21 8 -0.0415 -6.8572 3.9235 22 6 -0.3413 -3.9379 1.2766 23 6 0.3743 -2.5853 1.2529 24 1 -0.4850 0.8400 -0.0004 25 1 0.6227 -2.5570 -0.8882 26 1 2.8985 -3.5837 0.8706 27 1 2.8442 -3.6327 -0.9083 28 1 0.8324 -5.0709 -0.8144 29 1 2.1805 -5.8160 0.0774 30 1 -0.7631 -6.4500 0.6768 31 1 0.7508 -7.1165 1.3343 32 1 -3.9524 -6.2080 7.0974 33 1 -0.9554 -4.0082 2.1744 34 1 -0.9755 -4.0286 0.3947 35 1 0.9983 -2.4882 2.1413 36 1 -0.3632 -1.7829 1.2367 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574240918.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:40 Heat of formation + Delta-G solvation = -11.066265 kcal Electronic energy + Delta-G solvation = -21907.723534 eV Core-core repulsion = 18395.628928 eV Total energy + Delta-G solvation = -3512.094606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.94711 -40.45426 -38.53689 -36.69062 -35.95290 -34.52894 -32.85603 -31.18943 -29.91610 -27.66259 -26.63960 -25.00511 -23.32327 -22.40641 -21.99180 -21.22370 -18.73937 -18.49438 -18.43369 -18.13144 -16.85559 -16.42444 -15.99550 -15.40352 -15.21857 -14.62782 -14.47338 -14.02117 -13.23623 -13.11267 -12.87897 -12.55007 -12.27495 -12.26629 -11.96042 -11.86676 -11.56887 -11.43018 -11.28238 -11.00319 -10.81265 -10.55492 -10.41085 -10.26460 -10.03323 -9.49499 -9.03293 -8.76855 -8.31350 -8.10470 -5.98335 -4.04086 0.46569 1.26543 1.92041 2.46122 2.54048 3.31120 3.38400 3.41380 3.52739 3.95735 4.26167 4.44805 4.77684 5.00735 5.12441 5.32168 5.34322 5.51784 5.59761 5.73008 5.88602 5.96071 6.11039 6.18871 6.52711 6.53320 6.77007 6.95205 6.99529 7.26986 7.29721 7.42958 7.49463 7.74689 7.77148 8.00044 8.11947 8.45558 8.99648 9.60828 11.07882 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021361 B = 0.004102 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.494821 B = 6824.688881 C = 7661.512491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.047 3.953 10 C -0.107 4.107 11 C 0.063 3.937 12 N -0.533 5.533 13 C 0.137 3.863 14 C 0.218 3.782 15 N -0.434 5.434 16 C 0.140 3.860 17 C 0.585 3.415 18 O -0.468 6.468 19 O -0.495 6.495 20 N -0.324 5.324 21 O 0.114 5.886 22 C 0.051 3.949 23 C -0.104 4.104 24 H 0.260 0.740 25 H 0.023 0.977 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.033 0.967 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.426 0.574 33 H 0.059 0.941 34 H 0.033 0.967 35 H 0.042 0.958 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.618 -15.484 6.878 17.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.028 3.972 10 C -0.144 4.144 11 C -0.064 4.064 12 N -0.260 5.260 13 C 0.007 3.993 14 C -0.003 4.003 15 N -0.169 5.169 16 C -0.131 4.131 17 C 0.423 3.577 18 O -0.350 6.350 19 O -0.306 6.306 20 N -0.026 5.026 21 O 0.042 5.958 22 C -0.076 4.076 23 C -0.142 4.142 24 H 0.070 0.930 25 H 0.041 0.959 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.132 0.868 32 H 0.287 0.713 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.800 -15.259 7.743 17.339 hybrid contribution -0.596 0.992 -0.343 1.207 sum -3.396 -14.267 7.400 16.427 Atomic orbital electron populations 1.69868 1.05880 1.26409 1.50865 1.24971 0.94824 0.99051 0.95141 0.86636 0.79919 0.83662 0.78022 1.20769 1.21322 1.19937 1.21185 0.92892 0.90596 1.50351 0.92675 1.18705 0.92677 0.91871 0.93928 1.21698 0.98728 0.93296 1.00723 1.22178 0.95470 1.00169 0.88536 1.62069 1.23608 1.00225 1.40098 1.20673 0.98842 0.96227 0.83553 1.28966 0.86599 0.91629 0.93116 1.72090 1.16601 1.19178 1.09022 1.23952 0.93766 1.05187 0.90174 1.18329 0.84070 0.74877 0.80464 1.90984 1.31469 1.39067 1.73489 1.84531 1.46341 1.79367 1.20395 1.75058 1.01101 1.15996 1.10492 1.85354 1.36810 1.59566 1.14104 1.22450 0.92785 0.92695 0.99688 1.21684 1.00267 0.92740 0.99514 0.93031 0.95925 0.92238 0.92637 0.94849 0.91574 0.89701 0.86760 0.71319 0.92299 0.94871 0.93880 0.88699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.26 11.37 55.43 0.63 -24.63 16 2 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.51 -13.74 8.56 -34.44 -0.29 -14.03 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.11 2.16 -91.65 -0.20 0.91 16 10 C -0.11 -2.04 5.32 -26.65 -0.14 -2.18 16 11 C 0.06 0.96 5.46 -3.83 -0.02 0.94 16 12 N -0.53 -8.35 4.65 -236.13 -1.10 -9.45 16 13 C 0.14 1.59 5.59 -4.98 -0.03 1.56 16 14 C 0.22 2.92 7.12 -13.01 -0.09 2.83 16 15 N -0.43 -6.76 10.68 -9.94 -0.11 -6.86 16 16 C 0.14 2.07 8.04 -156.17 -1.26 0.82 16 17 C 0.59 7.73 8.37 34.90 0.29 8.02 16 18 O -0.47 -7.30 17.89 -19.18 -0.34 -7.64 16 19 O -0.49 -4.56 13.44 -40.34 -0.54 -5.10 16 20 N -0.32 -4.60 12.20 30.93 0.38 -4.22 16 21 O 0.11 1.51 11.29 17.96 0.20 1.71 16 22 C 0.05 0.97 5.31 -3.84 -0.02 0.95 16 23 C -0.10 -2.41 5.12 -26.65 -0.14 -2.54 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.80 8.01 -51.93 -0.42 0.38 16 30 H 0.09 0.91 8.12 -51.93 -0.42 0.49 16 31 H 0.11 0.92 7.99 -51.93 -0.41 0.50 16 32 H 0.43 1.47 9.11 45.56 0.42 1.89 16 33 H 0.06 1.14 6.43 -51.93 -0.33 0.80 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 2.50 6.17 -51.93 -0.32 2.18 16 LS Contribution 309.47 15.07 4.66 4.66 Total: -1.00 -32.02 309.47 -6.80 -38.82 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -3.57 Total: -2.26 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -1.99 Total: -1.15 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -0.20 Total: -45.17 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -0.68 Total: -11.03 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.02 -6.80 -38.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574240918.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.754 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds