Wall clock time and date at job start Tue Mar 31 2020 05:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99604 * 2 1 4 4 H 1.48499 * 109.47385 * 269.99353 * 3 2 1 5 5 H 1.48497 * 109.47506 * 29.99690 * 3 2 1 6 6 H 1.48504 * 109.46955 * 149.99922 * 3 2 1 7 7 C 1.37877 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00160 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99833 * 0.02562 * 7 2 1 10 10 C 1.53117 * 109.52162 * 180.02562 * 9 7 2 11 11 C 1.53044 * 109.27792 * 177.62499 * 10 9 7 12 12 N 1.46847 * 109.51335 * 300.82256 * 11 10 9 13 13 C 1.46901 * 111.00144 * 185.83239 * 12 11 10 14 14 C 1.50696 * 109.47104 * 170.00196 * 13 12 11 15 15 N 1.30927 * 126.44396 * 89.71746 * 14 13 12 16 16 C 1.35252 * 105.58231 * 179.86111 * 15 14 13 17 17 C 1.48365 * 126.41051 * 180.12671 * 16 15 14 18 18 O 1.21390 * 120.00247 * 0.30058 * 17 16 15 19 19 O 1.34644 * 119.99466 * 180.30434 * 17 16 15 20 20 N 1.30692 * 107.17311 * 0.40349 * 16 15 14 21 21 O 1.21281 * 110.11140 * 359.74523 * 20 16 15 22 22 C 1.46830 * 111.21086 * 61.74856 * 12 11 10 23 23 C 1.53038 * 109.51757 * 298.25173 * 22 12 11 24 24 H 0.96999 * 120.00049 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.52694 * 59.87118 * 9 7 2 26 26 H 1.09001 * 109.50874 * 57.68679 * 10 9 7 27 27 H 1.09002 * 109.53469 * 297.57800 * 10 9 7 28 28 H 1.09002 * 109.46396 * 60.83566 * 11 10 9 29 29 H 1.08994 * 109.46485 * 180.81491 * 11 10 9 30 30 H 1.09001 * 109.46985 * 290.00439 * 13 12 11 31 31 H 1.09002 * 109.46593 * 50.00429 * 13 12 11 32 32 H 0.96701 * 116.99488 * 180.02562 * 19 17 16 33 33 H 1.08995 * 109.46742 * 178.23410 * 22 12 11 34 34 H 1.09004 * 109.45381 * 58.25744 * 22 12 11 35 35 H 1.08997 * 109.50308 * 299.23764 * 23 22 12 36 36 H 1.08996 * 109.53785 * 179.13596 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2452 -3.6638 0.0018 11 6 1.4752 -4.9851 0.0617 12 7 0.6525 -5.0187 1.2776 13 6 0.0058 -6.3278 1.4396 14 6 -0.6243 -6.4110 2.8060 15 7 -1.8436 -6.0548 3.1232 16 6 -1.9642 -6.3102 4.4459 17 6 -3.1683 -6.0787 5.2812 18 8 -4.1755 -5.6216 4.7810 19 8 -3.1438 -6.3757 6.5943 20 7 -0.8196 -6.7933 4.8516 21 8 -0.0415 -6.8572 3.9235 22 6 -0.3413 -3.9379 1.2766 23 6 0.3743 -2.5853 1.2529 24 1 -0.4850 0.8400 -0.0004 25 1 0.6227 -2.5570 -0.8882 26 1 2.8985 -3.5837 0.8706 27 1 2.8442 -3.6327 -0.9083 28 1 0.8324 -5.0709 -0.8144 29 1 2.1805 -5.8160 0.0774 30 1 -0.7631 -6.4500 0.6768 31 1 0.7508 -7.1165 1.3343 32 1 -3.9524 -6.2080 7.0974 33 1 -0.9554 -4.0082 2.1744 34 1 -0.9755 -4.0286 0.3947 35 1 0.9983 -2.4882 2.1413 36 1 -0.3632 -1.7829 1.2367 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574240918.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:39 Heat of formation + Delta-G solvation = -36.268833 kcal Electronic energy + Delta-G solvation = -21908.816399 eV Core-core repulsion = 18395.628928 eV Total energy + Delta-G solvation = -3513.187471 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -47.02061 -41.42710 -39.92735 -37.63027 -37.06298 -36.05722 -34.32217 -32.81392 -31.46352 -29.04852 -27.70859 -26.69311 -24.46970 -23.87284 -23.39414 -22.45407 -20.35907 -19.60493 -19.38551 -19.17512 -18.41465 -17.88436 -17.02119 -16.84891 -16.41257 -16.23957 -15.82729 -14.97295 -14.84681 -14.56972 -14.26222 -14.19661 -13.70477 -13.35400 -13.15795 -13.04063 -12.89155 -12.83226 -12.56309 -12.54836 -12.38752 -12.30193 -12.02532 -11.84014 -11.50286 -11.32540 -10.77217 -10.65351 -10.36828 -9.36262 -8.06778 -6.19744 -0.58385 0.22064 1.00540 1.40998 1.42518 1.43224 1.51548 1.52012 2.44659 2.48401 2.93712 3.11715 3.20958 3.84836 4.02175 4.15605 4.20805 4.38337 4.45156 4.52299 4.56869 4.67774 4.82443 4.90426 5.04421 5.10796 5.13303 5.25691 5.35715 5.58254 5.64271 5.95104 5.98455 6.15149 6.25311 6.42826 6.50032 6.73748 6.93809 7.48616 8.97493 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021361 B = 0.004102 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.494821 B = 6824.688881 C = 7661.512491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.010 3.990 3 Si 0.950 3.050 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.530 4.530 8 H 0.054 0.946 9 C 0.042 3.958 10 C -0.102 4.102 11 C 0.070 3.930 12 N -0.541 5.541 13 C 0.139 3.861 14 C 0.223 3.777 15 N -0.465 5.465 16 C 0.123 3.877 17 C 0.592 3.408 18 O -0.500 6.500 19 O -0.482 6.482 20 N -0.327 5.327 21 O 0.125 5.875 22 C 0.068 3.932 23 C -0.095 4.095 24 H 0.258 0.742 25 H -0.007 1.007 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.165 0.835 32 H 0.450 0.550 33 H 0.053 0.947 34 H 0.027 0.973 35 H 0.025 0.975 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.346 -17.395 7.016 18.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.776 3.224 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.569 4.569 8 H 0.072 0.928 9 C 0.023 3.977 10 C -0.140 4.140 11 C -0.057 4.057 12 N -0.268 5.268 13 C 0.010 3.990 14 C 0.003 3.997 15 N -0.199 5.199 16 C -0.147 4.147 17 C 0.431 3.569 18 O -0.385 6.385 19 O -0.296 6.296 20 N -0.028 5.028 21 O 0.051 5.949 22 C -0.060 4.060 23 C -0.134 4.134 24 H 0.067 0.933 25 H 0.011 0.989 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.133 0.867 30 H 0.118 0.882 31 H 0.182 0.818 32 H 0.316 0.684 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.526 -17.191 7.915 18.987 hybrid contribution -0.962 1.563 -0.333 1.865 sum -2.488 -15.628 7.581 17.547 Atomic orbital electron populations 1.70024 1.07215 1.26901 1.51843 1.25741 0.95583 1.02372 0.95073 0.85684 0.78808 0.79735 0.78208 1.20052 1.21414 1.19212 1.21642 0.93125 0.92301 1.49785 0.92811 1.18695 0.93280 0.93027 0.92668 1.21563 0.97859 0.93749 1.00778 1.22155 0.95917 0.99176 0.88411 1.61888 1.22992 1.01220 1.40656 1.20990 1.00540 0.94875 0.82584 1.29310 0.86113 0.90725 0.93575 1.72077 1.18013 1.20095 1.09739 1.24261 0.94487 1.05620 0.90364 1.18245 0.83195 0.74157 0.81296 1.90969 1.32400 1.40804 1.74342 1.84493 1.48094 1.78407 1.18621 1.75030 1.00993 1.15917 1.10867 1.85338 1.36373 1.59218 1.13978 1.22047 0.92823 0.91973 0.99119 1.21418 0.99113 0.94401 0.98461 0.93291 0.98866 0.92908 0.91914 0.94270 0.86723 0.88163 0.81784 0.68428 0.92881 0.95464 0.95570 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.97 11.37 21.45 0.24 -53.73 16 2 C 0.01 0.58 5.31 84.65 0.45 1.03 16 3 Si 0.95 43.97 29.54 68.60 2.03 45.99 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.53 -28.99 8.56 25.60 0.22 -28.77 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.04 2.03 2.16 -11.46 -0.02 2.01 16 10 C -0.10 -3.75 5.32 30.65 0.16 -3.59 16 11 C 0.07 1.87 5.46 86.33 0.47 2.34 16 12 N -0.54 -15.50 4.65 -900.96 -4.19 -19.68 16 13 C 0.14 2.68 5.59 85.56 0.48 3.15 16 14 C 0.22 5.47 7.12 88.36 0.63 6.10 16 15 N -0.46 -14.00 10.68 -302.76 -3.23 -17.24 16 16 C 0.12 3.55 8.04 137.29 1.10 4.65 16 17 C 0.59 15.30 8.37 70.52 0.59 15.89 16 18 O -0.50 -15.62 17.89 20.19 0.36 -15.26 16 19 O -0.48 -8.13 13.44 -55.53 -0.75 -8.88 16 20 N -0.33 -8.78 12.20 -59.33 -0.72 -9.50 16 21 O 0.13 3.02 11.29 74.33 0.84 3.86 16 22 C 0.07 2.58 5.31 86.33 0.46 3.04 16 23 C -0.10 -4.57 5.12 30.65 0.16 -4.41 16 24 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 25 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 27 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.11 2.07 8.01 -2.39 -0.02 2.06 16 30 H 0.10 1.75 8.12 -2.39 -0.02 1.73 16 31 H 0.16 1.60 7.99 -2.39 -0.02 1.58 16 32 H 0.45 2.28 9.11 -74.06 -0.67 1.60 16 33 H 0.05 2.06 6.43 -2.39 -0.02 2.05 16 34 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.05 3.04 6.17 -2.39 -0.01 3.02 16 Total: -1.00 -72.49 309.47 -0.28 -72.76 By element: Atomic # 1 Polarization: -0.22 SS G_CDS: 0.45 Total: 0.23 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 4.69 Total: 1.44 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -7.90 Total: -100.15 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.45 Total: -20.28 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -72.49 -0.28 -72.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574240918.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.495 kcal (2) G-P(sol) polarization free energy of solvation -72.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds