Wall clock time and date at job start Tue Mar 31 2020 05:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47678 * 2 1 4 4 C 1.50699 * 109.46835 * 239.99596 * 2 1 3 5 5 N 1.30872 * 125.41845 * 264.69771 * 4 2 1 6 6 C 1.33301 * 109.70078 * 179.86519 * 5 4 2 7 7 C 1.36776 * 107.78171 * 0.39858 * 6 5 4 8 8 C 1.46634 * 126.85228 * 179.76621 * 7 6 5 9 9 O 1.21723 * 120.00142 * 6.20385 * 8 7 6 10 10 N 1.34783 * 120.00053 * 186.20741 * 8 7 6 11 11 C 1.36876 * 119.99959 * 185.14285 * 10 8 7 12 12 H 1.08001 * 120.00158 * 341.61263 * 11 10 8 13 13 C 1.39015 * 120.00262 * 161.62255 * 11 10 8 14 14 N 1.31399 * 119.99380 * 340.08933 * 13 11 10 15 15 Si 1.86801 * 120.00489 * 160.09623 * 13 11 10 16 16 H 1.48503 * 109.47049 * 59.99434 * 15 13 11 17 17 H 1.48498 * 109.47118 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46846 * 299.99883 * 15 13 11 19 19 C 1.46494 * 119.99795 * 5.13293 * 10 8 7 20 20 C 1.50699 * 109.47586 * 275.49984 * 19 10 8 21 21 O 1.20827 * 119.99735 * 359.97438 * 20 19 10 22 22 O 1.34229 * 120.00010 * 180.02562 * 20 19 10 23 23 N 1.34555 * 125.40894 * 85.00888 * 4 2 1 24 24 H 0.97003 * 126.47333 * 359.93265 * 23 4 2 25 25 H 1.09002 * 109.47048 * 300.00534 * 1 2 3 26 26 H 1.09000 * 109.47557 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47003 * 59.99357 * 1 2 3 28 28 H 1.09004 * 109.47003 * 120.00643 * 2 1 3 29 29 H 1.09000 * 109.46796 * 59.99673 * 3 2 1 30 30 H 1.08997 * 109.47128 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46890 * 299.99922 * 3 2 1 32 32 H 1.08004 * 126.10699 * 180.15447 * 6 5 4 33 33 H 0.97005 * 119.99178 * 180.02562 * 14 13 11 34 34 H 1.09003 * 109.47283 * 35.50613 * 19 10 8 35 35 H 1.09002 * 109.47073 * 155.50187 * 19 10 8 36 36 H 0.96705 * 116.99910 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7105 -1.2304 5 7 2.3779 -1.9713 -1.2902 6 6 2.7714 -2.2712 -2.5280 7 6 2.6754 -1.1351 -3.2836 8 6 3.0082 -0.9933 -4.7046 9 8 3.3096 -1.9737 -5.3599 10 7 2.9805 0.2228 -5.2851 11 6 3.1878 0.3427 -6.6328 12 1 3.6580 -0.4606 -7.1804 13 6 2.7932 1.4987 -7.2966 14 7 1.8967 2.2929 -6.7563 15 14 3.5373 1.9227 -8.9567 16 1 3.2422 0.8350 -9.9238 17 1 2.9532 3.1955 -9.4504 18 1 5.0079 2.0741 -8.8158 19 6 2.7284 1.4162 -4.4737 20 6 1.2426 1.6080 -4.3104 21 8 0.4732 0.8281 -4.8200 22 8 0.7740 2.6458 -3.5997 23 7 2.2021 -0.1479 -2.4408 24 1 2.0251 0.7761 -2.6772 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5140 -0.8900 28 1 1.8933 -0.5140 0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1301 1.4423 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 3.1096 -3.2376 -2.8718 33 1 1.6212 3.0994 -7.2197 34 1 3.1888 1.2930 -3.4934 35 1 3.1551 2.2887 -4.9684 36 1 -0.1865 2.7271 -3.5225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592008744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:51 Heat of formation + Delta-G solvation = -46.823819 kcal Electronic energy + Delta-G solvation = -23448.239594 eV Core-core repulsion = 19934.594424 eV Total energy + Delta-G solvation = -3513.645170 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.99983 -39.64937 -38.17023 -35.60374 -35.31314 -34.78989 -32.78278 -31.50789 -28.78285 -28.14920 -27.26656 -25.39314 -23.11906 -21.74652 -21.26545 -20.47912 -19.32301 -17.58301 -17.40528 -16.90803 -16.03347 -15.96798 -15.14208 -14.85476 -14.73606 -14.61836 -14.20107 -13.92852 -13.45417 -13.20990 -12.88821 -12.84155 -12.36172 -12.24037 -11.83096 -11.78936 -11.52104 -11.27708 -11.12365 -11.06459 -10.74195 -10.63593 -10.53046 -9.95538 -9.84868 -9.70260 -9.30022 -8.92325 -8.18529 -7.97137 -6.67677 -4.10337 1.89990 2.86860 3.08415 3.13246 3.16911 3.29687 3.39758 3.57744 3.96403 4.19729 4.38248 4.49311 4.78346 4.84828 5.01999 5.25689 5.34730 5.35030 5.48604 5.66256 5.68844 5.71134 5.85255 5.92071 6.06237 6.14154 6.18814 6.20270 6.33796 7.03143 7.13442 7.34309 7.53075 7.75966 8.12714 8.34755 8.65190 8.83629 9.03647 9.57087 10.41713 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023121 B = 0.006774 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.731357 B = 4132.576338 C = 4950.972826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.010 4.010 3 C -0.157 4.157 4 C 0.212 3.788 5 N -0.493 5.493 6 C 0.037 3.963 7 C -0.047 4.047 8 C 0.530 3.470 9 O -0.556 6.556 10 N -0.423 5.423 11 C -0.305 4.305 12 H 0.114 0.886 13 C 0.030 3.970 14 N -0.881 5.881 15 Si 0.938 3.062 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.270 1.270 19 C 0.131 3.869 20 C 0.470 3.530 21 O -0.482 6.482 22 O -0.535 6.535 23 N -0.558 5.558 24 H 0.417 0.583 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.179 0.821 33 H 0.275 0.725 34 H 0.075 0.925 35 H 0.138 0.862 36 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.033 4.870 11.762 12.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.031 4.031 3 C -0.215 4.215 4 C -0.052 4.052 5 N -0.213 5.213 6 C -0.116 4.116 7 C -0.164 4.164 8 C 0.319 3.681 9 O -0.438 6.438 10 N -0.141 5.141 11 C -0.432 4.432 12 H 0.132 0.868 13 C -0.174 4.174 14 N -0.520 5.520 15 Si 0.764 3.236 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.196 1.196 19 C 0.003 3.997 20 C 0.308 3.692 21 O -0.365 6.365 22 O -0.348 6.348 23 N -0.172 5.172 24 H 0.264 0.736 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.121 0.879 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.197 0.803 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.155 0.845 36 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -0.769 3.727 11.756 12.356 hybrid contribution -0.721 1.547 -1.709 2.416 sum -1.490 5.274 10.046 11.444 Atomic orbital electron populations 1.21852 0.93570 1.02813 1.02067 1.19610 0.96047 0.94888 0.92520 1.21959 1.01838 0.94877 1.02849 1.23185 1.03687 0.90546 0.87736 1.70017 1.17990 1.11701 1.21595 1.22453 1.02855 0.98054 0.88232 1.21766 1.10781 0.90398 0.93418 1.16699 0.83823 0.83673 0.83898 1.90690 1.52915 1.36958 1.63252 1.43327 1.60315 1.02412 1.08073 1.19757 1.37367 1.04023 0.82055 0.86791 1.25350 0.94820 0.96714 1.00484 1.69690 1.26538 1.14841 1.40973 0.85796 0.79240 0.77917 0.80689 1.19503 1.20851 1.19553 1.21042 0.88456 0.94479 0.95717 1.23821 0.93340 0.77543 0.74457 1.90674 1.58418 1.44906 1.42530 1.84522 1.30394 1.50420 1.69417 1.44348 1.50102 1.12863 1.09874 0.73581 0.91520 0.91777 0.92758 0.87921 0.90990 0.91888 0.92382 0.80347 0.91431 0.90768 0.84486 0.74535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.18 37.16 0.34 -1.23 16 2 C -0.01 -0.12 3.39 -91.77 -0.31 -0.44 16 3 C -0.16 -1.57 8.93 37.16 0.33 -1.24 16 4 C 0.21 3.54 6.85 -155.55 -1.06 2.47 16 5 N -0.49 -9.27 11.20 -10.54 -0.12 -9.39 16 6 C 0.04 0.74 11.67 -17.44 -0.20 0.54 16 7 C -0.05 -1.02 6.59 -82.15 -0.54 -1.56 16 8 C 0.53 13.47 7.40 -12.87 -0.10 13.38 16 9 O -0.56 -15.60 16.55 5.17 0.09 -15.51 16 10 N -0.42 -10.61 2.16 -117.60 -0.25 -10.86 16 11 C -0.31 -8.16 9.34 -15.01 -0.14 -8.30 16 12 H 0.11 3.17 7.35 -52.49 -0.39 2.78 16 13 C 0.03 0.74 4.90 -17.45 -0.09 0.65 16 14 N -0.88 -22.07 9.12 55.50 0.51 -21.56 16 15 Si 0.94 19.71 29.60 -169.99 -5.03 14.68 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 17 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 19 C 0.13 2.77 4.74 -5.20 -0.02 2.74 16 20 C 0.47 9.81 3.91 36.01 0.14 9.95 16 21 O -0.48 -12.13 16.68 -18.75 -0.31 -12.44 16 22 O -0.54 -8.55 13.33 -39.25 -0.52 -9.07 16 23 N -0.56 -10.25 4.57 -7.01 -0.03 -10.28 16 24 H 0.42 7.23 2.76 -40.82 -0.11 7.12 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.61 7.40 -51.93 -0.38 0.23 16 32 H 0.18 3.35 8.06 -52.48 -0.42 2.93 16 33 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 34 H 0.07 1.35 5.45 -51.93 -0.28 1.07 16 35 H 0.14 2.94 6.48 -51.93 -0.34 2.60 16 36 H 0.40 4.79 9.10 45.56 0.41 5.20 16 LS Contribution 305.19 15.07 4.60 4.60 Total: -1.00 -33.07 305.19 -5.92 -38.99 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -3.18 Total: 13.89 kcal Atomic # 6 Polarization: 18.62 SS G_CDS: -1.65 Total: 16.97 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 0.10 Total: -52.10 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -0.75 Total: -37.03 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.07 -5.92 -38.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592008744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.838 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds