Wall clock time and date at job start Tue Mar 31 2020 05:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38036 * 126.29302 * 2 1 4 4 C 1.47436 * 126.41450 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00091 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99867 * 179.72839 * 4 3 2 7 7 C 1.46506 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47041 * 179.97438 * 7 6 4 9 9 C 1.50696 * 109.46779 * 179.97438 * 8 7 6 10 10 O 1.20828 * 120.00167 * 0.02562 * 9 8 7 11 11 O 1.34235 * 119.99813 * 179.97438 * 9 8 7 12 12 C 1.41286 * 107.17192 * 180.24871 * 3 2 1 13 13 N 1.30448 * 108.02337 * 359.61207 * 12 3 2 14 14 N 1.34259 * 126.28729 * 180.02562 * 2 1 3 15 15 C 1.46503 * 125.75762 * 359.97438 * 14 2 1 16 16 C 1.50696 * 109.46974 * 90.00112 * 15 14 2 17 17 H 1.08001 * 120.00163 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99873 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99784 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99944 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47036 * 89.99828 * 20 18 16 22 22 H 1.48501 * 109.47338 * 209.99683 * 20 18 16 23 23 H 1.48499 * 109.47125 * 329.99973 * 20 18 16 24 24 H 1.09000 * 109.47568 * 89.97502 * 1 2 3 25 25 H 1.09002 * 109.47528 * 209.97528 * 1 2 3 26 26 H 1.08998 * 109.46953 * 329.97793 * 1 2 3 27 27 H 0.97004 * 120.00018 * 359.97438 * 6 4 3 28 28 H 1.09004 * 109.46587 * 299.99661 * 7 6 4 29 29 H 1.08993 * 109.47306 * 59.99553 * 7 6 4 30 30 H 1.08999 * 109.46737 * 299.99175 * 8 7 6 31 31 H 1.08993 * 109.47411 * 59.99647 * 8 7 6 32 32 H 0.96704 * 117.00008 * 179.97438 * 11 9 8 33 33 H 1.08000 * 125.99145 * 179.77305 * 12 3 2 34 34 H 1.09004 * 109.46911 * 210.00324 * 15 14 2 35 35 H 1.09002 * 109.46643 * 329.99944 * 15 14 2 36 36 H 0.97003 * 119.99565 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.7999 3.5106 0.0051 7 6 2.3644 4.9095 0.0051 8 6 3.5902 5.8251 0.0127 9 6 3.1422 7.2640 0.0121 10 8 1.9635 7.5298 0.0067 11 8 4.0526 8.2504 0.0186 12 6 3.6589 0.6498 -0.0059 13 7 3.6340 -0.6545 -0.0007 14 7 2.3016 -1.0822 -0.0005 15 6 1.8500 -2.4759 -0.0006 16 6 1.6946 -2.9535 -1.4214 17 1 1.9103 -2.2855 -2.2423 18 6 1.2772 -4.2431 -1.6734 19 7 1.1411 -4.6597 -2.9134 20 14 0.9035 -5.3981 -0.2537 21 1 -0.5276 -5.2730 0.1227 22 1 1.1865 -6.7965 -0.6655 23 1 1.7543 -5.0430 0.9105 24 1 -0.3634 0.0004 -1.0276 25 1 -0.3634 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 3.7462 3.2972 0.0098 28 1 1.7699 5.1049 -0.8874 29 1 1.7618 5.1023 0.8925 30 1 4.1842 5.6296 0.9054 31 1 4.1932 5.6324 -0.8745 32 1 3.7173 9.1574 0.0175 33 1 4.5448 1.2675 -0.0108 34 1 2.5848 -3.0960 0.5130 35 1 0.8915 -2.5472 0.5136 36 1 0.8471 -5.5669 -3.0907 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594256882.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:03 Heat of formation + Delta-G solvation = -63.873271 kcal Electronic energy + Delta-G solvation = -21033.622769 eV Core-core repulsion = 17519.238279 eV Total energy + Delta-G solvation = -3514.384489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.91197 -40.62490 -38.86003 -36.61447 -35.19945 -33.92427 -32.27669 -31.55811 -31.05495 -27.97179 -26.85282 -24.96298 -23.02577 -22.03186 -21.40522 -19.97202 -19.02048 -18.46916 -17.27980 -17.21799 -16.78121 -16.69634 -15.39544 -15.23336 -15.13144 -14.69790 -14.26546 -13.93751 -13.55297 -13.47630 -13.24006 -12.69618 -12.57189 -12.30466 -12.24641 -12.08313 -11.98460 -11.81000 -11.61192 -11.23213 -11.01546 -10.85144 -10.42094 -10.26143 -9.80834 -9.49914 -9.06679 -8.85992 -8.67491 -7.99446 -6.33950 -4.38751 1.80554 2.10199 2.44592 2.70357 3.06156 3.12241 3.17423 3.23114 3.58555 3.84932 4.14782 4.23707 4.59529 4.85875 4.89918 5.03548 5.07905 5.16345 5.44683 5.55585 5.62360 5.73779 5.86100 6.03829 6.09376 6.25262 6.39700 6.43304 6.54383 6.58113 6.99079 7.17152 7.47553 7.53677 7.64238 8.18647 8.25209 8.53678 8.69208 9.19877 10.78283 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.044568 B = 0.002969 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.097891 B = 9428.150471 C = 9624.960233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.170 3.830 3 C -0.330 4.330 4 C 0.605 3.395 5 O -0.550 6.550 6 N -0.737 5.737 7 C 0.134 3.866 8 C -0.127 4.127 9 C 0.484 3.516 10 O -0.509 6.509 11 O -0.518 6.518 12 C 0.061 3.939 13 N -0.292 5.292 14 N -0.314 5.314 15 C 0.224 3.776 16 C -0.546 4.546 17 H 0.082 0.918 18 C 0.081 3.919 19 N -0.883 5.883 20 Si 0.873 3.127 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.263 1.263 24 H 0.087 0.913 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.399 0.601 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.412 0.588 33 H 0.178 0.822 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.973 19.407 7.776 21.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.033 3.967 3 C -0.346 4.346 4 C 0.396 3.604 5 O -0.429 6.429 6 N -0.390 5.390 7 C 0.010 3.990 8 C -0.165 4.165 9 C 0.326 3.674 10 O -0.396 6.396 11 O -0.330 6.330 12 C -0.126 4.126 13 N -0.112 5.112 14 N -0.090 5.090 15 C 0.106 3.894 16 C -0.584 4.584 17 H 0.100 0.900 18 C -0.124 4.124 19 N -0.519 5.519 20 Si 0.698 3.302 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.188 1.188 24 H 0.106 0.894 25 H 0.089 0.911 26 H 0.114 0.886 27 H 0.233 0.767 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.271 0.729 33 H 0.195 0.805 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.560 17.838 7.655 20.192 hybrid contribution -0.220 0.504 0.440 0.705 sum 5.341 18.343 8.095 20.749 Atomic orbital electron populations 1.20606 0.86676 1.03712 1.04300 1.21478 0.94991 0.86399 0.93829 1.19632 0.93135 0.92414 1.29373 1.17247 0.84949 0.83773 0.74465 1.90721 1.16659 1.84358 1.51120 1.45617 1.09937 1.05097 1.78381 1.20953 0.94271 0.79589 1.04179 1.21488 1.00725 0.87445 1.06855 1.23153 0.83867 0.88589 0.71838 1.90790 1.18957 1.84804 1.45090 1.84519 1.42924 1.19926 1.85678 1.23744 0.96368 0.92551 0.99983 1.77145 0.98100 1.12400 1.23544 1.48907 1.02753 1.07547 1.49804 1.20160 0.95739 0.73295 1.00230 1.21087 1.48095 0.99185 0.89996 0.90020 1.24793 0.94281 0.97415 0.95877 1.69865 1.45112 1.18261 1.18674 0.86903 0.79537 0.81042 0.82688 1.19487 1.20354 1.18777 0.89408 0.91087 0.88623 0.76698 0.90506 0.90564 0.86765 0.86713 0.72860 0.80494 0.92703 0.93396 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.67 9.57 36.01 0.34 -1.32 16 2 C 0.17 3.34 7.01 -81.61 -0.57 2.77 16 3 C -0.33 -5.77 6.13 -105.07 -0.64 -6.41 16 4 C 0.61 9.64 7.81 -12.52 -0.10 9.54 16 5 O -0.55 -10.39 14.84 5.28 0.08 -10.32 16 6 N -0.74 -8.10 5.55 -61.38 -0.34 -8.44 16 7 C 0.13 1.34 4.96 -4.04 -0.02 1.32 16 8 C -0.13 -0.76 5.93 -27.88 -0.17 -0.92 16 9 C 0.48 3.77 8.33 36.00 0.30 4.07 16 10 O -0.51 -5.95 16.74 -18.75 -0.31 -6.26 16 11 O -0.52 -2.82 13.42 -39.27 -0.53 -3.34 16 12 C 0.06 0.99 11.50 -16.98 -0.20 0.80 16 13 N -0.29 -6.01 12.50 30.86 0.39 -5.63 16 14 N -0.31 -6.82 3.56 -57.77 -0.21 -7.02 16 15 C 0.22 5.17 5.03 -5.19 -0.03 5.15 16 16 C -0.55 -14.85 9.94 -34.44 -0.34 -15.19 16 17 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 18 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 19 N -0.88 -25.75 13.96 55.43 0.77 -24.98 16 20 Si 0.87 19.64 27.47 -169.99 -4.67 14.97 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 24 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 25 H 0.07 1.16 7.05 -51.93 -0.37 0.80 16 26 H 0.10 1.60 6.50 -51.93 -0.34 1.26 16 27 H 0.40 3.11 7.43 -40.82 -0.30 2.81 16 28 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 29 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 30 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.41 0.68 9.10 45.56 0.41 1.09 16 33 H 0.18 1.93 7.50 -52.49 -0.39 1.54 16 34 H 0.06 1.27 7.20 -51.93 -0.37 0.89 16 35 H 0.05 1.02 6.44 -51.93 -0.33 0.68 16 36 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 318.69 15.07 4.80 4.80 Total: -1.00 -35.68 318.69 -4.93 -40.61 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -3.39 Total: 3.70 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -1.52 Total: 1.91 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.61 Total: -46.07 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.76 Total: -19.92 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.67 Total: 14.97 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.68 -4.93 -40.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594256882.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.267 kcal (2) G-P(sol) polarization free energy of solvation -35.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds