Wall clock time and date at job start Tue Mar 31 2020 05:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38036 * 126.29302 * 2 1 4 4 C 1.47436 * 126.41450 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00091 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99867 * 179.72839 * 4 3 2 7 7 C 1.46506 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47041 * 179.97438 * 7 6 4 9 9 C 1.50696 * 109.46779 * 179.97438 * 8 7 6 10 10 O 1.20828 * 120.00167 * 0.02562 * 9 8 7 11 11 O 1.34235 * 119.99813 * 179.97438 * 9 8 7 12 12 C 1.41286 * 107.17192 * 180.24871 * 3 2 1 13 13 N 1.30448 * 108.02337 * 359.61207 * 12 3 2 14 14 N 1.34259 * 126.28729 * 180.02562 * 2 1 3 15 15 C 1.46503 * 125.75762 * 359.97438 * 14 2 1 16 16 C 1.50696 * 109.46974 * 90.00112 * 15 14 2 17 17 H 1.08001 * 120.00163 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99873 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99784 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99944 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47036 * 89.99828 * 20 18 16 22 22 H 1.48501 * 109.47338 * 209.99683 * 20 18 16 23 23 H 1.48499 * 109.47125 * 329.99973 * 20 18 16 24 24 H 1.09000 * 109.47568 * 89.97502 * 1 2 3 25 25 H 1.09002 * 109.47528 * 209.97528 * 1 2 3 26 26 H 1.08998 * 109.46953 * 329.97793 * 1 2 3 27 27 H 0.97004 * 120.00018 * 359.97438 * 6 4 3 28 28 H 1.09004 * 109.46587 * 299.99661 * 7 6 4 29 29 H 1.08993 * 109.47306 * 59.99553 * 7 6 4 30 30 H 1.08999 * 109.46737 * 299.99175 * 8 7 6 31 31 H 1.08993 * 109.47411 * 59.99647 * 8 7 6 32 32 H 0.96704 * 117.00008 * 179.97438 * 11 9 8 33 33 H 1.08000 * 125.99145 * 179.77305 * 12 3 2 34 34 H 1.09004 * 109.46911 * 210.00324 * 15 14 2 35 35 H 1.09002 * 109.46643 * 329.99944 * 15 14 2 36 36 H 0.97003 * 119.99565 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.7999 3.5106 0.0051 7 6 2.3644 4.9095 0.0051 8 6 3.5902 5.8251 0.0127 9 6 3.1422 7.2640 0.0121 10 8 1.9635 7.5298 0.0067 11 8 4.0526 8.2504 0.0186 12 6 3.6589 0.6498 -0.0059 13 7 3.6340 -0.6545 -0.0007 14 7 2.3016 -1.0822 -0.0005 15 6 1.8500 -2.4759 -0.0006 16 6 1.6946 -2.9535 -1.4214 17 1 1.9103 -2.2855 -2.2423 18 6 1.2772 -4.2431 -1.6734 19 7 1.1411 -4.6597 -2.9134 20 14 0.9035 -5.3981 -0.2537 21 1 -0.5276 -5.2730 0.1227 22 1 1.1865 -6.7965 -0.6655 23 1 1.7543 -5.0430 0.9105 24 1 -0.3634 0.0004 -1.0276 25 1 -0.3634 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 3.7462 3.2972 0.0098 28 1 1.7699 5.1049 -0.8874 29 1 1.7618 5.1023 0.8925 30 1 4.1842 5.6296 0.9054 31 1 4.1932 5.6324 -0.8745 32 1 3.7173 9.1574 0.0175 33 1 4.5448 1.2675 -0.0108 34 1 2.5848 -3.0960 0.5130 35 1 0.8915 -2.5472 0.5136 36 1 0.8471 -5.5669 -3.0907 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594256882.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:03 Heat of formation + Delta-G solvation = -92.796813 kcal Electronic energy + Delta-G solvation = -21034.876988 eV Core-core repulsion = 17519.238279 eV Total energy + Delta-G solvation = -3515.638708 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.33123 -41.26652 -40.07662 -37.19689 -36.21046 -35.74377 -34.01600 -32.89150 -32.15411 -29.63268 -28.27844 -25.95251 -24.76054 -23.28091 -22.07098 -21.28729 -20.46652 -19.28175 -19.06358 -18.51852 -17.51578 -17.32883 -16.83595 -16.53017 -16.30513 -16.11921 -15.65503 -15.33247 -14.76363 -14.54369 -14.33852 -14.17566 -14.08467 -13.76452 -13.69551 -13.13521 -13.01437 -12.90017 -12.61294 -12.55887 -12.45948 -12.14656 -11.84822 -11.75461 -11.66037 -10.91732 -10.85024 -10.25770 -10.14395 -9.43277 -8.42902 -6.54879 0.65608 1.23468 1.33534 1.34567 1.35817 1.45642 1.59532 1.90802 2.24962 2.54300 2.67225 2.89764 3.59072 3.72184 3.77984 4.07781 4.11832 4.20932 4.39037 4.40709 4.56203 4.62225 4.69524 4.72929 4.83317 4.95150 5.05939 5.15240 5.18296 5.46376 5.65815 5.66284 5.83571 6.20950 6.48203 6.62800 6.82145 7.01042 7.09074 7.36722 8.73602 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.044568 B = 0.002969 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.097891 B = 9428.150471 C = 9624.960233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.146 3.854 3 C -0.330 4.330 4 C 0.604 3.396 5 O -0.585 6.585 6 N -0.711 5.711 7 C 0.135 3.865 8 C -0.116 4.116 9 C 0.489 3.511 10 O -0.558 6.558 11 O -0.510 6.510 12 C 0.084 3.916 13 N -0.334 5.334 14 N -0.339 5.339 15 C 0.233 3.767 16 C -0.553 4.553 17 H 0.026 0.974 18 C 0.023 3.977 19 N -0.936 5.936 20 Si 0.949 3.051 21 H -0.253 1.253 22 H -0.278 1.278 23 H -0.241 1.241 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.419 0.581 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.429 0.571 33 H 0.234 0.766 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.608 20.426 9.788 23.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.011 3.989 3 C -0.345 4.345 4 C 0.393 3.607 5 O -0.467 6.467 6 N -0.365 5.365 7 C 0.011 3.989 8 C -0.153 4.153 9 C 0.333 3.667 10 O -0.449 6.449 11 O -0.324 6.324 12 C -0.103 4.103 13 N -0.153 5.153 14 N -0.116 5.116 15 C 0.113 3.887 16 C -0.591 4.591 17 H 0.045 0.955 18 C -0.178 4.178 19 N -0.574 5.574 20 Si 0.770 3.230 21 H -0.177 1.177 22 H -0.203 1.203 23 H -0.164 1.164 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.121 0.879 27 H 0.256 0.744 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.163 0.837 31 H 0.160 0.840 32 H 0.291 0.709 33 H 0.250 0.750 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.266 18.924 9.675 22.462 hybrid contribution -0.637 0.415 -0.278 0.810 sum 6.629 19.339 9.397 22.499 Atomic orbital electron populations 1.20590 0.85947 1.04504 1.03762 1.21971 0.95934 0.86855 0.94187 1.19925 0.93517 0.92825 1.28220 1.17144 0.85022 0.83969 0.74554 1.90709 1.18331 1.84742 1.52878 1.45347 1.10269 1.04700 1.76141 1.20917 0.96110 0.79419 1.02459 1.21445 0.98952 0.85288 1.09658 1.23433 0.83248 0.89578 0.70430 1.90789 1.20983 1.85560 1.47562 1.84481 1.42153 1.20865 1.84894 1.24600 0.97630 0.91542 0.96518 1.77093 0.97859 1.14613 1.25721 1.48757 1.03587 1.07238 1.52004 1.19888 0.96806 0.74614 0.97343 1.21194 1.48115 0.98809 0.90991 0.95550 1.25825 0.93641 0.99261 0.99035 1.70028 1.46649 1.19094 1.21592 0.85701 0.80420 0.77808 0.79078 1.17748 1.20272 1.16447 0.90553 0.90119 0.87936 0.74358 0.92627 0.92163 0.83654 0.83988 0.70933 0.74976 0.92450 0.91250 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.20 9.57 71.24 0.68 -2.52 16 2 C 0.15 5.74 7.01 42.14 0.30 6.04 16 3 C -0.33 -11.07 6.13 -20.15 -0.12 -11.20 16 4 C 0.60 18.39 7.81 86.67 0.68 19.06 16 5 O -0.59 -22.04 14.84 -4.04 -0.06 -22.10 16 6 N -0.71 -13.67 5.55 -466.36 -2.59 -16.26 16 7 C 0.13 2.45 4.96 86.38 0.43 2.88 16 8 C -0.12 -0.98 5.93 29.85 0.18 -0.80 16 9 C 0.49 6.56 8.33 71.23 0.59 7.15 16 10 O -0.56 -12.73 16.74 21.96 0.37 -12.36 16 11 O -0.51 -4.10 13.42 -51.47 -0.69 -4.79 16 12 C 0.08 2.53 11.50 85.65 0.99 3.52 16 13 N -0.33 -13.40 12.50 -56.28 -0.70 -14.10 16 14 N -0.34 -14.74 3.56 -336.70 -1.20 -15.94 16 15 C 0.23 10.72 5.03 85.63 0.43 11.16 16 16 C -0.55 -31.08 9.94 25.60 0.25 -30.83 16 17 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 18 C 0.02 1.25 5.47 84.65 0.46 1.71 16 19 N -0.94 -56.37 13.96 21.45 0.30 -56.07 16 20 Si 0.95 40.12 27.47 68.60 1.88 42.00 16 21 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 22 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.24 -9.28 6.54 99.48 0.65 -8.63 16 24 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 25 H 0.08 2.63 7.05 -2.39 -0.02 2.61 16 26 H 0.10 3.46 6.50 -2.39 -0.02 3.45 16 27 H 0.42 4.66 7.43 -92.71 -0.69 3.97 16 28 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 29 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 30 H 0.15 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.43 0.42 9.10 -74.05 -0.67 -0.26 16 33 H 0.23 3.91 7.50 -2.91 -0.02 3.89 16 34 H 0.06 2.59 7.20 -2.38 -0.02 2.57 16 35 H 0.07 2.86 6.44 -2.39 -0.02 2.85 16 36 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -82.71 318.69 1.90 -80.81 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -0.28 Total: 12.64 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 4.86 Total: 6.17 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -4.19 Total: -102.37 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -0.38 Total: -39.25 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 1.88 Total: 42.00 kcal Total: -82.71 1.90 -80.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594256882.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.989 kcal (2) G-P(sol) polarization free energy of solvation -82.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds