Wall clock time and date at job start Tue Mar 31 2020 05:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99756 * 2 1 4 4 H 1.48497 * 109.47220 * 270.00436 * 3 2 1 5 5 H 1.48496 * 109.46875 * 30.00699 * 3 2 1 6 6 H 1.48497 * 109.46859 * 150.00418 * 3 2 1 7 7 C 1.37873 * 120.00451 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99504 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00380 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47092 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46951 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47241 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47383 * 180.02562 * 12 11 10 14 14 O 1.21284 * 119.99638 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00015 * 180.02562 * 13 12 11 16 16 C 1.39761 * 119.99887 * 179.97438 * 15 13 12 17 17 N 1.30910 * 126.08059 * 0.04322 * 16 15 13 18 18 N 1.39908 * 108.88561 * 179.97438 * 17 16 15 19 19 H 0.97003 * 125.66918 * 180.02562 * 18 17 16 20 20 C 1.34142 * 108.66749 * 359.72514 * 18 17 16 21 21 C 1.38182 * 107.53303 * 0.43141 * 20 18 17 22 22 C 1.47082 * 126.46624 * 179.83947 * 21 20 18 23 23 O 1.21549 * 120.00448 * 179.68832 * 22 21 20 24 24 O 1.34778 * 119.99994 * 359.68669 * 22 21 20 25 25 H 0.96999 * 119.99896 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.46987 * 59.99303 * 9 7 2 27 27 H 1.09001 * 109.46665 * 299.99610 * 9 7 2 28 28 H 1.09001 * 109.47497 * 60.00146 * 10 9 7 29 29 H 1.09001 * 109.47174 * 299.99454 * 10 9 7 30 30 H 1.09002 * 109.47266 * 60.00025 * 11 10 9 31 31 H 1.09001 * 109.46865 * 299.99801 * 11 10 9 32 32 H 1.09002 * 109.46966 * 59.99846 * 12 11 10 33 33 H 1.09003 * 109.46653 * 300.00080 * 12 11 10 34 34 H 0.97001 * 120.00418 * 359.97438 * 15 13 12 35 35 H 1.08000 * 126.23404 * 180.27142 * 20 18 17 36 36 H 0.96700 * 117.00264 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5517 -2.6363 -0.0022 12 6 6.0618 -4.0788 -0.0015 13 6 7.5687 -4.0788 -0.0020 14 8 8.1751 -3.0284 -0.0035 15 7 8.2426 -5.2459 -0.0020 16 6 9.6402 -5.2459 -0.0031 17 7 10.4112 -4.1879 -0.0034 18 7 11.7477 -4.6014 -0.0040 19 1 12.5210 -4.0158 -0.0039 20 6 11.7822 -5.9424 0.0021 21 6 10.4758 -6.3925 -0.0034 22 6 10.0345 -7.7955 -0.0032 23 8 8.8481 -8.0596 -0.0027 24 8 10.9458 -8.7886 -0.0035 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6802 0.8887 27 1 3.8745 -0.6799 -0.8912 28 1 3.6580 -3.1505 -0.8907 29 1 3.6587 -3.1500 0.8893 30 1 5.9157 -2.1222 0.8873 31 1 5.9142 -2.1228 -0.8927 32 1 5.6977 -4.5934 -0.8907 33 1 5.6991 -4.5919 0.8893 34 1 7.7577 -6.0860 -0.0013 35 1 12.6695 -6.5581 0.0074 36 1 10.6079 -9.6946 -0.0037 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594609087.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:00 Heat of formation + Delta-G solvation = -67.492266 kcal Electronic energy + Delta-G solvation = -20714.870751 eV Core-core repulsion = 17200.329330 eV Total energy + Delta-G solvation = -3514.541421 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.00431 -40.00871 -39.67250 -36.44503 -35.30699 -34.81065 -32.58978 -31.32748 -31.02332 -29.91116 -26.15285 -24.49166 -23.43669 -21.79925 -20.86649 -20.00554 -19.93744 -18.72255 -18.19835 -16.84085 -16.70161 -16.46929 -16.39581 -16.31327 -15.76551 -14.98083 -14.24425 -14.07923 -14.05477 -13.93187 -13.43769 -12.63209 -12.51821 -12.09075 -11.95237 -11.73711 -11.43432 -11.41249 -11.08215 -10.97226 -10.71598 -10.51612 -10.00571 -9.80356 -9.61545 -9.50530 -9.43304 -9.08835 -8.92207 -8.46364 -5.97542 -3.94862 0.84664 1.60218 2.01218 2.51666 2.58811 3.00053 3.08886 3.37872 3.44685 3.51041 4.02922 4.33663 4.52927 4.73627 4.81775 5.11312 5.20578 5.29858 5.36218 5.37445 5.78036 6.04995 6.09597 6.16068 6.29746 6.44003 6.52458 6.70790 6.78352 6.85701 7.02617 7.41675 7.44675 7.54367 7.55891 7.87871 8.06091 8.61574 9.07746 9.65901 11.15983 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.035966 B = 0.002712 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.335012 B =10322.418815 C =11069.701409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.103 4.103 11 C -0.107 4.107 12 C -0.135 4.135 13 C 0.505 3.495 14 O -0.486 6.486 15 N -0.639 5.639 16 C 0.363 3.637 17 N -0.277 5.277 18 N -0.450 5.450 19 H 0.450 0.550 20 C 0.154 3.846 21 C -0.309 4.309 22 C 0.565 3.435 23 O -0.528 6.528 24 O -0.516 6.516 25 H 0.262 0.738 26 H 0.016 0.984 27 H 0.011 0.989 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.430 0.570 35 H 0.199 0.801 36 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.470 -18.365 0.038 33.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.145 4.145 12 C -0.175 4.175 13 C 0.292 3.708 14 O -0.355 6.355 15 N -0.293 5.293 16 C 0.103 3.897 17 N -0.108 5.108 18 N -0.154 5.154 19 H 0.296 0.704 20 C -0.002 4.002 21 C -0.325 4.325 22 C 0.411 3.589 23 O -0.418 6.418 24 O -0.328 6.328 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.271 0.729 35 H 0.215 0.785 36 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 28.472 -15.829 0.037 32.577 hybrid contribution 0.357 -0.821 -0.021 0.896 sum 28.829 -16.651 0.016 33.292 Atomic orbital electron populations 1.69923 1.06303 1.26795 1.51558 1.25043 0.94730 0.99215 0.94646 0.86773 0.80441 0.83566 0.78520 1.20335 1.21491 1.18887 1.21189 0.89672 0.94396 1.50407 0.91069 1.19576 0.96907 0.92484 0.96334 1.21479 0.91475 0.99975 1.01101 1.21521 0.97422 0.92472 1.03079 1.21800 0.88487 1.02235 1.04936 1.21544 0.91358 0.82646 0.75203 1.90796 1.69892 1.30410 1.44362 1.43530 1.01020 1.11986 1.72810 1.19210 0.85850 0.89725 0.94876 1.78103 0.85366 1.17582 1.29752 1.46171 1.08106 1.05447 1.55699 0.70360 1.23268 0.98625 0.85588 0.92761 1.18958 0.92458 0.90197 1.30851 1.19520 0.83154 0.84733 0.71540 1.90853 1.18137 1.84496 1.48298 1.84520 1.42313 1.19695 1.86274 0.92840 0.96600 0.97037 0.92729 0.92695 0.91629 0.91627 0.88316 0.88324 0.72877 0.78466 0.72576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.69 13.96 55.43 0.77 -27.91 16 2 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.61 27.47 -169.99 -4.67 17.94 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 7 C -0.52 -15.25 9.66 -34.44 -0.33 -15.58 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.02 -0.39 4.04 -27.89 -0.11 -0.50 16 10 C -0.10 -2.05 5.15 -26.73 -0.14 -2.18 16 11 C -0.11 -1.83 4.50 -26.73 -0.12 -1.95 16 12 C -0.13 -1.78 5.70 -27.88 -0.16 -1.93 16 13 C 0.51 7.40 7.79 -10.99 -0.09 7.32 16 14 O -0.49 -8.94 14.70 5.55 0.08 -8.86 16 15 N -0.64 -7.99 5.42 -10.92 -0.06 -8.05 16 16 C 0.36 4.51 7.79 -154.47 -1.20 3.31 16 17 N -0.28 -3.59 10.86 31.61 0.34 -3.25 16 18 N -0.45 -3.14 7.27 30.85 0.22 -2.92 16 19 H 0.45 1.44 8.96 -182.74 -1.64 -0.20 16 20 C 0.15 0.84 11.85 -16.56 -0.20 0.64 16 21 C -0.31 -2.82 6.14 -104.94 -0.64 -3.47 16 22 C 0.57 4.86 8.32 34.32 0.29 5.14 16 23 O -0.53 -5.87 15.99 -19.30 -0.31 -6.18 16 24 O -0.52 -2.54 13.26 -40.70 -0.54 -3.08 16 25 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 26 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 27 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 31 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.43 4.61 6.95 -40.82 -0.28 4.33 16 35 H 0.20 0.15 8.06 -52.49 -0.42 -0.28 16 36 H 0.42 0.38 9.11 45.56 0.42 0.79 16 LS Contribution 319.01 15.07 4.81 4.81 Total: -1.00 -39.70 319.01 -6.96 -46.66 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -4.81 Total: -1.81 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -2.80 Total: -7.36 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 1.28 Total: -42.12 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.77 Total: -18.12 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.67 Total: 17.94 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -39.70 -6.96 -46.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609087.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.830 kcal (2) G-P(sol) polarization free energy of solvation -39.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds