Wall clock time and date at job start Tue Mar 31 2020 05:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99991 * 2 1 4 4 H 1.48494 * 109.46959 * 269.99871 * 3 2 1 5 5 H 1.48499 * 109.47023 * 30.00138 * 3 2 1 6 6 H 1.48501 * 109.47092 * 150.00086 * 3 2 1 7 7 C 1.37876 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00035 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47267 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47218 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47188 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46871 * 179.97438 * 12 11 10 14 14 O 1.21295 * 120.00445 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99577 * 179.97438 * 13 12 11 16 16 C 1.40327 * 119.99804 * 180.02562 * 15 13 12 17 17 C 1.35942 * 127.29553 * 359.97438 * 16 15 13 18 18 N 1.35776 * 107.07384 * 180.26134 * 17 16 15 19 19 H 0.97002 * 124.89027 * 179.74897 * 18 17 16 20 20 N 1.28450 * 110.22634 * 359.60603 * 18 17 16 21 21 C 1.31956 * 110.24628 * 0.39958 * 20 18 17 22 22 C 1.47377 * 126.47467 * 179.75626 * 21 20 18 23 23 O 1.21518 * 119.99587 * 180.02562 * 22 21 20 24 24 O 1.34750 * 120.00409 * 359.97438 * 22 21 20 25 25 H 0.96996 * 120.00181 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47019 * 59.99710 * 9 7 2 27 27 H 1.09004 * 109.47197 * 300.00077 * 9 7 2 28 28 H 1.08997 * 109.47275 * 59.99765 * 10 9 7 29 29 H 1.09004 * 109.47293 * 300.00286 * 10 9 7 30 30 H 1.08994 * 109.47591 * 60.00065 * 11 10 9 31 31 H 1.09000 * 109.47254 * 299.99750 * 11 10 9 32 32 H 1.08994 * 109.47128 * 59.99382 * 12 11 10 33 33 H 1.08995 * 109.46616 * 299.99338 * 12 11 10 34 34 H 0.97005 * 120.00467 * 359.97438 * 15 13 12 35 35 H 1.08002 * 126.45979 * 359.97438 * 17 16 15 36 36 H 0.96696 * 117.00144 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4803 -4.9871 -0.0046 12 6 2.4746 -6.1500 -0.0050 13 6 1.7210 -7.4551 -0.0061 14 8 0.5081 -7.4552 -0.0071 15 7 2.3949 -8.6223 -0.0072 16 6 1.6933 -9.8376 -0.0088 17 6 0.3449 -10.0102 -0.0090 18 7 0.1143 -11.3482 -0.0049 19 1 -0.7640 -11.7599 -0.0006 20 7 1.2266 -11.9906 -0.0105 21 6 2.2412 -11.1468 -0.0099 22 6 3.6726 -11.4978 -0.0101 23 8 4.5132 -10.6204 -0.0090 24 8 4.0491 -12.7916 -0.0106 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5563 -0.8920 27 1 0.6240 -2.5575 0.8880 28 1 2.8719 -3.6051 0.8872 29 1 2.8720 -3.6035 -0.8927 30 1 0.8540 -5.0438 -0.8948 31 1 0.8534 -5.0459 0.8851 32 1 3.1006 -6.0931 0.8854 33 1 3.1017 -6.0914 -0.8945 34 1 3.3650 -8.6223 -0.0076 35 1 -0.4020 -9.2301 -0.0076 36 1 4.9990 -12.9724 -0.0103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594609169.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:58 Heat of formation + Delta-G solvation = -74.160187 kcal Electronic energy + Delta-G solvation = -20687.849003 eV Core-core repulsion = 17173.018439 eV Total energy + Delta-G solvation = -3514.830564 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.10461 -40.21339 -39.88840 -36.52668 -35.29033 -34.79548 -32.67767 -32.03209 -30.63141 -29.26290 -25.81552 -25.45965 -23.34232 -21.92051 -21.03415 -20.03354 -19.99955 -19.09846 -18.34384 -17.11472 -16.58860 -16.51370 -16.26762 -16.07441 -15.78730 -15.27858 -14.46680 -14.10250 -14.06474 -13.84963 -13.46159 -12.64512 -12.39056 -11.98470 -11.74220 -11.68352 -11.44820 -11.36505 -11.28028 -10.98961 -10.56313 -10.50923 -10.42904 -10.00403 -9.90905 -9.61745 -9.24643 -8.99443 -8.41497 -8.30468 -5.95443 -3.97785 0.85284 1.60682 2.20878 2.47273 2.55210 2.91968 3.13574 3.34407 3.40485 3.43808 4.06372 4.49149 4.56399 4.75073 4.99318 5.19769 5.31863 5.35843 5.40174 5.45033 5.81349 6.00392 6.10982 6.25513 6.28722 6.52327 6.57696 6.81826 6.99051 7.14457 7.20297 7.34016 7.55680 7.73889 7.89454 7.99675 8.05975 8.47888 9.09954 9.65985 11.15923 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038857 B = 0.002533 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.426031 B =11051.452223 C =11740.827944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.111 4.111 11 C -0.103 4.103 12 C -0.136 4.136 13 C 0.514 3.486 14 O -0.522 6.522 15 N -0.643 5.643 16 C 0.097 3.903 17 C -0.030 4.030 18 N -0.366 5.366 19 H 0.455 0.545 20 N -0.216 5.216 21 C -0.034 4.034 22 C 0.580 3.420 23 O -0.513 6.513 24 O -0.499 6.499 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.424 0.576 35 H 0.214 0.786 36 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.381 -26.770 -0.005 27.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.149 4.149 11 C -0.141 4.141 12 C -0.175 4.175 13 C 0.304 3.696 14 O -0.397 6.397 15 N -0.290 5.290 16 C -0.008 4.008 17 C -0.176 4.176 18 N -0.085 5.085 19 H 0.301 0.699 20 N -0.056 5.056 21 C -0.193 4.193 22 C 0.422 3.578 23 O -0.399 6.399 24 O -0.310 6.310 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.262 0.738 35 H 0.230 0.770 36 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 3.045 -27.334 -0.001 27.503 hybrid contribution 1.270 1.381 -0.012 1.876 sum 4.314 -25.953 -0.013 26.309 Atomic orbital electron populations 1.69969 1.06054 1.26515 1.50998 1.25038 0.94839 0.99237 0.95457 0.86611 0.79841 0.83584 0.78056 1.20708 1.21269 1.19905 1.21288 0.93012 0.91195 1.50345 0.92729 1.19095 0.94046 0.91265 0.97301 1.21656 0.99121 0.93854 1.00250 1.21479 0.96958 0.92603 1.03084 1.21809 1.00209 0.90789 1.04725 1.21395 0.88455 0.85227 0.74544 1.90569 1.14258 1.86978 1.47866 1.43319 1.11194 1.02236 1.72226 1.17601 0.91002 0.85538 1.06688 1.23439 0.97181 0.86549 1.10396 1.43363 1.07973 1.05192 1.51990 0.69904 1.73647 0.91313 1.24415 1.16229 1.20271 0.91056 0.89685 1.18273 1.19087 0.86593 0.80442 0.71678 1.90889 1.52101 1.49709 1.47247 1.84631 1.33675 1.27347 1.85330 0.93050 0.96596 0.96573 0.93347 0.93357 0.91629 0.91636 0.88491 0.88486 0.73771 0.76992 0.72477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.29 55.43 0.74 -26.65 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 11 C -0.10 -1.75 4.50 -26.73 -0.12 -1.87 16 12 C -0.14 -1.72 5.70 -27.88 -0.16 -1.88 16 13 C 0.51 6.82 7.80 -10.99 -0.09 6.73 16 14 O -0.52 -8.17 13.27 5.54 0.07 -8.09 16 15 N -0.64 -7.44 5.44 -9.69 -0.05 -7.49 16 16 C 0.10 1.13 7.00 -83.38 -0.58 0.55 16 17 C -0.03 -0.30 10.91 -16.63 -0.18 -0.49 16 18 N -0.37 -2.79 6.86 30.72 0.21 -2.58 16 19 H 0.45 1.56 8.96 -190.45 -1.71 -0.15 16 20 N -0.22 -2.16 12.23 33.45 0.41 -1.75 16 21 C -0.03 -0.38 7.17 -82.68 -0.59 -0.97 16 22 C 0.58 5.90 8.33 34.45 0.29 6.19 16 23 O -0.51 -5.91 16.15 -19.28 -0.31 -6.22 16 24 O -0.50 -3.68 13.44 -40.63 -0.55 -4.23 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 31 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 32 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.42 4.39 7.15 -40.82 -0.29 4.10 16 35 H 0.21 2.19 6.02 -52.49 -0.32 1.88 16 36 H 0.42 0.94 9.11 45.56 0.42 1.36 16 LS Contribution 319.98 15.07 4.82 4.82 Total: -1.00 -35.99 319.98 -6.62 -42.61 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -4.82 Total: 0.18 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -2.12 Total: -7.43 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 1.30 Total: -38.47 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.78 Total: -18.54 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.99 -6.62 -42.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609169.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.546 kcal (2) G-P(sol) polarization free energy of solvation -35.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds