Wall clock time and date at job start Tue Mar 31 2020 05:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99991 * 2 1 4 4 H 1.48494 * 109.46959 * 269.99871 * 3 2 1 5 5 H 1.48499 * 109.47023 * 30.00138 * 3 2 1 6 6 H 1.48501 * 109.47092 * 150.00086 * 3 2 1 7 7 C 1.37876 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00035 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47267 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47218 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47188 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46871 * 179.97438 * 12 11 10 14 14 O 1.21295 * 120.00445 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99577 * 179.97438 * 13 12 11 16 16 C 1.40327 * 119.99804 * 180.02562 * 15 13 12 17 17 C 1.35942 * 127.29553 * 359.97438 * 16 15 13 18 18 N 1.35776 * 107.07384 * 180.26134 * 17 16 15 19 19 H 0.97002 * 124.89027 * 179.74897 * 18 17 16 20 20 N 1.28450 * 110.22634 * 359.60603 * 18 17 16 21 21 C 1.31956 * 110.24628 * 0.39958 * 20 18 17 22 22 C 1.47377 * 126.47467 * 179.75626 * 21 20 18 23 23 O 1.21518 * 119.99587 * 180.02562 * 22 21 20 24 24 O 1.34750 * 120.00409 * 359.97438 * 22 21 20 25 25 H 0.96996 * 120.00181 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47019 * 59.99710 * 9 7 2 27 27 H 1.09004 * 109.47197 * 300.00077 * 9 7 2 28 28 H 1.08997 * 109.47275 * 59.99765 * 10 9 7 29 29 H 1.09004 * 109.47293 * 300.00286 * 10 9 7 30 30 H 1.08994 * 109.47591 * 60.00065 * 11 10 9 31 31 H 1.09000 * 109.47254 * 299.99750 * 11 10 9 32 32 H 1.08994 * 109.47128 * 59.99382 * 12 11 10 33 33 H 1.08995 * 109.46616 * 299.99338 * 12 11 10 34 34 H 0.97005 * 120.00467 * 359.97438 * 15 13 12 35 35 H 1.08002 * 126.45979 * 359.97438 * 17 16 15 36 36 H 0.96696 * 117.00144 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4803 -4.9871 -0.0046 12 6 2.4746 -6.1500 -0.0050 13 6 1.7210 -7.4551 -0.0061 14 8 0.5081 -7.4552 -0.0071 15 7 2.3949 -8.6223 -0.0072 16 6 1.6933 -9.8376 -0.0088 17 6 0.3449 -10.0102 -0.0090 18 7 0.1143 -11.3482 -0.0049 19 1 -0.7640 -11.7599 -0.0006 20 7 1.2266 -11.9906 -0.0105 21 6 2.2412 -11.1468 -0.0099 22 6 3.6726 -11.4978 -0.0101 23 8 4.5132 -10.6204 -0.0090 24 8 4.0491 -12.7916 -0.0106 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5563 -0.8920 27 1 0.6240 -2.5575 0.8880 28 1 2.8719 -3.6051 0.8872 29 1 2.8720 -3.6035 -0.8927 30 1 0.8540 -5.0438 -0.8948 31 1 0.8534 -5.0459 0.8851 32 1 3.1006 -6.0931 0.8854 33 1 3.1017 -6.0914 -0.8945 34 1 3.3650 -8.6223 -0.0076 35 1 -0.4020 -9.2301 -0.0076 36 1 4.9990 -12.9724 -0.0103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594609169.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:58 Heat of formation + Delta-G solvation = -101.452679 kcal Electronic energy + Delta-G solvation = -20689.032494 eV Core-core repulsion = 17173.018439 eV Total energy + Delta-G solvation = -3516.014055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.87327 -40.94405 -40.88934 -37.22512 -36.71294 -35.95970 -34.61423 -32.81513 -31.92551 -30.56671 -27.50324 -26.23345 -24.75771 -23.17669 -21.91986 -21.58942 -21.00651 -19.88702 -19.06106 -18.40218 -17.84972 -17.45692 -17.38548 -17.07443 -16.85138 -16.47102 -16.07025 -15.48670 -15.12461 -14.61602 -14.52573 -14.24780 -13.85309 -13.58276 -13.28909 -12.83044 -12.64986 -12.37808 -12.33005 -12.26589 -12.13292 -12.10747 -12.04142 -11.33650 -11.33125 -11.15823 -10.87132 -10.66094 -10.52784 -9.28031 -8.17220 -6.28669 0.08232 0.76297 1.41620 1.43429 1.54388 1.55208 1.58246 1.78106 2.06350 2.38796 2.43667 3.15734 3.27004 3.70616 3.86838 4.05084 4.18059 4.23306 4.55796 4.59198 4.70111 4.72868 4.86856 4.91855 5.22839 5.35354 5.37816 5.41234 5.47031 5.60279 5.82218 5.91338 5.94606 6.27877 6.30509 6.61115 6.90029 6.94360 7.03043 7.40795 8.94917 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038857 B = 0.002533 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.426031 B =11051.452223 C =11740.827944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.019 3.981 10 C -0.098 4.098 11 C -0.094 4.094 12 C -0.126 4.126 13 C 0.515 3.485 14 O -0.553 6.553 15 N -0.632 5.632 16 C 0.070 3.930 17 C -0.026 4.026 18 N -0.343 5.343 19 H 0.472 0.528 20 N -0.218 5.218 21 C -0.048 4.048 22 C 0.582 3.418 23 O -0.531 6.531 24 O -0.495 6.495 25 H 0.263 0.737 26 H -0.013 1.013 27 H -0.013 1.013 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.430 0.570 35 H 0.211 0.789 36 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.160 -27.593 -0.008 28.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.083 0.917 9 C -0.018 4.018 10 C -0.136 4.136 11 C -0.133 4.133 12 C -0.166 4.166 13 C 0.305 3.695 14 O -0.431 6.431 15 N -0.279 5.279 16 C -0.035 4.035 17 C -0.172 4.172 18 N -0.065 5.065 19 H 0.323 0.677 20 N -0.059 5.059 21 C -0.206 4.206 22 C 0.425 3.575 23 O -0.420 6.420 24 O -0.308 6.308 25 H 0.071 0.929 26 H 0.005 0.995 27 H 0.005 0.995 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.270 0.730 35 H 0.227 0.773 36 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges 4.852 -28.224 -0.005 28.638 hybrid contribution 0.653 1.529 -0.012 1.663 sum 5.505 -26.695 -0.016 27.256 Atomic orbital electron populations 1.70118 1.07971 1.27701 1.51992 1.26054 0.95771 1.03602 0.94876 0.85420 0.78696 0.78276 0.78489 1.19766 1.20953 1.18445 1.21773 0.93726 0.92358 1.50074 0.91736 1.19053 0.94677 0.93593 0.94478 1.21458 0.97892 0.92887 1.01317 1.21254 0.97334 0.93000 1.01669 1.21681 0.99168 0.88594 1.07117 1.21393 0.88039 0.85793 0.74247 1.90566 1.15493 1.87412 1.49590 1.43119 1.11412 1.01895 1.71498 1.17858 0.91728 0.85773 1.08127 1.23405 0.96775 0.87349 1.09682 1.43426 1.08452 1.04376 1.50285 0.67736 1.73624 0.91680 1.24397 1.16154 1.20441 0.91848 0.89520 1.18764 1.18994 0.86168 0.80981 0.71327 1.90874 1.52442 1.50372 1.48285 1.84585 1.35862 1.25717 1.84635 0.92873 0.99507 0.99483 0.92168 0.92161 0.93152 0.93160 0.86083 0.86073 0.73040 0.77284 0.69946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.50 13.29 21.45 0.28 -58.22 16 2 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 3 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.54 -31.16 9.11 25.60 0.23 -30.93 16 8 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.02 1.03 4.97 29.85 0.15 1.18 16 10 C -0.10 -3.89 5.15 30.59 0.16 -3.73 16 11 C -0.09 -3.19 4.50 30.60 0.14 -3.05 16 12 C -0.13 -2.97 5.70 29.85 0.17 -2.80 16 13 C 0.52 13.18 7.80 87.66 0.68 13.86 16 14 O -0.55 -17.32 13.27 -3.08 -0.04 -17.36 16 15 N -0.63 -13.91 5.44 -302.94 -1.65 -15.56 16 16 C 0.07 1.57 7.00 38.16 0.27 1.84 16 17 C -0.03 -0.50 10.91 83.55 0.91 0.41 16 18 N -0.34 -4.74 6.86 -56.72 -0.39 -5.13 16 19 H 0.47 2.44 8.96 -220.00 -1.97 0.46 16 20 N -0.22 -4.02 12.23 -48.07 -0.59 -4.61 16 21 C -0.05 -1.00 7.17 42.45 0.30 -0.69 16 22 C 0.58 11.03 8.33 70.23 0.59 11.62 16 23 O -0.53 -11.54 16.15 19.78 0.32 -11.22 16 24 O -0.49 -6.36 13.44 -56.61 -0.76 -7.12 16 25 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 26 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 27 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 28 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 31 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 32 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.43 8.26 7.15 -92.70 -0.66 7.60 16 35 H 0.21 4.28 6.02 -2.91 -0.02 4.26 16 36 H 0.44 1.05 9.11 -74.06 -0.67 0.37 16 Total: -1.00 -78.26 319.98 1.11 -77.15 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -2.15 Total: 7.56 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 4.06 Total: -12.17 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -2.34 Total: -83.52 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.48 Total: -35.71 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -78.26 1.11 -77.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609169.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.301 kcal (2) G-P(sol) polarization free energy of solvation -78.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds