Wall clock time and date at job start Tue Mar 31 2020 05:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35241 * 107.86079 * 179.87198 * 11 10 9 13 13 C 1.40409 * 107.86602 * 0.39163 * 12 11 10 14 14 N 1.40159 * 125.97033 * 179.73843 * 13 12 11 15 15 C 1.34777 * 119.99983 * 0.02562 * 14 13 12 16 16 O 1.21290 * 120.00252 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99736 * 179.97438 * 15 14 13 18 18 C 1.52996 * 109.47220 * 179.97438 * 17 15 14 19 19 C 1.53000 * 109.47389 * 180.02562 * 18 17 15 20 20 C 1.50701 * 109.47052 * 180.02562 * 19 18 17 21 21 O 1.20826 * 120.00362 * 359.97438 * 20 19 18 22 22 O 1.34234 * 119.99737 * 180.02562 * 20 19 18 23 23 N 1.31219 * 108.05249 * 359.75456 * 13 12 11 24 24 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 26 26 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 27 27 H 1.08003 * 126.06884 * 359.97438 * 11 10 9 28 28 H 1.08002 * 126.06490 * 180.12781 * 12 11 10 29 29 H 0.97003 * 119.99851 * 179.97438 * 14 13 12 30 30 H 1.09001 * 109.47309 * 299.99796 * 17 15 14 31 31 H 1.09006 * 109.47462 * 59.99731 * 17 15 14 32 32 H 1.09002 * 109.47236 * 299.99736 * 18 17 15 33 33 H 1.09003 * 109.47491 * 59.99825 * 18 17 15 34 34 H 1.09001 * 109.47071 * 299.99836 * 19 18 17 35 35 H 1.08996 * 109.47673 * 59.99751 * 19 18 17 36 36 H 0.96706 * 116.99434 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2631 -5.4436 0.5306 13 6 3.8671 -4.9129 -0.6205 14 7 4.9610 -5.4617 -1.3037 15 6 5.5273 -6.6026 -0.8631 16 8 5.0907 -7.1542 0.1250 17 6 6.7030 -7.1928 -1.5980 18 6 7.1515 -8.4760 -0.8957 19 6 8.3456 -9.0750 -1.6415 20 6 8.7869 -10.3392 -0.9501 21 8 8.2063 -10.7216 0.0381 22 8 9.8257 -11.0399 -1.4315 23 7 3.2287 -3.8133 -0.9445 24 1 -0.4850 -0.8400 0.0004 25 1 0.6281 -2.5591 0.8866 26 1 0.6207 -2.5548 -0.8933 27 1 1.5913 -4.7503 1.7305 28 1 3.5589 -6.3457 1.0455 29 1 5.3099 -5.0207 -2.0941 30 1 6.4128 -7.4219 -2.6234 31 1 7.5245 -6.4764 -1.6044 32 1 7.4419 -8.2466 0.1295 33 1 6.3302 -9.1926 -0.8890 34 1 8.0556 -9.3044 -2.6669 35 1 9.1668 -8.3583 -1.6479 36 1 10.0716 -11.8442 -0.9542 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594609947.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:02 Heat of formation + Delta-G solvation = -62.073833 kcal Electronic energy + Delta-G solvation = -20565.354924 eV Core-core repulsion = 17051.048464 eV Total energy + Delta-G solvation = -3514.306460 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.81208 -40.56941 -39.37677 -36.60825 -35.04969 -34.58178 -33.67369 -31.04701 -29.46011 -29.27642 -26.29928 -24.29528 -22.96761 -21.63857 -20.92810 -20.30843 -19.60195 -18.41122 -17.32022 -17.19897 -16.78793 -16.58836 -16.43210 -15.76389 -15.13937 -14.52111 -14.16721 -13.92059 -13.79477 -13.43863 -13.21686 -12.68575 -12.55178 -12.42249 -12.16781 -11.88767 -11.87072 -11.81062 -11.17080 -11.15663 -10.95315 -10.82049 -10.46908 -10.18929 -10.07144 -9.63469 -9.01509 -8.59225 -8.22129 -7.54072 -6.59504 -4.33581 1.84548 2.26536 2.52059 2.81025 2.86210 3.35709 3.39639 3.56168 3.64299 3.77329 4.30689 4.39647 4.55286 4.56863 4.72910 4.96816 5.05925 5.14245 5.20308 5.24044 5.48329 5.70352 5.72243 5.97185 6.14229 6.18658 6.40099 6.50013 6.58787 6.73685 7.33517 7.46148 7.51326 7.69215 7.81878 8.20421 8.33208 8.52875 8.60861 9.34700 10.78097 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042047 B = 0.002548 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.764019 B =10987.098780 C =11398.781107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.022 3.978 3 Si 1.080 2.920 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.607 4.607 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.318 5.318 11 C 0.050 3.950 12 C -0.285 4.285 13 C 0.257 3.743 14 N -0.632 5.632 15 C 0.517 3.483 16 O -0.515 6.515 17 C -0.135 4.135 18 C -0.097 4.097 19 C -0.114 4.114 20 C 0.476 3.524 21 O -0.510 6.510 22 O -0.521 6.521 23 N -0.302 5.302 24 H 0.267 0.733 25 H 0.046 0.954 26 H 0.035 0.965 27 H 0.168 0.832 28 H 0.161 0.839 29 H 0.411 0.589 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.820 -17.602 -5.169 24.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.183 4.183 3 Si 0.907 3.093 4 H -0.212 1.212 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.646 4.646 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.099 5.099 11 C -0.100 4.100 12 C -0.316 4.316 13 C 0.004 3.996 14 N -0.280 5.280 15 C 0.303 3.697 16 O -0.389 6.389 17 C -0.175 4.175 18 C -0.135 4.135 19 C -0.151 4.151 20 C 0.318 3.682 21 O -0.397 6.397 22 O -0.334 6.334 23 N -0.133 5.133 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.185 0.815 28 H 0.179 0.821 29 H 0.247 0.753 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 15.871 -15.048 -5.215 22.485 hybrid contribution 0.513 -2.571 0.474 2.665 sum 16.385 -17.619 -4.741 24.523 Atomic orbital electron populations 1.70822 1.06777 1.30465 1.45995 1.25936 0.96329 1.02839 0.93152 0.83378 0.74669 0.74303 0.76966 1.21202 1.21251 1.20703 1.22125 0.95393 0.90409 1.56639 0.91817 1.19767 0.86325 0.82846 0.97995 1.48787 1.23389 1.19521 1.18237 1.22575 1.00496 0.90174 0.96708 1.21549 1.02180 1.06312 1.01593 1.19147 0.91595 0.94182 0.94680 1.42539 1.29981 1.25144 1.30350 1.20620 0.84362 0.79660 0.85088 1.90672 1.62622 1.59928 1.25635 1.21606 0.96653 0.98501 1.00771 1.21192 0.96724 0.95703 0.99873 1.21393 1.00455 0.92198 1.01079 1.23549 0.76719 0.85417 0.82535 1.90778 1.54153 1.69017 1.25760 1.84536 1.48900 1.40876 1.59047 1.77342 1.03559 1.16299 1.16124 0.92241 0.93622 0.94755 0.81495 0.82124 0.75346 0.88167 0.88136 0.89838 0.89856 0.87373 0.87342 0.73119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.34 13.65 55.43 0.76 -25.58 16 2 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 3 Si 1.08 24.91 29.90 -169.99 -5.08 19.82 16 4 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.61 -17.09 9.24 -34.44 -0.32 -17.41 16 8 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.25 6.31 5.57 -5.19 -0.03 6.28 16 10 N -0.32 -7.46 3.67 -62.56 -0.23 -7.69 16 11 C 0.05 1.01 11.43 -17.24 -0.20 0.82 16 12 C -0.29 -5.69 9.61 -39.83 -0.38 -6.07 16 13 C 0.26 5.12 8.11 -154.39 -1.25 3.87 16 14 N -0.63 -9.21 5.45 -11.13 -0.06 -9.27 16 15 C 0.52 6.75 7.80 -10.99 -0.09 6.66 16 16 O -0.52 -8.70 13.11 5.55 0.07 -8.63 16 17 C -0.14 -0.97 5.70 -27.89 -0.16 -1.13 16 18 C -0.10 -0.79 3.79 -26.73 -0.10 -0.89 16 19 C -0.11 -0.60 5.81 -27.88 -0.16 -0.76 16 20 C 0.48 3.72 8.33 36.01 0.30 4.02 16 21 O -0.51 -6.10 16.74 -18.75 -0.31 -6.41 16 22 O -0.52 -2.89 13.42 -39.27 -0.53 -3.42 16 23 N -0.30 -6.98 12.42 31.44 0.39 -6.59 16 24 H 0.27 7.61 7.22 -40.82 -0.29 7.32 16 25 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 26 H 0.03 0.91 8.00 -51.93 -0.42 0.49 16 27 H 0.17 2.76 8.06 -52.48 -0.42 2.34 16 28 H 0.16 3.12 5.92 -52.49 -0.31 2.81 16 29 H 0.41 4.67 8.82 -40.82 -0.36 4.31 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16 33 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 34 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.41 0.77 9.10 45.56 0.41 1.19 16 LS Contribution 322.09 15.07 4.85 4.85 Total: -1.00 -37.37 322.09 -6.16 -43.53 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -3.53 Total: 3.48 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -2.48 Total: -4.09 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.86 Total: -49.14 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.77 Total: -18.47 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.08 Total: 19.82 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -37.37 -6.16 -43.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609947.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.545 kcal (2) G-P(sol) polarization free energy of solvation -37.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds