Wall clock time and date at job start Tue Mar 31 2020 05:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35241 * 107.86079 * 179.87198 * 11 10 9 13 13 C 1.40409 * 107.86602 * 0.39163 * 12 11 10 14 14 N 1.40159 * 125.97033 * 179.73843 * 13 12 11 15 15 C 1.34777 * 119.99983 * 0.02562 * 14 13 12 16 16 O 1.21290 * 120.00252 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99736 * 179.97438 * 15 14 13 18 18 C 1.52996 * 109.47220 * 179.97438 * 17 15 14 19 19 C 1.53000 * 109.47389 * 180.02562 * 18 17 15 20 20 C 1.50701 * 109.47052 * 180.02562 * 19 18 17 21 21 O 1.20826 * 120.00362 * 359.97438 * 20 19 18 22 22 O 1.34234 * 119.99737 * 180.02562 * 20 19 18 23 23 N 1.31219 * 108.05249 * 359.75456 * 13 12 11 24 24 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 26 26 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 27 27 H 1.08003 * 126.06884 * 359.97438 * 11 10 9 28 28 H 1.08002 * 126.06490 * 180.12781 * 12 11 10 29 29 H 0.97003 * 119.99851 * 179.97438 * 14 13 12 30 30 H 1.09001 * 109.47309 * 299.99796 * 17 15 14 31 31 H 1.09006 * 109.47462 * 59.99731 * 17 15 14 32 32 H 1.09002 * 109.47236 * 299.99736 * 18 17 15 33 33 H 1.09003 * 109.47491 * 59.99825 * 18 17 15 34 34 H 1.09001 * 109.47071 * 299.99836 * 19 18 17 35 35 H 1.08996 * 109.47673 * 59.99751 * 19 18 17 36 36 H 0.96706 * 116.99434 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2631 -5.4436 0.5306 13 6 3.8671 -4.9129 -0.6205 14 7 4.9610 -5.4617 -1.3037 15 6 5.5273 -6.6026 -0.8631 16 8 5.0907 -7.1542 0.1250 17 6 6.7030 -7.1928 -1.5980 18 6 7.1515 -8.4760 -0.8957 19 6 8.3456 -9.0750 -1.6415 20 6 8.7869 -10.3392 -0.9501 21 8 8.2063 -10.7216 0.0381 22 8 9.8257 -11.0399 -1.4315 23 7 3.2287 -3.8133 -0.9445 24 1 -0.4850 -0.8400 0.0004 25 1 0.6281 -2.5591 0.8866 26 1 0.6207 -2.5548 -0.8933 27 1 1.5913 -4.7503 1.7305 28 1 3.5589 -6.3457 1.0455 29 1 5.3099 -5.0207 -2.0941 30 1 6.4128 -7.4219 -2.6234 31 1 7.5245 -6.4764 -1.6044 32 1 7.4419 -8.2466 0.1295 33 1 6.3302 -9.1926 -0.8890 34 1 8.0556 -9.3044 -2.6669 35 1 9.1668 -8.3583 -1.6479 36 1 10.0716 -11.8442 -0.9542 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594609947.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:01 Heat of formation + Delta-G solvation = -89.751630 kcal Electronic energy + Delta-G solvation = -20566.555123 eV Core-core repulsion = 17051.048464 eV Total energy + Delta-G solvation = -3515.506659 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.28901 -41.22612 -40.58606 -37.16621 -36.46349 -35.51190 -35.36885 -32.75631 -31.04496 -30.09535 -28.11511 -25.49509 -24.56996 -22.79669 -22.02424 -21.37520 -20.91442 -19.24753 -18.99621 -18.38178 -17.95571 -17.39187 -17.23285 -16.84739 -16.59522 -15.99077 -15.63979 -15.19288 -15.10806 -14.87207 -14.16582 -14.03630 -13.91532 -13.71429 -13.28707 -13.12727 -12.99094 -12.60063 -12.49111 -12.45415 -11.99745 -11.97239 -11.72682 -11.67083 -11.59896 -11.00728 -10.87051 -10.69476 -9.84336 -9.21075 -8.78499 -6.56891 0.89150 1.28413 1.31531 1.42444 1.50808 1.58445 1.78573 2.14669 2.19794 2.41919 2.49616 3.00432 3.53909 3.85294 3.98623 4.06798 4.08854 4.16017 4.55581 4.59047 4.63586 4.71478 4.76339 4.77801 4.82292 4.86241 5.11463 5.13342 5.36810 5.54356 5.69943 5.83121 5.93112 6.23746 6.27225 6.40474 6.94575 7.04373 7.15619 7.19166 8.57380 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042047 B = 0.002548 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.764019 B =10987.098780 C =11398.781107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.020 4.020 3 Si 1.123 2.877 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.620 4.620 8 H 0.045 0.955 9 C 0.259 3.741 10 N -0.345 5.345 11 C 0.053 3.947 12 C -0.294 4.294 13 C 0.267 3.733 14 N -0.625 5.625 15 C 0.512 3.488 16 O -0.557 6.557 17 C -0.119 4.119 18 C -0.095 4.095 19 C -0.106 4.106 20 C 0.477 3.523 21 O -0.563 6.563 22 O -0.515 6.515 23 N -0.345 5.345 24 H 0.261 0.739 25 H 0.052 0.948 26 H 0.017 0.983 27 H 0.199 0.801 28 H 0.167 0.833 29 H 0.428 0.572 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.084 -17.749 -6.430 26.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.944 3.056 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.658 4.658 8 H 0.064 0.936 9 C 0.140 3.860 10 N -0.127 5.127 11 C -0.095 4.095 12 C -0.325 4.325 13 C 0.012 3.988 14 N -0.276 5.276 15 C 0.302 3.698 16 O -0.433 6.433 17 C -0.158 4.158 18 C -0.133 4.133 19 C -0.143 4.143 20 C 0.321 3.679 21 O -0.455 6.455 22 O -0.328 6.328 23 N -0.176 5.176 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.035 0.965 27 H 0.216 0.784 28 H 0.184 0.816 29 H 0.266 0.734 30 H 0.157 0.843 31 H 0.156 0.844 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 18.179 -15.240 -6.507 24.598 hybrid contribution -0.099 -2.722 0.865 2.858 sum 18.080 -17.962 -5.642 26.102 Atomic orbital electron populations 1.70918 1.07457 1.30184 1.47377 1.27320 0.96456 1.06161 0.92060 0.82832 0.73876 0.70868 0.78008 1.19430 1.20374 1.20028 1.22294 0.94661 0.92057 1.56827 0.93649 1.19424 0.86447 0.82850 0.97315 1.48573 1.24183 1.20133 1.19771 1.23168 1.00706 0.88955 0.96706 1.21744 1.02316 1.06475 1.01934 1.19567 0.91935 0.92915 0.94413 1.42790 1.28543 1.25605 1.30637 1.21874 0.84932 0.78404 0.84623 1.90653 1.64048 1.60830 1.27775 1.21697 0.94738 0.98101 1.01297 1.21088 0.97242 0.95810 0.99201 1.21438 0.99942 0.91357 1.01515 1.24108 0.76201 0.85877 0.81674 1.90770 1.55961 1.70522 1.28235 1.84506 1.47868 1.41567 1.58883 1.77258 1.04714 1.18290 1.17318 0.92981 0.92994 0.96508 0.78392 0.81599 0.73408 0.84290 0.84447 0.92667 0.92550 0.84217 0.84286 0.71403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.07 13.65 21.45 0.29 -53.78 16 2 C -0.02 -1.14 5.46 84.65 0.46 -0.68 16 3 Si 1.12 49.62 29.90 68.60 2.05 51.67 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.62 -35.44 9.24 25.60 0.24 -35.20 16 8 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 9 C 0.26 13.45 5.57 85.64 0.48 13.93 16 10 N -0.34 -16.43 3.67 -351.83 -1.29 -17.72 16 11 C 0.05 2.13 11.43 83.52 0.96 3.09 16 12 C -0.29 -11.68 9.61 22.11 0.21 -11.46 16 13 C 0.27 10.53 8.11 133.32 1.08 11.61 16 14 N -0.63 -17.22 5.45 -307.52 -1.68 -18.90 16 15 C 0.51 12.48 7.80 87.66 0.68 13.17 16 16 O -0.56 -18.70 13.11 -3.06 -0.04 -18.74 16 17 C -0.12 -1.26 5.70 29.85 0.17 -1.09 16 18 C -0.10 -1.38 3.79 30.59 0.12 -1.26 16 19 C -0.11 -0.74 5.81 29.85 0.17 -0.56 16 20 C 0.48 6.67 8.33 71.24 0.59 7.26 16 21 O -0.56 -13.60 16.74 21.96 0.37 -13.23 16 22 O -0.51 -4.54 13.42 -51.45 -0.69 -5.23 16 23 N -0.34 -16.08 12.42 -54.45 -0.68 -16.76 16 24 H 0.26 15.13 7.22 -92.71 -0.67 14.46 16 25 H 0.05 2.60 7.94 -2.39 -0.02 2.58 16 26 H 0.02 0.93 8.00 -2.39 -0.02 0.91 16 27 H 0.20 6.38 8.06 -2.91 -0.02 6.36 16 28 H 0.17 6.45 5.92 -2.91 -0.02 6.43 16 29 H 0.43 8.70 8.82 -92.71 -0.82 7.88 16 30 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.14 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.05 1.11 8.06 -2.39 -0.02 1.09 16 33 H 0.06 1.12 8.06 -2.39 -0.02 1.10 16 34 H 0.14 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.42 0.90 9.10 -74.05 -0.67 0.23 16 Total: -1.00 -84.59 322.09 3.24 -81.35 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -0.26 Total: 12.54 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 5.16 Total: -1.21 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -3.35 Total: -107.15 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.36 Total: -37.20 kcal Atomic # 14 Polarization: 49.62 SS G_CDS: 2.05 Total: 51.67 kcal Total: -84.59 3.24 -81.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609947.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.405 kcal (2) G-P(sol) polarization free energy of solvation -84.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds