Wall clock time and date at job start Tue Mar 31 2020 05:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46956 * 2 1 4 4 C 1.39643 * 126.05623 * 125.28958 * 3 2 1 5 5 C 1.38518 * 105.34588 * 180.14386 * 4 3 2 6 6 C 1.47030 * 126.89429 * 179.86594 * 5 4 3 7 7 O 1.21674 * 119.99938 * 171.43455 * 6 5 4 8 8 N 1.34774 * 119.99674 * 351.41973 * 6 5 4 9 9 C 1.36845 * 119.99545 * 173.13899 * 8 6 5 10 10 H 1.07997 * 120.00152 * 315.08163 * 9 8 6 11 11 C 1.39050 * 119.99746 * 135.08309 * 9 8 6 12 12 N 1.31367 * 120.00024 * 161.17214 * 11 9 8 13 13 Si 1.86799 * 119.99991 * 341.17369 * 11 9 8 14 14 H 1.48504 * 109.47218 * 84.77869 * 13 11 9 15 15 H 1.48501 * 109.47251 * 204.77513 * 13 11 9 16 16 H 1.48497 * 109.47219 * 324.77836 * 13 11 9 17 17 C 1.46492 * 120.00484 * 353.14798 * 8 6 5 18 18 C 1.50701 * 109.47415 * 90.12766 * 17 8 6 19 19 O 1.20829 * 120.00073 * 5.54976 * 18 17 8 20 20 O 1.34227 * 120.00187 * 185.54375 * 18 17 8 21 21 N 1.36640 * 106.21080 * 359.59874 * 5 4 3 22 22 C 1.46504 * 125.19763 * 180.23653 * 21 5 4 23 23 N 1.28447 * 109.61037 * 0.26524 * 21 5 4 24 24 H 1.08992 * 109.47553 * 59.99453 * 1 2 3 25 25 H 1.09001 * 109.47288 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46418 * 299.99677 * 1 2 3 27 27 H 1.09004 * 109.46418 * 240.00323 * 2 1 3 28 28 H 1.08992 * 109.47553 * 120.00547 * 2 1 3 29 29 H 1.07998 * 127.32986 * 0.03207 * 4 3 2 30 30 H 0.97004 * 119.99918 * 180.02562 * 12 11 9 31 31 H 1.09006 * 109.47622 * 210.12871 * 17 8 6 32 32 H 1.09002 * 109.47358 * 330.12651 * 17 8 6 33 33 H 0.96703 * 117.00338 * 180.02562 * 20 18 17 34 34 H 1.08998 * 109.46583 * 93.21514 * 22 21 5 35 35 H 1.08999 * 109.47200 * 213.21577 * 22 21 5 36 36 H 1.08996 * 109.46748 * 333.22260 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9212 1.9784 0.9215 5 6 3.0836 3.2952 0.5236 6 6 3.9233 4.3151 1.1689 7 8 4.0978 5.3908 0.6278 8 7 4.4994 4.0585 2.3600 9 6 5.3913 4.9482 2.8944 10 1 6.1604 5.3816 2.2722 11 6 5.3073 5.2943 4.2385 12 7 6.3408 5.8344 4.8435 13 14 3.7250 4.9913 5.1839 14 1 3.7075 3.5934 5.6847 15 1 3.6471 5.9295 6.3324 16 1 2.5624 5.2101 4.2863 17 6 4.1710 2.8272 3.0825 18 6 5.1251 1.7348 2.6731 19 8 6.0512 1.9855 1.9387 20 8 4.9461 0.4834 3.1244 21 7 2.3116 3.4544 -0.5926 22 6 2.1813 4.6962 -1.3590 23 7 1.7172 2.3493 -0.8669 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 1.8932 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 3.3823 1.4878 1.7659 30 1 6.2823 6.0755 5.7813 31 1 4.2568 3.0013 4.1551 32 1 3.1508 2.5268 2.8437 33 1 5.5840 -0.1832 2.8348 34 1 2.9055 4.6980 -2.1736 35 1 1.1735 4.7663 -1.7685 36 1 2.3679 5.5480 -0.7051 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597427079.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:40 Heat of formation + Delta-G solvation = -13.936701 kcal Electronic energy + Delta-G solvation = -23119.074458 eV Core-core repulsion = 19606.855381 eV Total energy + Delta-G solvation = -3512.219077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.28693 -40.03507 -38.40987 -35.81649 -35.16837 -34.40413 -32.57353 -31.49775 -30.46478 -28.29391 -26.68507 -25.39856 -23.27223 -22.25230 -21.76464 -20.61549 -18.41697 -17.76652 -17.51175 -16.70611 -16.45720 -16.07195 -15.85218 -15.19664 -15.17618 -14.30667 -14.05223 -13.76528 -13.62245 -13.41117 -12.88018 -12.74701 -12.63815 -12.44768 -12.22514 -11.91938 -11.76966 -11.39974 -11.20318 -11.14584 -11.08656 -10.65776 -10.22709 -10.18345 -10.05706 -9.31143 -8.91548 -8.68820 -8.59738 -8.03097 -6.57191 -4.23607 1.73059 2.61306 2.76746 2.82770 2.88316 3.11052 3.14336 3.26441 3.93238 3.96327 4.16517 4.66098 4.79632 4.94967 5.18416 5.23524 5.34359 5.37146 5.43235 5.50556 5.64710 5.68958 5.72600 5.80490 5.85212 5.92655 5.96610 6.19887 6.26545 6.75913 6.85523 7.07806 7.29896 8.03797 8.20154 8.33039 8.41023 8.68165 9.02484 9.42116 10.53128 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017546 B = 0.007348 C = 0.006319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.422928 B = 3809.783150 C = 4430.102226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.034 4.034 3 C 0.026 3.974 4 C -0.233 4.233 5 C -0.003 4.003 6 C 0.541 3.459 7 O -0.547 6.547 8 N -0.425 5.425 9 C -0.310 4.310 10 H 0.109 0.891 11 C 0.066 3.934 12 N -0.849 5.849 13 Si 0.865 3.135 14 H -0.265 1.265 15 H -0.277 1.277 16 H -0.257 1.257 17 C 0.071 3.929 18 C 0.458 3.542 19 O -0.485 6.485 20 O -0.527 6.527 21 N -0.263 5.263 22 C 0.090 3.910 23 N -0.289 5.289 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.164 0.836 30 H 0.279 0.721 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.403 0.597 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.907 -10.962 -4.038 15.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 C -0.131 4.131 4 C -0.261 4.261 5 C -0.132 4.132 6 C 0.329 3.671 7 O -0.428 6.428 8 N -0.146 5.146 9 C -0.438 4.438 10 H 0.126 0.874 11 C -0.143 4.143 12 N -0.483 5.483 13 Si 0.690 3.310 14 H -0.192 1.192 15 H -0.203 1.203 16 H -0.181 1.181 17 C -0.055 4.055 18 C 0.297 3.703 19 O -0.370 6.370 20 O -0.339 6.339 21 N -0.049 5.049 22 C -0.051 4.051 23 N -0.122 5.122 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.181 0.819 30 H 0.089 0.911 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.261 0.739 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.366 -9.539 -5.275 15.042 hybrid contribution 0.402 -0.708 1.171 1.427 sum -9.964 -10.247 -4.104 14.870 Atomic orbital electron populations 1.21702 0.94809 1.01293 1.02424 1.19828 0.95959 0.88728 1.02796 1.21881 1.00349 0.96468 0.94431 1.22724 1.05554 0.93353 1.04477 1.21951 1.01452 0.96795 0.93047 1.16961 0.81147 0.85362 0.83604 1.90662 1.63467 1.24766 1.63934 1.42931 1.39201 1.14868 1.17638 1.18989 1.08428 1.21679 0.94661 0.87350 1.25488 0.96761 0.95339 0.96665 1.69689 1.28269 1.38569 1.11754 0.87180 0.85054 0.78308 0.80430 1.19194 1.20281 1.18103 1.22423 0.97757 0.84267 1.01017 1.24263 0.85852 0.82478 0.77697 1.90730 1.30792 1.82074 1.33392 1.84574 1.57579 1.20266 1.71484 1.45456 1.30841 1.09329 1.19308 1.22283 1.03306 0.82394 0.97070 1.72969 1.20893 0.92828 1.25502 0.92258 0.92556 0.92713 0.90786 0.90137 0.81916 0.91060 0.86492 0.86098 0.73909 0.90075 0.89533 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.87 37.16 0.37 -1.14 16 2 C -0.03 -0.40 6.51 -27.88 -0.18 -0.58 16 3 C 0.03 0.42 6.49 -82.48 -0.54 -0.11 16 4 C -0.23 -4.18 8.30 -38.95 -0.32 -4.50 16 5 C 0.00 -0.06 6.75 -82.06 -0.55 -0.61 16 6 C 0.54 13.01 7.57 -12.70 -0.10 12.92 16 7 O -0.55 -14.31 14.73 5.21 0.08 -14.24 16 8 N -0.43 -10.37 1.53 -117.46 -0.18 -10.55 16 9 C -0.31 -8.62 9.20 -15.01 -0.14 -8.76 16 10 H 0.11 3.40 8.06 -52.49 -0.42 2.98 16 11 C 0.07 1.76 5.32 -17.45 -0.09 1.66 16 12 N -0.85 -23.62 13.95 55.50 0.77 -22.85 16 13 Si 0.86 19.14 25.57 -169.99 -4.35 14.79 16 14 H -0.27 -5.26 6.27 56.52 0.35 -4.91 16 15 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 17 C 0.07 1.43 4.27 -5.20 -0.02 1.41 16 18 C 0.46 8.75 5.96 36.01 0.21 8.97 16 19 O -0.49 -11.12 17.18 -18.75 -0.32 -11.44 16 20 O -0.53 -7.36 13.04 -39.25 -0.51 -7.87 16 21 N -0.26 -4.84 3.75 -63.88 -0.24 -5.08 16 22 C 0.09 1.34 10.84 59.85 0.65 1.99 16 23 N -0.29 -5.02 11.87 33.63 0.40 -4.62 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16 29 H 0.16 2.72 3.14 -52.49 -0.16 2.55 16 30 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.12 2.37 3.72 -51.93 -0.19 2.18 16 32 H 0.12 2.13 4.95 -51.93 -0.26 1.87 16 33 H 0.40 3.79 9.10 45.56 0.41 4.20 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.11 1.85 6.33 -51.93 -0.33 1.52 16 LS Contribution 303.77 15.07 4.58 4.58 Total: -1.00 -33.78 303.77 -3.58 -37.36 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -3.09 Total: 8.70 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: -0.71 Total: 11.23 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.75 Total: -43.11 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -0.76 Total: -33.55 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.35 Total: 14.79 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.78 -3.58 -37.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597427079.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.421 kcal (2) G-P(sol) polarization free energy of solvation -33.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds