Wall clock time and date at job start Tue Mar 31 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46956 * 2 1 4 4 C 1.39643 * 126.05623 * 125.28958 * 3 2 1 5 5 C 1.38518 * 105.34588 * 180.14386 * 4 3 2 6 6 C 1.47030 * 126.89429 * 179.86594 * 5 4 3 7 7 O 1.21674 * 119.99938 * 171.43455 * 6 5 4 8 8 N 1.34774 * 119.99674 * 351.41973 * 6 5 4 9 9 C 1.36845 * 119.99545 * 173.13899 * 8 6 5 10 10 H 1.07997 * 120.00152 * 315.08163 * 9 8 6 11 11 C 1.39050 * 119.99746 * 135.08309 * 9 8 6 12 12 N 1.31367 * 120.00024 * 161.17214 * 11 9 8 13 13 Si 1.86799 * 119.99991 * 341.17369 * 11 9 8 14 14 H 1.48504 * 109.47218 * 84.77869 * 13 11 9 15 15 H 1.48501 * 109.47251 * 204.77513 * 13 11 9 16 16 H 1.48497 * 109.47219 * 324.77836 * 13 11 9 17 17 C 1.46492 * 120.00484 * 353.14798 * 8 6 5 18 18 C 1.50701 * 109.47415 * 90.12766 * 17 8 6 19 19 O 1.20829 * 120.00073 * 5.54976 * 18 17 8 20 20 O 1.34227 * 120.00187 * 185.54375 * 18 17 8 21 21 N 1.36640 * 106.21080 * 359.59874 * 5 4 3 22 22 C 1.46504 * 125.19763 * 180.23653 * 21 5 4 23 23 N 1.28447 * 109.61037 * 0.26524 * 21 5 4 24 24 H 1.08992 * 109.47553 * 59.99453 * 1 2 3 25 25 H 1.09001 * 109.47288 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46418 * 299.99677 * 1 2 3 27 27 H 1.09004 * 109.46418 * 240.00323 * 2 1 3 28 28 H 1.08992 * 109.47553 * 120.00547 * 2 1 3 29 29 H 1.07998 * 127.32986 * 0.03207 * 4 3 2 30 30 H 0.97004 * 119.99918 * 180.02562 * 12 11 9 31 31 H 1.09006 * 109.47622 * 210.12871 * 17 8 6 32 32 H 1.09002 * 109.47358 * 330.12651 * 17 8 6 33 33 H 0.96703 * 117.00338 * 180.02562 * 20 18 17 34 34 H 1.08998 * 109.46583 * 93.21514 * 22 21 5 35 35 H 1.08999 * 109.47200 * 213.21577 * 22 21 5 36 36 H 1.08996 * 109.46748 * 333.22260 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9212 1.9784 0.9215 5 6 3.0836 3.2952 0.5236 6 6 3.9233 4.3151 1.1689 7 8 4.0978 5.3908 0.6278 8 7 4.4994 4.0585 2.3600 9 6 5.3913 4.9482 2.8944 10 1 6.1604 5.3816 2.2722 11 6 5.3073 5.2943 4.2385 12 7 6.3408 5.8344 4.8435 13 14 3.7250 4.9913 5.1839 14 1 3.7075 3.5934 5.6847 15 1 3.6471 5.9295 6.3324 16 1 2.5624 5.2101 4.2863 17 6 4.1710 2.8272 3.0825 18 6 5.1251 1.7348 2.6731 19 8 6.0512 1.9855 1.9387 20 8 4.9461 0.4834 3.1244 21 7 2.3116 3.4544 -0.5926 22 6 2.1813 4.6962 -1.3590 23 7 1.7172 2.3493 -0.8669 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 1.8932 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 3.3823 1.4878 1.7659 30 1 6.2823 6.0755 5.7813 31 1 4.2568 3.0013 4.1551 32 1 3.1508 2.5268 2.8437 33 1 5.5840 -0.1832 2.8348 34 1 2.9055 4.6980 -2.1736 35 1 1.1735 4.7663 -1.7685 36 1 2.3679 5.5480 -0.7051 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597427079.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:39 Heat of formation + Delta-G solvation = -39.466594 kcal Electronic energy + Delta-G solvation = -23120.181517 eV Core-core repulsion = 19606.855381 eV Total energy + Delta-G solvation = -3513.326137 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.69377 -41.58480 -40.15533 -37.36096 -36.79578 -35.63604 -34.49517 -32.72770 -31.94238 -29.94931 -27.96754 -27.22468 -24.28068 -23.87622 -23.27243 -22.12222 -19.87315 -19.40654 -19.18694 -18.22511 -18.15296 -17.58761 -17.25265 -16.91509 -16.70707 -15.74870 -15.52219 -15.07022 -14.98430 -14.75850 -14.53297 -14.46429 -14.11071 -13.78502 -13.55841 -13.32600 -13.01628 -12.94797 -12.59476 -12.40601 -12.28298 -12.07750 -11.98020 -11.77608 -11.43935 -11.18370 -10.76724 -10.18564 -10.03479 -9.83203 -8.59822 -6.35093 0.17610 1.10691 1.14905 1.32319 1.38814 1.43202 1.52856 1.81046 2.10373 2.20819 2.47746 2.89914 3.39805 3.44270 3.83024 3.92624 4.06214 4.22569 4.26043 4.26832 4.37399 4.48423 4.52774 4.60265 4.77265 4.83222 5.15864 5.27345 5.34445 5.43034 5.49157 5.60381 5.78032 5.93561 6.27876 6.67834 6.93407 7.01800 7.06224 7.50065 8.55882 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017546 B = 0.007348 C = 0.006319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.422928 B = 3809.783150 C = 4430.102226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.035 4.035 3 C 0.030 3.970 4 C -0.222 4.222 5 C -0.038 4.038 6 C 0.535 3.465 7 O -0.586 6.586 8 N -0.436 5.436 9 C -0.332 4.332 10 H 0.045 0.955 11 C 0.022 3.978 12 N -0.896 5.896 13 Si 0.929 3.071 14 H -0.216 1.216 15 H -0.272 1.272 16 H -0.259 1.259 17 C 0.065 3.935 18 C 0.470 3.530 19 O -0.532 6.532 20 O -0.499 6.499 21 N -0.267 5.267 22 C 0.085 3.915 23 N -0.287 5.287 24 H 0.047 0.953 25 H 0.082 0.918 26 H 0.049 0.951 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.177 0.823 30 H 0.286 0.714 31 H 0.122 0.878 32 H 0.154 0.846 33 H 0.429 0.571 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.774 -14.438 -3.235 19.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 C -0.127 4.127 4 C -0.250 4.250 5 C -0.167 4.167 6 C 0.325 3.675 7 O -0.470 6.470 8 N -0.157 5.157 9 C -0.460 4.460 10 H 0.063 0.937 11 C -0.183 4.183 12 N -0.531 5.531 13 Si 0.749 3.251 14 H -0.140 1.140 15 H -0.197 1.197 16 H -0.183 1.183 17 C -0.059 4.059 18 C 0.311 3.689 19 O -0.421 6.421 20 O -0.313 6.313 21 N -0.054 5.054 22 C -0.054 4.054 23 N -0.120 5.120 24 H 0.066 0.934 25 H 0.101 0.899 26 H 0.068 0.932 27 H 0.105 0.895 28 H 0.122 0.878 29 H 0.194 0.806 30 H 0.096 0.904 31 H 0.139 0.861 32 H 0.171 0.829 33 H 0.291 0.709 34 H 0.107 0.893 35 H 0.139 0.861 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.229 -13.078 -4.459 19.129 hybrid contribution 1.320 0.285 0.800 1.570 sum -11.909 -12.793 -3.658 17.857 Atomic orbital electron populations 1.21679 0.93691 1.02853 1.01633 1.20083 0.96850 0.85879 1.04608 1.22622 0.99080 0.98062 0.92950 1.22923 1.05108 0.92190 1.04818 1.21568 1.03066 0.97074 0.94987 1.17507 0.80873 0.85738 0.83365 1.90619 1.64780 1.26651 1.64913 1.42866 1.38705 1.16072 1.18043 1.18479 1.08462 1.24232 0.94797 0.93733 1.26273 1.00344 0.94583 0.97109 1.69797 1.30656 1.39989 1.12651 0.86168 0.79108 0.81106 0.78692 1.13991 1.19701 1.18300 1.22550 0.99604 0.83117 1.00659 1.23843 0.84583 0.83722 0.76751 1.90740 1.32556 1.83132 1.35665 1.84477 1.57966 1.18647 1.70222 1.45753 1.30367 1.10322 1.18909 1.22434 1.05629 0.80854 0.96524 1.73016 1.20533 0.92757 1.25688 0.93411 0.89865 0.93169 0.89488 0.87805 0.80635 0.90352 0.86115 0.82930 0.70881 0.89291 0.86096 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.87 71.98 0.71 -1.63 16 2 C -0.04 -0.68 6.51 29.85 0.19 -0.48 16 3 C 0.03 0.87 6.49 43.04 0.28 1.14 16 4 C -0.22 -7.40 8.30 22.68 0.19 -7.21 16 5 C -0.04 -1.53 6.75 40.77 0.28 -1.26 16 6 C 0.54 26.62 7.57 86.55 0.65 27.27 16 7 O -0.59 -32.61 14.73 -4.26 -0.06 -32.67 16 8 N -0.44 -21.76 1.53 -643.77 -0.99 -22.74 16 9 C -0.33 -19.52 9.20 84.11 0.77 -18.74 16 10 H 0.04 3.10 8.06 -2.91 -0.02 3.08 16 11 C 0.02 1.19 5.32 84.96 0.45 1.64 16 12 N -0.90 -51.78 13.95 21.68 0.30 -51.48 16 13 Si 0.93 38.64 25.57 68.60 1.75 40.39 16 14 H -0.22 -7.30 6.27 99.48 0.62 -6.68 16 15 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 16 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 17 C 0.06 2.51 4.27 85.63 0.37 2.87 16 18 C 0.47 17.04 5.96 71.24 0.42 17.47 16 19 O -0.53 -24.42 17.18 21.96 0.38 -24.05 16 20 O -0.50 -11.82 13.04 -51.39 -0.67 -12.49 16 21 N -0.27 -9.57 3.75 -356.03 -1.34 -10.90 16 22 C 0.08 2.53 10.84 127.77 1.38 3.91 16 23 N -0.29 -9.29 11.87 -47.51 -0.56 -9.86 16 24 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.05 0.88 8.14 -2.38 -0.02 0.87 16 27 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.10 1.53 8.12 -2.39 -0.02 1.51 16 29 H 0.18 5.24 3.14 -2.91 -0.01 5.23 16 30 H 0.29 14.96 8.31 -92.71 -0.77 14.19 16 31 H 0.12 4.54 3.72 -2.38 -0.01 4.53 16 32 H 0.15 4.87 4.95 -2.39 -0.01 4.85 16 33 H 0.43 6.14 9.10 -74.05 -0.67 5.47 16 34 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.12 2.67 8.14 -2.39 -0.02 2.66 16 36 H 0.09 3.17 6.33 -2.39 -0.02 3.15 16 Total: -1.00 -79.58 303.77 4.91 -74.67 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.39 Total: 24.16 kcal Atomic # 6 Polarization: 19.27 SS G_CDS: 5.70 Total: 24.98 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -2.58 Total: -94.99 kcal Atomic # 8 Polarization: -68.85 SS G_CDS: -0.36 Total: -69.20 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 1.75 Total: 40.39 kcal Total: -79.58 4.91 -74.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597427079.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.200 kcal (2) G-P(sol) polarization free energy of solvation -79.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds