Wall clock time and date at job start Tue Mar 31 2020 05:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35454 * 117.00008 * 2 1 4 4 N 1.32333 * 119.19641 * 0.02562 * 3 2 1 5 5 C 1.32279 * 120.76332 * 179.73208 * 4 3 2 6 6 C 1.38618 * 119.17262 * 0.52174 * 5 4 3 7 7 C 1.50693 * 120.74379 * 179.73836 * 6 5 4 8 8 N 1.46500 * 109.47177 * 357.98799 * 7 6 5 9 9 C 1.36937 * 119.99934 * 272.91828 * 8 7 6 10 10 H 1.07999 * 120.00243 * 18.04237 * 9 8 7 11 11 C 1.38815 * 119.99637 * 198.04663 * 9 8 7 12 12 N 1.31619 * 120.00270 * 21.56075 * 11 9 8 13 13 Si 1.86799 * 119.99737 * 201.56114 * 11 9 8 14 14 H 1.48508 * 109.47085 * 90.00095 * 13 11 9 15 15 H 1.48503 * 109.47202 * 209.99980 * 13 11 9 16 16 H 1.48496 * 109.47278 * 330.00077 * 13 11 9 17 17 C 1.46504 * 120.00091 * 92.91153 * 8 7 6 18 18 C 1.50703 * 109.46800 * 84.05815 * 17 8 7 19 19 O 1.20818 * 120.00234 * 0.02562 * 18 17 8 20 20 O 1.34230 * 119.99530 * 180.02562 * 18 17 8 21 21 C 1.38572 * 118.51842 * 359.47223 * 6 5 4 22 22 C 1.50702 * 120.41515 * 180.25195 * 21 6 5 23 23 N 1.32307 * 119.19686 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47077 * 60.00951 * 1 2 3 25 25 H 1.09003 * 109.47303 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47533 * 300.00364 * 1 2 3 27 27 H 1.08002 * 120.42046 * 180.28367 * 5 4 3 28 28 H 1.09001 * 109.47589 * 237.98909 * 7 6 5 29 29 H 1.09002 * 109.47078 * 117.98565 * 7 6 5 30 30 H 0.96999 * 120.00020 * 179.97438 * 12 11 9 31 31 H 1.08995 * 109.47431 * 204.05649 * 17 8 7 32 32 H 1.08998 * 109.46832 * 324.06239 * 17 8 7 33 33 H 0.96701 * 116.99873 * 180.02562 * 20 18 17 34 34 H 1.08999 * 109.46940 * 84.63496 * 22 21 6 35 35 H 1.08998 * 109.47438 * 204.63920 * 22 21 6 36 36 H 1.08999 * 109.46588 * 324.63420 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2069 0.0000 4 7 1.3077 2.3065 0.0005 5 6 1.8758 3.5011 0.0058 6 6 3.2590 3.5916 -0.0001 7 6 3.9432 4.9342 -0.0002 8 7 2.9348 5.9961 -0.0420 9 6 2.4516 6.4345 -1.2459 10 1 2.5765 5.8284 -2.1310 11 6 1.8013 7.6581 -1.3287 12 7 2.0037 8.5748 -0.4062 13 14 0.6387 8.0036 -2.7494 14 1 -0.7354 7.5791 -2.3791 15 1 0.6433 9.4578 -3.0504 16 1 1.0838 7.2486 -3.9481 17 6 2.4433 6.5890 1.2044 18 6 3.3883 7.6746 1.6510 19 8 4.3712 7.9275 0.9954 20 8 3.1381 8.3606 2.7773 21 6 3.9986 2.4198 -0.0003 22 6 5.5049 2.4683 -0.0009 23 7 3.3660 1.2576 0.0005 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.2695 4.3949 0.0109 28 1 4.5897 5.0126 -0.8743 29 1 4.5418 5.0370 0.9049 30 1 1.5496 9.4299 -0.4643 31 1 1.4536 7.0144 1.0388 32 1 2.3841 5.8195 1.9741 33 1 3.7726 9.0477 3.0230 34 1 5.8653 2.5761 1.0221 35 1 5.8980 1.5463 -0.4293 36 1 5.8407 3.3175 -0.5960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599733815.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:33 Heat of formation + Delta-G solvation = -45.672737 kcal Electronic energy + Delta-G solvation = -22461.626368 eV Core-core repulsion = 18948.031112 eV Total energy + Delta-G solvation = -3513.595255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.91803 -38.82363 -38.22651 -36.01858 -34.53203 -34.02261 -32.62425 -30.87896 -28.58146 -27.57798 -27.17702 -25.80801 -23.43861 -22.23945 -21.48030 -20.07839 -18.12017 -17.62034 -17.00871 -16.66984 -16.16011 -15.48917 -15.17631 -14.58543 -14.35531 -14.25377 -14.17572 -13.67005 -13.49297 -13.31514 -12.79343 -12.71025 -12.13712 -11.93950 -11.89302 -11.74582 -11.30801 -11.07147 -10.87512 -10.78067 -10.71072 -10.28435 -10.19786 -10.13149 -10.05083 -9.29975 -8.80146 -8.72608 -8.26712 -7.24967 -6.06658 -3.43903 1.37350 1.51971 2.81705 3.28453 3.36835 3.37644 3.79688 4.12200 4.19648 4.45116 4.47433 4.80880 4.99218 5.06565 5.19172 5.27762 5.33768 5.52426 5.61107 5.64281 5.67670 5.81588 6.06893 6.16630 6.21841 6.32539 6.55922 6.63429 6.80207 6.86655 7.12693 7.54166 7.59267 7.77413 8.03126 8.45230 8.87139 9.33230 9.55337 9.96717 11.04092 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.005997 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.806885 B = 4667.596063 C = 5527.144454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.299 6.299 3 C 0.477 3.523 4 N -0.575 5.575 5 C 0.208 3.792 6 C -0.227 4.227 7 C 0.196 3.804 8 N -0.566 5.566 9 C -0.267 4.267 10 H 0.081 0.919 11 C 0.009 3.991 12 N -0.898 5.898 13 Si 0.909 3.091 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.278 1.278 17 C 0.187 3.813 18 C 0.477 3.523 19 O -0.513 6.513 20 O -0.544 6.544 21 C 0.197 3.803 22 C -0.104 4.104 23 N -0.533 5.533 24 H 0.060 0.940 25 H 0.097 0.903 26 H 0.060 0.940 27 H 0.188 0.812 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.259 0.741 31 H 0.113 0.887 32 H 0.053 0.947 33 H 0.382 0.618 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.101 -9.538 4.093 10.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.201 6.201 3 C 0.174 3.826 4 N -0.304 5.304 5 C 0.044 3.956 6 C -0.235 4.235 7 C 0.067 3.933 8 N -0.285 5.285 9 C -0.396 4.396 10 H 0.099 0.901 11 C -0.190 4.190 12 N -0.541 5.541 13 Si 0.739 3.261 14 H -0.211 1.211 15 H -0.218 1.218 16 H -0.204 1.204 17 C 0.058 3.942 18 C 0.317 3.683 19 O -0.399 6.399 20 O -0.355 6.355 21 C 0.051 3.949 22 C -0.161 4.161 23 N -0.259 5.259 24 H 0.079 0.921 25 H 0.115 0.885 26 H 0.079 0.921 27 H 0.205 0.795 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.131 0.869 32 H 0.070 0.930 33 H 0.238 0.762 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.391 -10.814 3.758 11.455 hybrid contribution -0.033 1.888 -0.675 2.005 sum -0.423 -8.927 3.083 9.453 Atomic orbital electron populations 1.22882 0.76329 1.02773 1.02829 1.86002 1.22859 1.23382 1.87901 1.20609 0.86126 0.84821 0.91054 1.68144 1.41451 0.99351 1.21417 1.23251 0.92907 0.93654 0.85809 1.22603 0.96650 0.99230 1.04968 1.19558 0.89988 0.83115 1.00605 1.43991 1.44037 1.38074 1.02407 1.19261 1.31540 1.01263 0.87512 0.90092 1.24896 1.01121 0.94661 0.98353 1.69847 1.42585 1.05104 1.36614 0.86176 0.81136 0.77161 0.81644 1.21082 1.21770 1.20367 1.20257 0.96976 0.90161 0.86825 1.25137 0.85589 0.82094 0.75477 1.90513 1.30160 1.66245 1.52938 1.84622 1.56041 1.50079 1.44712 1.21296 0.97065 0.86351 0.90157 1.20771 0.87838 1.03965 1.03531 1.67286 1.07777 1.30094 1.20736 0.92082 0.88491 0.92123 0.79548 0.91084 0.92277 0.93040 0.86900 0.92955 0.76243 0.89753 0.90340 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.56 10.36 101.05 1.05 1.61 16 2 O -0.30 -4.82 10.55 -18.05 -0.19 -5.01 16 3 C 0.48 8.58 8.49 -91.25 -0.77 7.80 16 4 N -0.57 -10.34 9.23 -14.73 -0.14 -10.48 16 5 C 0.21 3.78 10.43 -17.22 -0.18 3.60 16 6 C -0.23 -3.96 5.90 -104.36 -0.62 -4.58 16 7 C 0.20 3.62 4.96 -5.20 -0.03 3.59 16 8 N -0.57 -12.33 0.87 -175.98 -0.15 -12.48 16 9 C -0.27 -6.53 8.96 -15.06 -0.13 -6.67 16 10 H 0.08 1.98 7.92 -52.49 -0.42 1.57 16 11 C 0.01 0.23 4.86 -17.43 -0.08 0.14 16 12 N -0.90 -23.92 9.25 55.49 0.51 -23.41 16 13 Si 0.91 20.49 29.60 -169.99 -5.03 15.46 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 17 C 0.19 3.96 5.17 -5.19 -0.03 3.93 16 18 C 0.48 10.71 6.50 36.01 0.23 10.95 16 19 O -0.51 -13.21 16.78 -18.74 -0.31 -13.52 16 20 O -0.54 -10.40 13.42 -39.26 -0.53 -10.92 16 21 C 0.20 3.20 6.82 -82.26 -0.56 2.64 16 22 C -0.10 -1.27 9.72 36.01 0.35 -0.92 16 23 N -0.53 -9.53 10.40 -10.95 -0.11 -9.65 16 24 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 25 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 27 H 0.19 3.52 6.40 -52.49 -0.34 3.19 16 28 H 0.07 1.34 7.43 -51.93 -0.39 0.95 16 29 H 0.06 1.04 8.05 -51.93 -0.42 0.62 16 30 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.11 2.58 6.48 -51.93 -0.34 2.24 16 32 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 33 H 0.38 5.78 9.10 45.56 0.41 6.19 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.00 6.94 -51.93 -0.36 0.64 16 LS Contribution 312.96 15.07 4.72 4.72 Total: -1.00 -31.49 312.96 -5.51 -37.01 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -3.50 Total: 6.18 kcal Atomic # 6 Polarization: 22.88 SS G_CDS: -0.77 Total: 22.11 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.11 Total: -56.02 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -1.03 Total: -29.45 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.49 -5.51 -37.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599733815.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.667 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds