Wall clock time and date at job start Tue Mar 31 2020 05:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35454 * 117.00008 * 2 1 4 4 N 1.32333 * 119.19641 * 0.02562 * 3 2 1 5 5 C 1.32279 * 120.76332 * 179.73208 * 4 3 2 6 6 C 1.38618 * 119.17262 * 0.52174 * 5 4 3 7 7 C 1.50693 * 120.74379 * 179.73836 * 6 5 4 8 8 N 1.46500 * 109.47177 * 357.98799 * 7 6 5 9 9 C 1.36937 * 119.99934 * 272.91828 * 8 7 6 10 10 H 1.07999 * 120.00243 * 18.04237 * 9 8 7 11 11 C 1.38815 * 119.99637 * 198.04663 * 9 8 7 12 12 N 1.31619 * 120.00270 * 21.56075 * 11 9 8 13 13 Si 1.86799 * 119.99737 * 201.56114 * 11 9 8 14 14 H 1.48508 * 109.47085 * 90.00095 * 13 11 9 15 15 H 1.48503 * 109.47202 * 209.99980 * 13 11 9 16 16 H 1.48496 * 109.47278 * 330.00077 * 13 11 9 17 17 C 1.46504 * 120.00091 * 92.91153 * 8 7 6 18 18 C 1.50703 * 109.46800 * 84.05815 * 17 8 7 19 19 O 1.20818 * 120.00234 * 0.02562 * 18 17 8 20 20 O 1.34230 * 119.99530 * 180.02562 * 18 17 8 21 21 C 1.38572 * 118.51842 * 359.47223 * 6 5 4 22 22 C 1.50702 * 120.41515 * 180.25195 * 21 6 5 23 23 N 1.32307 * 119.19686 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47077 * 60.00951 * 1 2 3 25 25 H 1.09003 * 109.47303 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47533 * 300.00364 * 1 2 3 27 27 H 1.08002 * 120.42046 * 180.28367 * 5 4 3 28 28 H 1.09001 * 109.47589 * 237.98909 * 7 6 5 29 29 H 1.09002 * 109.47078 * 117.98565 * 7 6 5 30 30 H 0.96999 * 120.00020 * 179.97438 * 12 11 9 31 31 H 1.08995 * 109.47431 * 204.05649 * 17 8 7 32 32 H 1.08998 * 109.46832 * 324.06239 * 17 8 7 33 33 H 0.96701 * 116.99873 * 180.02562 * 20 18 17 34 34 H 1.08999 * 109.46940 * 84.63496 * 22 21 6 35 35 H 1.08998 * 109.47438 * 204.63920 * 22 21 6 36 36 H 1.08999 * 109.46588 * 324.63420 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2069 0.0000 4 7 1.3077 2.3065 0.0005 5 6 1.8758 3.5011 0.0058 6 6 3.2590 3.5916 -0.0001 7 6 3.9432 4.9342 -0.0002 8 7 2.9348 5.9961 -0.0420 9 6 2.4516 6.4345 -1.2459 10 1 2.5765 5.8284 -2.1310 11 6 1.8013 7.6581 -1.3287 12 7 2.0037 8.5748 -0.4062 13 14 0.6387 8.0036 -2.7494 14 1 -0.7354 7.5791 -2.3791 15 1 0.6433 9.4578 -3.0504 16 1 1.0838 7.2486 -3.9481 17 6 2.4433 6.5890 1.2044 18 6 3.3883 7.6746 1.6510 19 8 4.3712 7.9275 0.9954 20 8 3.1381 8.3606 2.7773 21 6 3.9986 2.4198 -0.0003 22 6 5.5049 2.4683 -0.0009 23 7 3.3660 1.2576 0.0005 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.2695 4.3949 0.0109 28 1 4.5897 5.0126 -0.8743 29 1 4.5418 5.0370 0.9049 30 1 1.5496 9.4299 -0.4643 31 1 1.4536 7.0144 1.0388 32 1 2.3841 5.8195 1.9741 33 1 3.7726 9.0477 3.0230 34 1 5.8653 2.5761 1.0221 35 1 5.8980 1.5463 -0.4293 36 1 5.8407 3.3175 -0.5960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599733815.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:33 Heat of formation + Delta-G solvation = -68.679489 kcal Electronic energy + Delta-G solvation = -22462.624015 eV Core-core repulsion = 18948.031112 eV Total energy + Delta-G solvation = -3514.592903 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.24228 -40.53105 -39.47618 -37.64722 -36.25388 -35.31702 -34.22791 -32.49286 -29.91382 -28.95226 -28.48097 -27.31264 -25.01215 -23.59468 -22.93954 -21.76835 -19.38823 -18.97806 -18.76184 -18.35699 -17.39412 -17.14111 -16.93261 -15.99907 -15.89200 -15.64625 -15.53215 -15.14332 -15.03600 -14.81008 -14.06790 -13.76173 -13.58698 -13.44709 -13.15059 -12.93962 -12.86102 -12.78544 -12.47158 -12.20302 -12.13643 -11.99859 -11.99002 -11.81971 -11.43784 -11.09573 -10.58432 -10.15439 -9.61094 -9.03561 -7.97713 -5.33606 0.06131 0.14495 1.48681 1.52637 1.58388 1.64822 2.04839 2.45972 2.77417 2.79908 3.14409 3.23813 3.48872 3.66679 3.75209 4.15151 4.27232 4.40761 4.44815 4.60009 4.65913 4.71680 4.74947 4.82224 4.87330 5.05770 5.11750 5.21548 5.24525 5.38173 5.65496 5.84018 6.17919 6.20732 6.24066 7.01278 7.12057 7.61129 7.79267 8.13188 9.11213 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.005997 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.806885 B = 4667.596063 C = 5527.144454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.309 6.309 3 C 0.469 3.531 4 N -0.581 5.581 5 C 0.199 3.801 6 C -0.232 4.232 7 C 0.203 3.797 8 N -0.575 5.575 9 C -0.259 4.259 10 H 0.077 0.923 11 C -0.036 4.036 12 N -0.923 5.923 13 Si 0.961 3.039 14 H -0.281 1.281 15 H -0.303 1.303 16 H -0.276 1.276 17 C 0.188 3.812 18 C 0.481 3.519 19 O -0.551 6.551 20 O -0.536 6.536 21 C 0.204 3.796 22 C -0.102 4.102 23 N -0.547 5.547 24 H 0.057 0.943 25 H 0.134 0.866 26 H 0.060 0.940 27 H 0.177 0.823 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.251 0.749 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.402 0.598 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.407 -10.840 4.451 11.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.211 6.211 3 C 0.166 3.834 4 N -0.311 5.311 5 C 0.036 3.964 6 C -0.239 4.239 7 C 0.076 3.924 8 N -0.294 5.294 9 C -0.388 4.388 10 H 0.095 0.905 11 C -0.233 4.233 12 N -0.568 5.568 13 Si 0.791 3.209 14 H -0.208 1.208 15 H -0.231 1.231 16 H -0.202 1.202 17 C 0.059 3.941 18 C 0.322 3.678 19 O -0.440 6.440 20 O -0.347 6.347 21 C 0.058 3.942 22 C -0.159 4.159 23 N -0.274 5.274 24 H 0.075 0.925 25 H 0.152 0.848 26 H 0.079 0.921 27 H 0.193 0.807 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.260 0.740 34 H 0.123 0.877 35 H 0.108 0.892 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.099 -12.144 4.136 12.829 hybrid contribution -0.132 2.205 -0.725 2.325 sum -0.231 -9.938 3.411 10.510 Atomic orbital electron populations 1.23191 0.74204 1.05210 1.02621 1.86017 1.24979 1.22563 1.87530 1.20917 0.86493 0.85346 0.90657 1.68132 1.41566 0.99330 1.22105 1.23126 0.93299 0.93532 0.86461 1.22406 0.96324 0.99050 1.06134 1.19552 0.89361 0.82415 1.01056 1.44048 1.44977 1.38529 1.01872 1.19398 1.30516 1.00606 0.88323 0.90506 1.25430 1.02664 0.94897 1.00274 1.69971 1.43670 1.05082 1.38099 0.85358 0.79842 0.75987 0.79713 1.20772 1.23054 1.20167 1.20267 0.95739 0.90716 0.87414 1.25284 0.84911 0.82090 0.75481 1.90494 1.31758 1.67469 1.54269 1.84552 1.56457 1.50425 1.43310 1.21867 0.98800 0.85414 0.88138 1.20918 0.84936 1.04964 1.05093 1.67423 1.07873 1.30625 1.21456 0.92461 0.84769 0.92111 0.80658 0.91414 0.91056 0.93980 0.88723 0.89840 0.74014 0.87659 0.89218 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.92 10.36 113.37 1.17 2.10 16 2 O -0.31 -9.50 10.55 -87.52 -0.92 -10.42 16 3 C 0.47 16.32 8.49 180.57 1.53 17.86 16 4 N -0.58 -20.50 9.23 -313.46 -2.89 -23.39 16 5 C 0.20 7.12 10.43 84.72 0.88 8.00 16 6 C -0.23 -7.78 5.90 -19.70 -0.12 -7.90 16 7 C 0.20 7.26 4.96 85.63 0.42 7.68 16 8 N -0.57 -24.69 0.87 -710.69 -0.62 -25.31 16 9 C -0.26 -12.60 8.96 84.03 0.75 -11.85 16 10 H 0.08 3.74 7.92 -2.91 -0.02 3.72 16 11 C -0.04 -1.85 4.86 84.86 0.41 -1.44 16 12 N -0.92 -49.50 9.25 21.65 0.20 -49.30 16 13 Si 0.96 42.44 29.60 68.60 2.03 44.47 16 14 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 15 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 16 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 17 C 0.19 7.81 5.17 85.63 0.44 8.25 16 18 C 0.48 21.18 6.50 71.24 0.46 21.64 16 19 O -0.55 -28.10 16.78 21.99 0.37 -27.73 16 20 O -0.54 -19.71 13.42 -51.42 -0.69 -20.40 16 21 C 0.20 6.24 6.82 42.57 0.29 6.53 16 22 C -0.10 -2.22 9.72 71.24 0.69 -1.53 16 23 N -0.55 -18.70 10.40 -301.51 -3.14 -21.84 16 24 H 0.06 1.28 8.09 -2.39 -0.02 1.27 16 25 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.06 1.31 8.09 -2.39 -0.02 1.30 16 27 H 0.18 6.63 6.40 -2.91 -0.02 6.61 16 28 H 0.07 2.46 7.43 -2.39 -0.02 2.44 16 29 H 0.07 2.37 8.05 -2.39 -0.02 2.35 16 30 H 0.25 13.43 8.31 -92.71 -0.77 12.66 16 31 H 0.09 4.33 6.48 -2.39 -0.02 4.31 16 32 H 0.08 2.91 8.12 -2.39 -0.02 2.89 16 33 H 0.40 11.48 9.10 -74.06 -0.67 10.80 16 34 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.10 1.94 6.94 -2.39 -0.02 1.92 16 Total: -1.00 -66.43 312.96 1.74 -64.69 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.45 Total: 19.88 kcal Atomic # 6 Polarization: 42.40 SS G_CDS: 6.95 Total: 49.35 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -6.45 Total: -119.84 kcal Atomic # 8 Polarization: -57.30 SS G_CDS: -1.24 Total: -58.55 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -66.43 1.74 -64.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599733815.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.987 kcal (2) G-P(sol) polarization free energy of solvation -66.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds