Wall clock time and date at job start Tue Mar 31 2020 05:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38043 * 126.29185 * 2 1 4 4 C 1.47437 * 126.41547 * 359.97438 * 3 2 1 5 5 O 1.21602 * 119.99587 * 0.02562 * 4 3 2 6 6 N 1.34770 * 120.00229 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99955 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.47175 * 324.99716 * 7 6 4 9 9 C 1.53006 * 109.46998 * 84.99585 * 7 6 4 10 10 C 1.50697 * 109.46896 * 204.99514 * 7 6 4 11 11 O 1.20822 * 120.00115 * 359.97438 * 10 7 6 12 12 O 1.34234 * 119.99749 * 179.97438 * 10 7 6 13 13 C 1.41295 * 107.17361 * 180.26000 * 3 2 1 14 14 N 1.30449 * 108.01932 * 359.58481 * 13 3 2 15 15 N 1.34265 * 126.29588 * 180.02562 * 2 1 3 16 16 C 1.46504 * 125.74845 * 359.97438 * 15 2 1 17 17 C 1.50705 * 109.47006 * 89.99988 * 16 15 2 18 18 H 1.08000 * 119.99801 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00027 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99994 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99840 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47008 * 90.00274 * 21 19 17 23 23 H 1.48498 * 109.47418 * 209.99801 * 21 19 17 24 24 H 1.48499 * 109.47489 * 330.00553 * 21 19 17 25 25 H 1.09007 * 109.46817 * 89.98328 * 1 2 3 26 26 H 1.08994 * 109.46927 * 209.97523 * 1 2 3 27 27 H 1.08995 * 109.47234 * 329.98323 * 1 2 3 28 28 H 0.96997 * 119.99935 * 359.97438 * 6 4 3 29 29 H 1.09001 * 109.47002 * 179.97438 * 9 7 6 30 30 H 1.08993 * 109.46955 * 300.00226 * 9 7 6 31 31 H 1.09000 * 109.47050 * 60.00054 * 9 7 6 32 32 H 0.96696 * 116.99726 * 180.02562 * 12 10 7 33 33 H 1.07994 * 125.98806 * 179.73514 * 13 3 2 34 34 H 1.08998 * 109.46557 * 209.99321 * 16 15 2 35 35 H 1.08994 * 109.47338 * 329.99819 * 16 15 2 36 36 H 0.96998 * 120.00113 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1126 0.0000 4 6 1.8858 2.5204 -0.0005 5 8 0.6995 2.7878 -0.0006 6 7 2.7998 3.5107 -0.0010 7 6 2.3643 4.9095 -0.0009 8 1 1.4523 5.0061 -0.5901 9 6 2.0931 5.3591 1.4362 10 6 3.4442 5.7718 -0.6018 11 8 4.4724 5.2696 -0.9898 12 8 3.2639 7.0979 -0.7060 13 6 3.6590 0.6499 -0.0061 14 7 3.6341 -0.6544 -0.0005 15 7 2.3018 -1.0821 -0.0005 16 6 1.8501 -2.4758 -0.0006 17 6 1.6947 -2.9534 -1.4215 18 1 1.9104 -2.2855 -2.2423 19 6 1.2773 -4.2431 -1.6735 20 7 1.1412 -4.6597 -2.9135 21 14 0.9050 -5.3985 -0.2538 22 1 -0.5259 -5.2738 0.1238 23 1 1.1879 -6.7968 -0.6662 24 1 1.7566 -5.0436 0.9098 25 1 -0.3633 0.0003 -1.0277 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3633 0.8898 0.5141 28 1 3.7460 3.2974 -0.0006 29 1 1.7695 6.4000 1.4363 30 1 1.3121 4.7354 1.8708 31 1 3.0051 5.2625 2.0253 32 1 3.9845 7.6094 -1.0984 33 1 4.5448 1.2677 -0.0117 34 1 2.5850 -3.0958 0.5128 35 1 0.8917 -2.5472 0.5136 36 1 0.8472 -5.5668 -3.0908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599982223.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:06 Heat of formation + Delta-G solvation = -58.670156 kcal Electronic energy + Delta-G solvation = -21582.601754 eV Core-core repulsion = 18068.442888 eV Total energy + Delta-G solvation = -3514.158866 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.04620 -40.65473 -38.87093 -36.55423 -35.13640 -33.92981 -32.26463 -31.52818 -30.78365 -27.81492 -26.77635 -25.37655 -23.26072 -22.42834 -21.15451 -20.02836 -19.17008 -18.32931 -17.70793 -17.23092 -16.46603 -16.21186 -15.58128 -15.06431 -15.01049 -14.46921 -14.22608 -13.89062 -13.65109 -13.48546 -12.84519 -12.73892 -12.56920 -12.50518 -12.29146 -12.10226 -11.98983 -11.84837 -11.62838 -11.23430 -10.85144 -10.80770 -10.42173 -10.26845 -9.80567 -9.57168 -9.25884 -8.85714 -8.67262 -8.01585 -6.33491 -4.38395 1.80553 2.04915 2.38745 2.70928 3.05121 3.11535 3.17701 3.21745 3.44636 3.79083 4.15059 4.65676 4.72948 4.88354 4.91206 5.06529 5.14430 5.35265 5.44444 5.53435 5.64545 5.83789 5.88453 6.01596 6.09381 6.23578 6.29687 6.42610 6.49773 6.57723 6.99217 7.17384 7.46210 7.53002 7.59435 8.19026 8.25113 8.43449 8.69822 9.20203 10.78758 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036804 B = 0.003532 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.602423 B = 7924.867790 C = 8126.734206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.171 3.829 3 C -0.330 4.330 4 C 0.612 3.388 5 O -0.551 6.551 6 N -0.724 5.724 7 C 0.158 3.842 8 H 0.128 0.872 9 C -0.158 4.158 10 C 0.478 3.522 11 O -0.508 6.508 12 O -0.510 6.510 13 C 0.064 3.936 14 N -0.291 5.291 15 N -0.313 5.313 16 C 0.224 3.776 17 C -0.546 4.546 18 H 0.082 0.918 19 C 0.081 3.919 20 N -0.883 5.883 21 Si 0.873 3.127 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.263 1.263 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.408 0.592 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.413 0.587 33 H 0.179 0.821 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.691 19.477 8.521 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.034 3.966 3 C -0.346 4.346 4 C 0.403 3.597 5 O -0.430 6.430 6 N -0.379 5.379 7 C 0.051 3.949 8 H 0.145 0.855 9 C -0.216 4.216 10 C 0.319 3.681 11 O -0.395 6.395 12 O -0.322 6.322 13 C -0.123 4.123 14 N -0.111 5.111 15 N -0.089 5.089 16 C 0.106 3.894 17 C -0.584 4.584 18 H 0.100 0.900 19 C -0.124 4.124 20 N -0.519 5.519 21 Si 0.698 3.302 22 H -0.195 1.195 23 H -0.204 1.204 24 H -0.188 1.188 25 H 0.106 0.894 26 H 0.089 0.911 27 H 0.114 0.886 28 H 0.245 0.755 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.273 0.727 33 H 0.196 0.804 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.452 17.866 8.462 19.822 hybrid contribution 0.516 0.213 0.101 0.567 sum 1.968 18.079 8.562 20.100 Atomic orbital electron populations 1.20606 0.86611 1.03728 1.04306 1.21465 0.94969 0.86358 0.93778 1.19538 0.93213 0.92079 1.29740 1.17234 0.84733 0.83721 0.73977 1.90703 1.16490 1.84287 1.51538 1.45588 1.11031 1.03379 1.77936 1.20204 0.95109 0.80854 0.98719 0.85487 1.22143 1.03331 1.02701 0.93451 1.23541 0.87789 0.81472 0.75307 1.90745 1.29047 1.74202 1.45526 1.84501 1.50591 1.20450 1.76651 1.23801 0.96487 0.92525 0.99533 1.77169 0.97990 1.12368 1.23540 1.48925 1.02793 1.07552 1.49671 1.20164 0.95743 0.73272 1.00244 1.21092 1.48097 0.99216 0.89997 0.90013 1.24792 0.94284 0.97401 0.95878 1.69860 1.45093 1.18263 1.18682 0.86902 0.79510 0.81052 0.82693 1.19486 1.20360 1.18769 0.89396 0.91050 0.88604 0.75507 0.90339 0.90011 0.91882 0.72749 0.80408 0.92677 0.93370 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.62 9.57 36.00 0.34 -1.27 16 2 C 0.17 3.37 7.01 -81.60 -0.57 2.80 16 3 C -0.33 -5.88 6.13 -105.06 -0.64 -6.53 16 4 C 0.61 9.67 7.78 -12.52 -0.10 9.57 16 5 O -0.55 -9.61 14.50 5.28 0.08 -9.54 16 6 N -0.72 -8.96 4.94 -56.01 -0.28 -9.24 16 7 C 0.16 1.59 3.09 -69.08 -0.21 1.38 16 8 H 0.13 1.33 7.58 -51.93 -0.39 0.94 16 9 C -0.16 -1.30 9.42 37.16 0.35 -0.95 16 10 C 0.48 4.55 7.69 36.00 0.28 4.82 16 11 O -0.51 -6.28 16.60 -18.75 -0.31 -6.59 16 12 O -0.51 -3.31 13.33 -39.27 -0.52 -3.83 16 13 C 0.06 1.11 11.50 -16.98 -0.20 0.92 16 14 N -0.29 -6.17 12.50 30.86 0.39 -5.78 16 15 N -0.31 -6.87 3.56 -57.77 -0.21 -7.07 16 16 C 0.22 5.19 5.04 -5.19 -0.03 5.17 16 17 C -0.55 -14.93 9.94 -34.44 -0.34 -15.27 16 18 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 19 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 20 N -0.88 -25.83 13.96 55.43 0.77 -25.06 16 21 Si 0.87 19.66 27.47 -169.99 -4.67 14.99 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 25 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 26 H 0.07 1.14 7.05 -51.93 -0.37 0.77 16 27 H 0.10 1.53 6.50 -51.93 -0.34 1.19 16 28 H 0.41 4.71 6.75 -40.82 -0.28 4.43 16 29 H 0.08 0.51 8.11 -51.93 -0.42 0.09 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.41 0.97 9.10 45.56 0.41 1.38 16 33 H 0.18 2.31 7.50 -52.49 -0.39 1.92 16 34 H 0.06 1.28 7.20 -51.93 -0.37 0.91 16 35 H 0.05 1.02 6.45 -51.93 -0.33 0.69 16 36 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 317.26 15.07 4.78 4.78 Total: -1.00 -33.72 317.26 -4.52 -38.24 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -3.34 Total: 6.32 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -1.22 Total: 2.77 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.68 Total: -47.15 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.76 Total: -19.96 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.67 Total: 14.99 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.72 -4.52 -38.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599982223.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.427 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds