Wall clock time and date at job start Tue Mar 31 2020 05:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38043 * 126.29185 * 2 1 4 4 C 1.47437 * 126.41547 * 359.97438 * 3 2 1 5 5 O 1.21602 * 119.99587 * 0.02562 * 4 3 2 6 6 N 1.34770 * 120.00229 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99955 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.47175 * 324.99716 * 7 6 4 9 9 C 1.53006 * 109.46998 * 84.99585 * 7 6 4 10 10 C 1.50697 * 109.46896 * 204.99514 * 7 6 4 11 11 O 1.20822 * 120.00115 * 359.97438 * 10 7 6 12 12 O 1.34234 * 119.99749 * 179.97438 * 10 7 6 13 13 C 1.41295 * 107.17361 * 180.26000 * 3 2 1 14 14 N 1.30449 * 108.01932 * 359.58481 * 13 3 2 15 15 N 1.34265 * 126.29588 * 180.02562 * 2 1 3 16 16 C 1.46504 * 125.74845 * 359.97438 * 15 2 1 17 17 C 1.50705 * 109.47006 * 89.99988 * 16 15 2 18 18 H 1.08000 * 119.99801 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00027 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99994 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99840 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47008 * 90.00274 * 21 19 17 23 23 H 1.48498 * 109.47418 * 209.99801 * 21 19 17 24 24 H 1.48499 * 109.47489 * 330.00553 * 21 19 17 25 25 H 1.09007 * 109.46817 * 89.98328 * 1 2 3 26 26 H 1.08994 * 109.46927 * 209.97523 * 1 2 3 27 27 H 1.08995 * 109.47234 * 329.98323 * 1 2 3 28 28 H 0.96997 * 119.99935 * 359.97438 * 6 4 3 29 29 H 1.09001 * 109.47002 * 179.97438 * 9 7 6 30 30 H 1.08993 * 109.46955 * 300.00226 * 9 7 6 31 31 H 1.09000 * 109.47050 * 60.00054 * 9 7 6 32 32 H 0.96696 * 116.99726 * 180.02562 * 12 10 7 33 33 H 1.07994 * 125.98806 * 179.73514 * 13 3 2 34 34 H 1.08998 * 109.46557 * 209.99321 * 16 15 2 35 35 H 1.08994 * 109.47338 * 329.99819 * 16 15 2 36 36 H 0.96998 * 120.00113 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1126 0.0000 4 6 1.8858 2.5204 -0.0005 5 8 0.6995 2.7878 -0.0006 6 7 2.7998 3.5107 -0.0010 7 6 2.3643 4.9095 -0.0009 8 1 1.4523 5.0061 -0.5901 9 6 2.0931 5.3591 1.4362 10 6 3.4442 5.7718 -0.6018 11 8 4.4724 5.2696 -0.9898 12 8 3.2639 7.0979 -0.7060 13 6 3.6590 0.6499 -0.0061 14 7 3.6341 -0.6544 -0.0005 15 7 2.3018 -1.0821 -0.0005 16 6 1.8501 -2.4758 -0.0006 17 6 1.6947 -2.9534 -1.4215 18 1 1.9104 -2.2855 -2.2423 19 6 1.2773 -4.2431 -1.6735 20 7 1.1412 -4.6597 -2.9135 21 14 0.9050 -5.3985 -0.2538 22 1 -0.5259 -5.2738 0.1238 23 1 1.1879 -6.7968 -0.6662 24 1 1.7566 -5.0436 0.9098 25 1 -0.3633 0.0003 -1.0277 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3633 0.8898 0.5141 28 1 3.7460 3.2974 -0.0006 29 1 1.7695 6.4000 1.4363 30 1 1.3121 4.7354 1.8708 31 1 3.0051 5.2625 2.0253 32 1 3.9845 7.6094 -1.0984 33 1 4.5448 1.2677 -0.0117 34 1 2.5850 -3.0958 0.5128 35 1 0.8917 -2.5472 0.5136 36 1 0.8472 -5.5668 -3.0908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599982223.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:05 Heat of formation + Delta-G solvation = -84.957413 kcal Electronic energy + Delta-G solvation = -21583.741655 eV Core-core repulsion = 18068.442888 eV Total energy + Delta-G solvation = -3515.298766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.40352 -41.56270 -40.03735 -37.25877 -36.15391 -35.76667 -34.04065 -32.93012 -31.94399 -29.52746 -28.18647 -26.17305 -24.99855 -23.72449 -22.18183 -21.20416 -20.64525 -19.28789 -19.18434 -18.78229 -17.59704 -17.15085 -16.64271 -16.48168 -16.38518 -15.98772 -15.57195 -15.20059 -14.91929 -14.48949 -14.43933 -14.14163 -13.81125 -13.69695 -13.66976 -13.24106 -13.14596 -13.01096 -12.67279 -12.57797 -12.55311 -12.15686 -11.85208 -11.75773 -11.59588 -10.92494 -10.90278 -10.32867 -10.28085 -9.49971 -8.43073 -6.55479 0.61693 1.06662 1.25678 1.34347 1.35627 1.45395 1.51673 1.76801 2.25028 2.40670 2.49726 2.89366 3.65487 3.70756 3.96795 3.98190 4.12516 4.16825 4.20775 4.39896 4.52097 4.70158 4.71651 4.74644 4.83205 5.06591 5.12307 5.17568 5.24358 5.34004 5.52391 5.59016 5.82737 6.20094 6.45103 6.47661 6.76346 6.90185 7.08530 7.22313 8.73514 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036804 B = 0.003532 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.602423 B = 7924.867790 C = 8126.734206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.153 3.847 3 C -0.331 4.331 4 C 0.616 3.384 5 O -0.569 6.569 6 N -0.712 5.712 7 C 0.151 3.849 8 H 0.125 0.875 9 C -0.151 4.151 10 C 0.490 3.510 11 O -0.539 6.539 12 O -0.499 6.499 13 C 0.080 3.920 14 N -0.333 5.333 15 N -0.338 5.338 16 C 0.233 3.767 17 C -0.555 4.555 18 H 0.025 0.975 19 C 0.023 3.977 20 N -0.936 5.936 21 Si 0.950 3.050 22 H -0.250 1.250 23 H -0.278 1.278 24 H -0.242 1.242 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.108 0.892 28 H 0.414 0.586 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.434 0.566 33 H 0.220 0.780 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.666 20.934 10.656 23.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.017 3.983 3 C -0.347 4.347 4 C 0.405 3.595 5 O -0.450 6.450 6 N -0.366 5.366 7 C 0.046 3.954 8 H 0.142 0.858 9 C -0.209 4.209 10 C 0.332 3.668 11 O -0.430 6.430 12 O -0.312 6.312 13 C -0.108 4.108 14 N -0.152 5.152 15 N -0.114 5.114 16 C 0.114 3.886 17 C -0.593 4.593 18 H 0.043 0.957 19 C -0.177 4.177 20 N -0.574 5.574 21 Si 0.771 3.229 22 H -0.174 1.174 23 H -0.204 1.204 24 H -0.165 1.165 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.126 0.874 28 H 0.251 0.749 29 H 0.118 0.882 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.297 0.703 33 H 0.237 0.763 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.448 19.408 10.602 22.162 hybrid contribution 0.581 0.004 -0.670 0.887 sum 2.029 19.412 9.932 21.900 Atomic orbital electron populations 1.20632 0.85293 1.04853 1.03967 1.22010 0.96116 0.86468 0.93703 1.19868 0.93234 0.92971 1.28590 1.16954 0.84826 0.83501 0.74173 1.90693 1.17274 1.84442 1.52567 1.45447 1.10756 1.04004 1.76433 1.20391 0.95237 0.79624 1.00198 0.85758 1.22096 1.03316 1.03615 0.91839 1.23248 0.86805 0.82229 0.74487 1.90747 1.30195 1.74976 1.47038 1.84447 1.51525 1.18982 1.76271 1.24465 0.97775 0.91668 0.96844 1.77106 0.98128 1.14320 1.25668 1.48794 1.03454 1.07410 1.51776 1.19916 0.96914 0.74440 0.97377 1.21194 1.48225 0.98882 0.90968 0.95667 1.25835 0.93592 0.99229 0.99090 1.70025 1.46587 1.19110 1.21648 0.85685 0.80539 0.77709 0.78969 1.17445 1.20363 1.16531 0.90351 0.89983 0.87366 0.74873 0.88204 0.91283 0.91102 0.70326 0.76341 0.92547 0.90845 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.04 9.57 71.24 0.68 -2.36 16 2 C 0.15 5.99 7.01 42.14 0.30 6.29 16 3 C -0.33 -11.56 6.13 -20.15 -0.12 -11.68 16 4 C 0.62 18.70 7.78 86.67 0.67 19.37 16 5 O -0.57 -19.27 14.50 -4.04 -0.06 -19.33 16 6 N -0.71 -16.36 4.94 -449.37 -2.22 -18.58 16 7 C 0.15 2.75 3.09 44.25 0.14 2.88 16 8 H 0.12 2.39 7.58 -2.39 -0.02 2.37 16 9 C -0.15 -2.09 9.42 71.98 0.68 -1.41 16 10 C 0.49 8.17 7.69 71.23 0.55 8.72 16 11 O -0.54 -12.31 16.60 21.98 0.36 -11.94 16 12 O -0.50 -4.95 13.33 -51.45 -0.69 -5.63 16 13 C 0.08 2.68 11.50 85.65 0.99 3.67 16 14 N -0.33 -14.11 12.50 -56.27 -0.70 -14.81 16 15 N -0.34 -14.90 3.56 -336.69 -1.20 -16.10 16 16 C 0.23 10.77 5.04 85.63 0.43 11.20 16 17 C -0.55 -31.35 9.94 25.60 0.25 -31.09 16 18 H 0.02 1.66 8.06 -2.91 -0.02 1.63 16 19 C 0.02 1.26 5.47 84.65 0.46 1.72 16 20 N -0.94 -56.55 13.96 21.45 0.30 -56.25 16 21 Si 0.95 40.10 27.47 68.60 1.88 41.99 16 22 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 23 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 24 H -0.24 -9.33 6.54 99.48 0.65 -8.68 16 25 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 26 H 0.08 2.55 7.05 -2.39 -0.02 2.53 16 27 H 0.11 3.36 6.50 -2.39 -0.02 3.35 16 28 H 0.41 8.68 6.75 -92.71 -0.63 8.05 16 29 H 0.10 0.98 8.11 -2.39 -0.02 0.96 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.43 0.66 9.10 -74.06 -0.67 -0.01 16 33 H 0.22 5.16 7.50 -2.91 -0.02 5.14 16 34 H 0.06 2.57 7.20 -2.39 -0.02 2.55 16 35 H 0.07 2.99 6.45 -2.39 -0.02 2.98 16 36 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -75.75 317.26 2.49 -73.26 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -0.21 Total: 20.10 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 5.02 Total: 7.30 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -3.82 Total: -105.75 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -0.38 Total: -36.90 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 1.88 Total: 41.99 kcal Total: -75.75 2.49 -73.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599982223.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.696 kcal (2) G-P(sol) polarization free energy of solvation -75.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds