Wall clock time and date at job start Tue Mar 31 2020 05:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38042 * 126.29203 * 2 1 4 4 C 1.47428 * 126.41696 * 359.97438 * 3 2 1 5 5 O 1.21601 * 119.99558 * 0.02562 * 4 3 2 6 6 N 1.34768 * 120.00123 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00056 * 179.97438 * 6 4 3 8 8 H 1.08998 * 109.46845 * 35.00845 * 7 6 4 9 9 C 1.52997 * 109.47473 * 275.00296 * 7 6 4 10 10 C 1.50706 * 109.47187 * 154.99900 * 7 6 4 11 11 O 1.20825 * 119.99819 * 0.02562 * 10 7 6 12 12 O 1.34226 * 119.99822 * 179.97438 * 10 7 6 13 13 C 1.41295 * 107.16827 * 180.26022 * 3 2 1 14 14 N 1.30443 * 108.02148 * 359.59066 * 13 3 2 15 15 N 1.34260 * 126.28761 * 180.02562 * 2 1 3 16 16 C 1.46502 * 125.75740 * 359.97438 * 15 2 1 17 17 C 1.50694 * 109.46956 * 89.99687 * 16 15 2 18 18 H 1.07998 * 120.00396 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99694 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99969 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99955 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46965 * 90.00128 * 21 19 17 23 23 H 1.48502 * 109.46679 * 209.99791 * 21 19 17 24 24 H 1.48502 * 109.47043 * 329.99990 * 21 19 17 25 25 H 1.09007 * 109.46829 * 89.97799 * 1 2 3 26 26 H 1.08994 * 109.47203 * 209.97647 * 1 2 3 27 27 H 1.08998 * 109.47157 * 329.97682 * 1 2 3 28 28 H 0.97001 * 120.00396 * 0.02562 * 6 4 3 29 29 H 1.09002 * 109.47153 * 59.99757 * 9 7 6 30 30 H 1.09001 * 109.46832 * 299.99948 * 9 7 6 31 31 H 1.09004 * 109.47261 * 179.97438 * 9 7 6 32 32 H 0.96702 * 116.99802 * 180.02562 * 12 10 7 33 33 H 1.08001 * 125.98868 * 179.73393 * 13 3 2 34 34 H 1.08997 * 109.46635 * 209.99928 * 16 15 2 35 35 H 1.08996 * 109.46805 * 330.00019 * 16 15 2 36 36 H 0.97001 * 120.00243 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5203 -0.0005 5 8 0.6997 2.7877 -0.0006 6 7 2.8000 3.5106 -0.0010 7 6 2.3645 4.9094 -0.0021 8 1 1.4527 5.0065 0.5872 9 6 2.0932 5.3580 -1.4394 10 6 3.4446 5.7722 0.5981 11 8 4.4727 5.2703 0.9864 12 8 3.2647 7.0984 0.7003 13 6 3.6591 0.6497 -0.0061 14 7 3.6340 -0.6544 -0.0007 15 7 2.3016 -1.0822 -0.0005 16 6 1.8500 -2.4759 -0.0006 17 6 1.6946 -2.9534 -1.4214 18 1 1.9110 -2.2858 -2.2422 19 6 1.2771 -4.2431 -1.6734 20 7 1.1419 -4.6601 -2.9133 21 14 0.9035 -5.3982 -0.2536 22 1 -0.5276 -5.2731 0.1228 23 1 1.1866 -6.7965 -0.6655 24 1 1.7544 -5.0430 0.9105 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3633 -0.8901 0.5134 27 1 -0.3633 0.8898 0.5142 28 1 3.7462 3.2973 -0.0013 29 1 1.3120 4.7339 -1.8735 30 1 3.0051 5.2609 -2.0286 31 1 1.7688 6.3986 -1.4401 32 1 3.9857 7.6104 1.0917 33 1 4.5449 1.2675 -0.0118 34 1 2.5849 -3.0959 0.5129 35 1 0.8916 -2.5472 0.5136 36 1 0.8479 -5.5673 -3.0906 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599982737.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:08 Heat of formation + Delta-G solvation = -84.807338 kcal Electronic energy + Delta-G solvation = -21583.398188 eV Core-core repulsion = 18068.105929 eV Total energy + Delta-G solvation = -3515.292259 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.40396 -41.55875 -40.03672 -37.25351 -36.15384 -35.76581 -34.03936 -32.93017 -31.94848 -29.52737 -28.18800 -26.17783 -24.99643 -23.72345 -22.18181 -21.20378 -20.64475 -19.28553 -19.18167 -18.77993 -17.59504 -17.15462 -16.63056 -16.52635 -16.29356 -16.04039 -15.50842 -15.32719 -14.86563 -14.46827 -14.41875 -14.14762 -13.78641 -13.75591 -13.66804 -13.26889 -13.12846 -13.01110 -12.67917 -12.57183 -12.55659 -12.15828 -11.85080 -11.75872 -11.59294 -10.92386 -10.90226 -10.33108 -10.27980 -9.49907 -8.42946 -6.55085 0.61608 1.06900 1.27018 1.34287 1.35252 1.44983 1.51085 1.76853 2.25003 2.38827 2.51658 2.89466 3.65436 3.70715 3.96249 3.98040 4.12348 4.16384 4.20706 4.39873 4.51927 4.69904 4.71211 4.73649 4.81599 5.06452 5.12238 5.17717 5.23241 5.33818 5.52674 5.59041 5.82936 6.20186 6.45077 6.47970 6.76349 6.90871 7.08826 7.22320 8.73531 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038653 B = 0.003511 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.210894 B = 7971.948621 C = 8172.243268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.153 3.847 3 C -0.332 4.332 4 C 0.616 3.384 5 O -0.569 6.569 6 N -0.712 5.712 7 C 0.153 3.847 8 H 0.128 0.872 9 C -0.153 4.153 10 C 0.491 3.509 11 O -0.538 6.538 12 O -0.499 6.499 13 C 0.080 3.920 14 N -0.333 5.333 15 N -0.338 5.338 16 C 0.233 3.767 17 C -0.554 4.554 18 H 0.027 0.973 19 C 0.024 3.976 20 N -0.935 5.935 21 Si 0.949 3.051 22 H -0.251 1.251 23 H -0.278 1.278 24 H -0.243 1.243 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.414 0.586 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.434 0.566 33 H 0.220 0.780 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.687 20.968 8.859 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.017 3.983 3 C -0.347 4.347 4 C 0.406 3.594 5 O -0.450 6.450 6 N -0.366 5.366 7 C 0.047 3.953 8 H 0.146 0.854 9 C -0.211 4.211 10 C 0.334 3.666 11 O -0.428 6.428 12 O -0.312 6.312 13 C -0.107 4.107 14 N -0.152 5.152 15 N -0.114 5.114 16 C 0.113 3.887 17 C -0.592 4.592 18 H 0.045 0.955 19 C -0.177 4.177 20 N -0.573 5.573 21 Si 0.770 3.230 22 H -0.175 1.175 23 H -0.203 1.203 24 H -0.166 1.166 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.125 0.875 28 H 0.251 0.749 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.119 0.881 32 H 0.297 0.703 33 H 0.237 0.763 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.469 19.440 8.690 21.345 hybrid contribution 0.573 -0.007 0.097 0.581 sum 2.042 19.433 8.787 21.425 Atomic orbital electron populations 1.20631 0.85293 1.04768 1.04047 1.22009 0.96117 0.86467 0.93697 1.19866 0.93234 0.92972 1.28605 1.16950 0.84824 0.83503 0.74170 1.90693 1.17275 1.84442 1.52564 1.45445 1.10759 1.04005 1.76435 1.20368 0.95425 0.79642 0.99907 0.85426 1.22110 1.03153 1.03661 0.92224 1.23190 0.86754 0.82220 0.74463 1.90742 1.30074 1.75002 1.47020 1.84448 1.51512 1.18940 1.76321 1.24466 0.97776 0.91666 0.96832 1.77106 0.98125 1.14327 1.25673 1.48793 1.03457 1.07404 1.51781 1.19913 0.96867 0.74440 0.97445 1.21186 1.48173 0.98885 0.90932 0.95509 1.25816 0.93620 0.99202 0.99030 1.70022 1.46597 1.19101 1.21588 0.85704 0.80517 0.77779 0.79021 1.17476 1.20341 1.16637 0.90164 0.90058 0.87484 0.74870 0.91639 0.91348 0.88067 0.70294 0.76331 0.92620 0.90919 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.04 9.57 71.24 0.68 -2.35 16 2 C 0.15 6.00 7.01 42.14 0.30 6.29 16 3 C -0.33 -11.56 6.13 -20.15 -0.12 -11.69 16 4 C 0.62 18.70 7.78 86.67 0.67 19.37 16 5 O -0.57 -19.27 14.50 -4.03 -0.06 -19.33 16 6 N -0.71 -16.35 4.94 -449.38 -2.22 -18.58 16 7 C 0.15 2.76 3.09 44.25 0.14 2.90 16 8 H 0.13 2.35 7.58 -2.39 -0.02 2.33 16 9 C -0.15 -2.36 9.42 71.98 0.68 -1.68 16 10 C 0.49 7.92 7.69 71.24 0.55 8.47 16 11 O -0.54 -11.79 16.60 21.97 0.36 -11.42 16 12 O -0.50 -4.70 13.33 -51.38 -0.68 -5.38 16 13 C 0.08 2.68 11.50 85.65 0.99 3.67 16 14 N -0.33 -14.11 12.50 -56.27 -0.70 -14.82 16 15 N -0.34 -14.90 3.56 -336.71 -1.20 -16.10 16 16 C 0.23 10.76 5.03 85.63 0.43 11.19 16 17 C -0.55 -31.15 9.94 25.60 0.25 -30.89 16 18 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16 19 C 0.02 1.30 5.47 84.66 0.46 1.77 16 20 N -0.94 -56.25 13.96 21.45 0.30 -55.95 16 21 Si 0.95 40.09 27.47 68.60 1.88 41.97 16 22 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 23 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.24 -9.42 6.54 99.48 0.65 -8.77 16 25 H 0.08 2.83 8.14 -2.38 -0.02 2.81 16 26 H 0.08 2.54 7.05 -2.39 -0.02 2.52 16 27 H 0.11 3.35 6.50 -2.39 -0.02 3.33 16 28 H 0.41 8.67 6.75 -92.71 -0.63 8.04 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.10 1.10 8.11 -2.38 -0.02 1.08 16 32 H 0.43 0.39 9.10 -74.06 -0.67 -0.29 16 33 H 0.22 5.15 7.50 -2.91 -0.02 5.13 16 34 H 0.06 2.55 7.20 -2.39 -0.02 2.53 16 35 H 0.07 2.97 6.44 -2.39 -0.02 2.96 16 36 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -75.08 317.26 2.49 -72.59 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -0.21 Total: 19.98 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 5.02 Total: 7.05 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -3.82 Total: -105.45 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -0.38 Total: -36.14 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.88 Total: 41.97 kcal Total: -75.08 2.49 -72.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599982737.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.220 kcal (2) G-P(sol) polarization free energy of solvation -75.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds