Wall clock time and date at job start Tue Mar 31 2020 05:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39642 * 126.06261 * 2 1 4 4 C 1.38516 * 105.35122 * 179.84918 * 3 2 1 5 5 C 1.47019 * 126.90155 * 180.10485 * 4 3 2 6 6 O 1.21673 * 120.00250 * 61.56999 * 5 4 3 7 7 N 1.34777 * 120.00046 * 241.57949 * 5 4 3 8 8 C 1.36834 * 119.99917 * 182.30596 * 7 5 4 9 9 H 1.08005 * 120.00385 * 225.63076 * 8 7 5 10 10 C 1.39056 * 120.00481 * 45.63104 * 8 7 5 11 11 N 1.31371 * 119.99435 * 26.82151 * 10 8 7 12 12 Si 1.86797 * 120.00343 * 206.82723 * 10 8 7 13 13 H 1.48499 * 109.47228 * 94.99200 * 12 10 8 14 14 H 1.48502 * 109.46843 * 214.99352 * 12 10 8 15 15 H 1.48498 * 109.46758 * 334.99011 * 12 10 8 16 16 C 1.46500 * 119.99932 * 2.30155 * 7 5 4 17 17 C 1.52999 * 109.46975 * 97.15396 * 16 7 5 18 18 C 1.50702 * 109.47356 * 184.88012 * 17 16 7 19 19 O 1.20819 * 119.99918 * 359.97438 * 18 17 16 20 20 O 1.34229 * 119.99907 * 179.97438 * 18 17 16 21 21 N 1.36652 * 106.20899 * 0.40542 * 4 3 2 22 22 C 1.46498 * 125.19931 * 179.73908 * 21 4 3 23 23 N 1.28445 * 109.60573 * 359.73470 * 21 4 3 24 24 H 1.09007 * 109.46870 * 269.71710 * 1 2 3 25 25 H 1.08997 * 109.47203 * 149.71605 * 1 2 3 26 26 H 1.09002 * 109.46790 * 29.70860 * 1 2 3 27 27 H 1.08004 * 127.32656 * 0.02562 * 3 2 1 28 28 H 0.97003 * 119.99829 * 184.97446 * 11 10 8 29 29 H 1.09002 * 109.47125 * 217.14907 * 16 7 5 30 30 H 1.08993 * 109.47182 * 337.15725 * 16 7 5 31 31 H 1.09003 * 109.47301 * 304.87663 * 17 16 7 32 32 H 1.09003 * 109.47708 * 64.87698 * 17 16 7 33 33 H 0.96706 * 116.99760 * 179.97438 * 20 18 17 34 34 H 1.09004 * 109.46522 * 278.76365 * 22 21 4 35 35 H 1.08996 * 109.47404 * 38.75710 * 22 21 4 36 36 H 1.08997 * 109.47365 * 158.76771 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3290 1.1288 0.0000 4 6 3.6247 0.6390 0.0035 5 6 4.8662 1.4264 0.0071 6 8 5.1087 2.1758 0.9345 7 7 5.7356 1.3185 -1.0170 8 6 6.9129 2.0154 -0.9914 9 1 7.2423 2.5517 -1.8691 10 6 7.6854 2.0331 0.1647 11 7 7.6181 1.0340 1.0150 12 14 8.8187 3.4776 0.5088 13 1 8.1228 4.4554 1.3834 14 1 10.0469 2.9923 1.1880 15 1 9.1874 4.1334 -0.7715 16 6 5.4203 0.4549 -2.1577 17 6 4.8295 1.2993 -3.2886 18 6 4.3946 0.3971 -4.4147 19 8 4.5425 -0.7985 -4.3224 20 8 3.8430 0.9218 -5.5201 21 7 3.5174 -0.7233 -0.0039 22 6 4.6446 -1.6591 -0.0089 23 7 2.2774 -1.0580 -0.0057 24 1 -0.3633 -0.0051 1.0277 25 1 -0.3633 -0.8874 -0.5182 26 1 -0.3633 0.8926 -0.5093 27 1 2.0203 2.1638 0.0004 28 1 8.1009 1.0787 1.8552 29 1 6.3304 -0.0334 -2.5062 30 1 4.6966 -0.3006 -1.8522 31 1 3.9693 1.8553 -2.9157 32 1 5.5832 1.9974 -3.6528 33 1 3.5802 0.3033 -6.2156 34 1 5.0242 -1.7652 -1.0252 35 1 5.4360 -1.2782 0.6366 36 1 4.3123 -2.6302 0.3580 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600077872.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:16 Heat of formation + Delta-G solvation = -36.864074 kcal Electronic energy + Delta-G solvation = -22947.699563 eV Core-core repulsion = 19434.486280 eV Total energy + Delta-G solvation = -3513.213283 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.94115 -40.08350 -38.26753 -36.08000 -34.82308 -33.59313 -32.48056 -30.40650 -29.98581 -29.34223 -25.56404 -25.10034 -24.11050 -21.99379 -20.88429 -20.17060 -18.89733 -17.98946 -17.19329 -16.66323 -16.03160 -15.75642 -15.67051 -15.02672 -14.68181 -14.14934 -13.85383 -13.34681 -13.25160 -12.97981 -12.94034 -12.64122 -12.57322 -12.07875 -11.98778 -11.87023 -11.64818 -11.46184 -11.37992 -10.96880 -10.81876 -10.59474 -10.41795 -10.28656 -10.10145 -8.91226 -8.65593 -8.32674 -8.28450 -7.50883 -6.39700 -4.11162 2.30702 2.37363 2.95439 3.12585 3.15916 3.26243 3.33713 3.37732 4.05530 4.19963 4.66721 4.95398 5.03746 5.26421 5.33745 5.38041 5.50241 5.56568 5.59509 5.72732 5.84811 5.88095 5.95915 6.01425 6.12481 6.17239 6.29514 6.43385 6.49603 6.61933 7.09233 7.33491 7.45166 8.00130 8.04701 8.64716 8.75174 8.87591 9.33801 9.93456 10.68490 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013381 B = 0.007783 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.964189 B = 3596.605137 C = 4861.133687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.017 3.983 3 C -0.212 4.212 4 C 0.013 3.987 5 C 0.543 3.457 6 O -0.525 6.525 7 N -0.434 5.434 8 C -0.359 4.359 9 H 0.085 0.915 10 C 0.085 3.915 11 N -0.831 5.831 12 Si 0.908 3.092 13 H -0.274 1.274 14 H -0.287 1.287 15 H -0.270 1.270 16 C 0.108 3.892 17 C -0.129 4.129 18 C 0.484 3.516 19 O -0.519 6.519 20 O -0.520 6.520 21 N -0.277 5.277 22 C 0.083 3.917 23 N -0.303 5.303 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.151 0.849 28 H 0.269 0.731 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.404 0.596 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.834 -2.422 -7.540 11.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.142 4.142 3 C -0.240 4.240 4 C -0.116 4.116 5 C 0.329 3.671 6 O -0.401 6.401 7 N -0.156 5.156 8 C -0.484 4.484 9 H 0.103 0.897 10 C -0.127 4.127 11 N -0.463 5.463 12 Si 0.734 3.266 13 H -0.200 1.200 14 H -0.213 1.213 15 H -0.195 1.195 16 C -0.017 4.017 17 C -0.168 4.168 18 C 0.326 3.674 19 O -0.407 6.407 20 O -0.332 6.332 21 N -0.065 5.065 22 C -0.057 4.057 23 N -0.135 5.135 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.169 0.831 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.262 0.738 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.271 -3.474 -6.562 10.392 hybrid contribution 0.441 0.983 -0.231 1.102 sum -6.830 -2.491 -6.792 9.949 Atomic orbital electron populations 1.19978 0.87244 1.02428 1.02134 1.21822 0.96527 0.89192 1.06613 1.21796 0.90041 0.99641 1.12538 1.22453 0.97656 0.84016 1.07490 1.16965 0.80453 0.83949 0.85777 1.90682 1.74571 1.39759 1.35130 1.43138 1.16011 1.40183 1.16226 1.18950 0.97147 1.30685 1.01653 0.89724 1.25234 0.95477 0.95381 0.96609 1.69888 1.39674 1.27447 1.09315 0.86266 0.78812 0.82625 0.78855 1.19991 1.21312 1.19478 1.21570 1.00591 0.92230 0.87281 1.21899 1.03648 0.99015 0.92211 1.23715 0.72984 0.88298 0.82377 1.90693 1.52335 1.17421 1.80279 1.84583 1.73823 1.45955 1.28803 1.45658 1.04690 1.04826 1.51335 1.22309 0.85993 0.92529 1.04914 1.72934 0.89883 1.27978 1.22746 0.91407 0.91593 0.91056 0.83136 0.92075 0.90102 0.91203 0.87835 0.87012 0.73787 0.89465 0.87723 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 10.45 36.01 0.38 -0.38 16 2 C 0.02 0.29 7.22 -82.47 -0.60 -0.30 16 3 C -0.21 -4.10 10.98 -38.96 -0.43 -4.53 16 4 C 0.01 0.29 5.42 -82.06 -0.44 -0.16 16 5 C 0.54 13.54 6.45 -12.70 -0.08 13.46 16 6 O -0.53 -15.23 15.44 5.21 0.08 -15.15 16 7 N -0.43 -10.20 2.49 -116.18 -0.29 -10.49 16 8 C -0.36 -9.13 9.05 -15.02 -0.14 -9.26 16 9 H 0.09 2.04 7.96 -52.48 -0.42 1.63 16 10 C 0.09 2.25 4.11 -17.45 -0.07 2.18 16 11 N -0.83 -22.85 12.61 55.50 0.70 -22.15 16 12 Si 0.91 20.84 29.63 -169.99 -5.04 15.80 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 16 C 0.11 2.10 4.03 -4.04 -0.02 2.08 16 17 C -0.13 -2.09 6.08 -27.88 -0.17 -2.26 16 18 C 0.48 7.31 8.33 36.01 0.30 7.61 16 19 O -0.52 -9.16 16.68 -18.74 -0.31 -9.47 16 20 O -0.52 -6.14 13.42 -39.25 -0.53 -6.67 16 21 N -0.28 -5.55 3.16 -63.89 -0.20 -5.75 16 22 C 0.08 1.45 10.09 59.85 0.60 2.06 16 23 N -0.30 -5.85 11.90 33.63 0.40 -5.45 16 24 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.15 2.63 8.06 -52.48 -0.42 2.20 16 28 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 30 H 0.07 1.36 3.40 -51.93 -0.18 1.19 16 31 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 32 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 33 H 0.40 2.91 9.10 45.56 0.41 3.32 16 34 H 0.09 1.46 6.23 -51.93 -0.32 1.14 16 35 H 0.10 2.05 8.03 -51.93 -0.42 1.63 16 36 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 316.91 15.07 4.78 4.78 Total: -1.00 -33.71 316.91 -4.51 -38.22 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -3.43 Total: 5.83 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -0.66 Total: 10.50 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.61 Total: -43.84 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.76 Total: -31.29 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.04 Total: 15.80 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.71 -4.51 -38.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600077872.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.360 kcal (2) G-P(sol) polarization free energy of solvation -33.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds