Wall clock time and date at job start Tue Mar 31 2020 05:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35314 * 126.12633 * 2 1 4 4 C 1.39874 * 107.91721 * 180.14440 * 3 2 1 5 5 C 1.50703 * 125.89493 * 179.86403 * 4 3 2 6 6 C 1.52999 * 109.46913 * 124.72408 * 5 4 3 7 7 C 1.50703 * 109.46913 * 179.97438 * 6 5 4 8 8 O 1.21287 * 120.00250 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99709 * 179.97438 * 7 6 5 10 10 C 1.37089 * 120.00003 * 179.97438 * 9 7 6 11 11 H 1.08007 * 120.00343 * 16.50987 * 10 9 7 12 12 C 1.38955 * 120.00377 * 196.51383 * 10 9 7 13 13 N 1.31415 * 119.99620 * 21.64243 * 12 10 9 14 14 Si 1.86792 * 120.00165 * 201.63923 * 12 10 9 15 15 H 1.48506 * 109.47357 * 60.00090 * 14 12 10 16 16 H 1.48501 * 109.47028 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47468 * 299.99664 * 14 12 10 18 18 C 1.46499 * 120.00008 * 359.97438 * 9 7 6 19 19 C 1.50696 * 109.47282 * 84.06965 * 18 9 7 20 20 O 1.20830 * 120.00367 * 359.97438 * 19 18 9 21 21 O 1.34235 * 120.00277 * 180.02562 * 19 18 9 22 22 N 1.30840 * 108.20159 * 359.60392 * 4 3 2 23 23 N 1.34946 * 126.12584 * 179.70559 * 2 1 3 24 24 H 0.97008 * 126.03780 * 0.02562 * 23 2 1 25 25 H 1.09001 * 109.47046 * 270.26665 * 1 2 3 26 26 H 1.09005 * 109.47299 * 30.26382 * 1 2 3 27 27 H 1.08999 * 109.47503 * 150.26654 * 1 2 3 28 28 H 1.07998 * 126.04426 * 0.03129 * 3 2 1 29 29 H 1.09000 * 109.47252 * 4.71885 * 5 4 3 30 30 H 1.09006 * 109.46915 * 244.71950 * 5 4 3 31 31 H 1.08991 * 109.47405 * 59.99530 * 6 5 4 32 32 H 1.09006 * 109.46956 * 299.99517 * 6 5 4 33 33 H 0.97002 * 119.99560 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.47267 * 204.06575 * 18 9 7 35 35 H 1.08998 * 109.47567 * 324.06842 * 18 9 7 36 36 H 0.96703 * 116.99983 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6334 0.6559 -0.0034 5 6 4.8543 1.5395 -0.0074 6 6 5.7524 1.1737 1.1760 7 6 6.9735 2.0569 1.1715 8 8 7.1121 2.8959 0.3067 9 7 7.9117 1.9144 2.1286 10 6 9.0228 2.7174 2.1244 11 1 9.0318 3.6238 1.5372 12 6 10.1375 2.3652 2.8754 13 7 10.3177 1.1147 3.2372 14 14 11.3800 3.6690 3.3707 15 1 10.7073 4.7072 4.1924 16 1 12.4682 3.0406 4.1620 17 1 11.9520 4.2961 2.1522 18 6 7.7441 0.9013 3.1735 19 6 8.2371 -0.4294 2.6668 20 8 8.6824 -0.5224 1.5474 21 8 8.1807 -1.5119 3.4585 22 7 3.6333 -0.6525 0.0033 23 7 2.3026 -1.0900 0.0056 24 1 2.0054 -2.0134 0.0100 25 1 -0.3633 0.0048 1.0277 26 1 -0.3634 0.8876 -0.5179 27 1 -0.3634 -0.8923 -0.5097 28 1 1.9741 2.1211 0.0005 29 1 4.5484 2.5822 0.0772 30 1 5.4033 1.3962 -0.9381 31 1 6.0583 0.1310 1.0914 32 1 5.2034 1.3170 2.1067 33 1 11.0957 0.8689 3.7618 34 1 8.3176 1.1897 4.0545 35 1 6.6893 0.8217 3.4367 36 1 8.5084 -2.3435 3.0893 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600189302.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:53 Heat of formation + Delta-G solvation = -50.432369 kcal Electronic energy + Delta-G solvation = -22037.426550 eV Core-core repulsion = 18523.624902 eV Total energy + Delta-G solvation = -3513.801648 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.16608 -39.38749 -38.11287 -35.27317 -34.54440 -33.83699 -31.92152 -31.62514 -30.01885 -27.63140 -27.01920 -25.64940 -23.60879 -21.06587 -20.54482 -19.54677 -18.58932 -17.34058 -17.11650 -16.83909 -16.11923 -15.64751 -15.10165 -14.58272 -14.43252 -14.34066 -14.01760 -13.81456 -13.40411 -13.09640 -12.97354 -12.61465 -12.40598 -11.91804 -11.81684 -11.61390 -11.45540 -11.31665 -10.89236 -10.82683 -10.44698 -10.35154 -10.24167 -10.20228 -9.58117 -9.15848 -8.99045 -8.56339 -8.43418 -7.86433 -6.40509 -3.84236 1.89911 2.86527 2.90745 3.19871 3.26670 3.30734 3.51832 3.70730 4.12470 4.29926 4.53729 4.76524 4.83842 4.94964 5.10788 5.21592 5.40859 5.56139 5.62859 5.70507 5.81175 5.89605 5.97087 6.13756 6.20189 6.47657 6.53878 6.57547 6.62935 6.79879 7.32523 7.54334 7.59393 7.81265 8.03536 8.41589 9.08509 9.13722 9.36164 9.90160 10.68544 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026798 B = 0.004362 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.585014 B = 6417.151251 C = 7136.582666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.077 3.923 3 C -0.267 4.267 4 C 0.090 3.910 5 C -0.021 4.021 6 C -0.127 4.127 7 C 0.463 3.537 8 O -0.577 6.577 9 N -0.434 5.434 10 C -0.306 4.306 11 H 0.108 0.892 12 C 0.028 3.972 13 N -0.883 5.883 14 Si 0.929 3.071 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.273 1.273 18 C 0.147 3.853 19 C 0.489 3.511 20 O -0.502 6.502 21 O -0.535 6.535 22 N -0.290 5.290 23 N -0.481 5.481 24 H 0.434 0.566 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.147 0.853 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.270 0.730 34 H 0.127 0.873 35 H 0.077 0.923 36 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.468 -4.835 0.699 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.052 4.052 3 C -0.296 4.296 4 C -0.077 4.077 5 C -0.060 4.060 6 C -0.168 4.168 7 C 0.252 3.748 8 O -0.460 6.460 9 N -0.153 5.153 10 C -0.433 4.433 11 H 0.125 0.875 12 C -0.174 4.174 13 N -0.523 5.523 14 Si 0.756 3.244 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.198 1.198 18 C 0.020 3.980 19 C 0.329 3.671 20 O -0.387 6.387 21 O -0.346 6.346 22 N -0.113 5.113 23 N -0.190 5.190 24 H 0.277 0.723 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.165 0.835 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.145 0.855 35 H 0.095 0.905 36 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -15.537 -5.173 0.216 16.377 hybrid contribution 0.433 -0.146 0.129 0.475 sum -15.104 -5.319 0.345 16.017 Atomic orbital electron populations 1.20425 0.87499 1.03695 1.03263 1.21081 0.94413 0.87998 1.01672 1.21212 0.91725 0.99149 1.17533 1.22545 0.95969 0.91519 0.97677 1.19765 0.89745 0.96873 0.99654 1.21529 0.95516 1.00847 0.98911 1.20047 0.85959 0.86694 0.82070 1.90516 1.79953 1.38314 1.37210 1.43438 1.19404 1.29914 1.22581 1.19683 0.91525 1.03494 1.28569 0.87458 1.25226 0.97637 0.96393 0.98156 1.69812 1.29641 1.15341 1.37495 0.85943 0.79247 0.80348 0.78862 1.19865 1.21099 1.19846 1.20658 0.99494 0.83599 0.94261 1.23847 0.74830 0.85220 0.83186 1.90617 1.41752 1.84709 1.21671 1.84522 1.79529 1.20362 1.50236 1.77400 0.95543 1.12896 1.25420 1.46329 1.04330 1.07973 1.60346 0.72301 0.90273 0.89655 0.91342 0.83548 0.89242 0.89487 0.89883 0.90451 0.91920 0.85483 0.90491 0.75236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 10.43 36.01 0.38 -0.19 16 2 C 0.08 0.84 7.21 -82.27 -0.59 0.25 16 3 C -0.27 -3.50 10.64 -40.01 -0.43 -3.93 16 4 C 0.09 1.44 6.49 -82.40 -0.53 0.90 16 5 C -0.02 -0.37 5.08 -27.88 -0.14 -0.51 16 6 C -0.13 -2.49 4.27 -27.88 -0.12 -2.61 16 7 C 0.46 11.46 7.41 -10.98 -0.08 11.37 16 8 O -0.58 -15.92 15.62 5.55 0.09 -15.83 16 9 N -0.43 -11.13 2.18 -116.10 -0.25 -11.38 16 10 C -0.31 -8.51 9.34 -14.94 -0.14 -8.65 16 11 H 0.11 3.11 7.37 -52.48 -0.39 2.73 16 12 C 0.03 0.74 4.87 -17.46 -0.09 0.66 16 13 N -0.88 -23.56 9.28 55.50 0.52 -23.05 16 14 Si 0.93 20.72 29.60 -169.99 -5.03 15.69 16 15 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 16 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 C 0.15 3.27 4.97 -5.20 -0.03 3.24 16 19 C 0.49 11.23 5.86 36.00 0.21 11.44 16 20 O -0.50 -13.53 16.79 -18.75 -0.31 -13.85 16 21 O -0.54 -10.04 13.42 -39.27 -0.53 -10.57 16 22 N -0.29 -4.72 12.67 33.67 0.43 -4.30 16 23 N -0.48 -5.78 7.36 33.48 0.25 -5.54 16 24 H 0.43 3.70 8.96 -182.61 -1.64 2.06 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.15 1.63 8.06 -52.49 -0.42 1.20 16 29 H 0.09 1.49 8.08 -51.93 -0.42 1.07 16 30 H 0.09 1.66 8.10 -51.93 -0.42 1.24 16 31 H 0.08 1.72 7.52 -51.93 -0.39 1.33 16 32 H 0.08 1.33 7.41 -51.93 -0.39 0.95 16 33 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.13 2.92 6.37 -51.93 -0.33 2.59 16 35 H 0.08 1.41 6.69 -51.93 -0.35 1.06 16 36 H 0.39 5.73 9.10 45.56 0.41 6.15 16 LS Contribution 315.21 15.07 4.75 4.75 Total: -1.00 -36.00 315.21 -6.39 -42.39 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -4.73 Total: 9.70 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -1.56 Total: 11.97 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.94 Total: -44.26 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -0.76 Total: -40.25 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -36.00 -6.39 -42.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600189302.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.041 kcal (2) G-P(sol) polarization free energy of solvation -36.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds