Wall clock time and date at job start Tue Mar 31 2020 05:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35314 * 126.12633 * 2 1 4 4 C 1.39874 * 107.91721 * 180.14440 * 3 2 1 5 5 C 1.50703 * 125.89493 * 179.86403 * 4 3 2 6 6 C 1.52999 * 109.46913 * 124.72408 * 5 4 3 7 7 C 1.50703 * 109.46913 * 179.97438 * 6 5 4 8 8 O 1.21287 * 120.00250 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99709 * 179.97438 * 7 6 5 10 10 C 1.37089 * 120.00003 * 179.97438 * 9 7 6 11 11 H 1.08007 * 120.00343 * 16.50987 * 10 9 7 12 12 C 1.38955 * 120.00377 * 196.51383 * 10 9 7 13 13 N 1.31415 * 119.99620 * 21.64243 * 12 10 9 14 14 Si 1.86792 * 120.00165 * 201.63923 * 12 10 9 15 15 H 1.48506 * 109.47357 * 60.00090 * 14 12 10 16 16 H 1.48501 * 109.47028 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47468 * 299.99664 * 14 12 10 18 18 C 1.46499 * 120.00008 * 359.97438 * 9 7 6 19 19 C 1.50696 * 109.47282 * 84.06965 * 18 9 7 20 20 O 1.20830 * 120.00367 * 359.97438 * 19 18 9 21 21 O 1.34235 * 120.00277 * 180.02562 * 19 18 9 22 22 N 1.30840 * 108.20159 * 359.60392 * 4 3 2 23 23 N 1.34946 * 126.12584 * 179.70559 * 2 1 3 24 24 H 0.97008 * 126.03780 * 0.02562 * 23 2 1 25 25 H 1.09001 * 109.47046 * 270.26665 * 1 2 3 26 26 H 1.09005 * 109.47299 * 30.26382 * 1 2 3 27 27 H 1.08999 * 109.47503 * 150.26654 * 1 2 3 28 28 H 1.07998 * 126.04426 * 0.03129 * 3 2 1 29 29 H 1.09000 * 109.47252 * 4.71885 * 5 4 3 30 30 H 1.09006 * 109.46915 * 244.71950 * 5 4 3 31 31 H 1.08991 * 109.47405 * 59.99530 * 6 5 4 32 32 H 1.09006 * 109.46956 * 299.99517 * 6 5 4 33 33 H 0.97002 * 119.99560 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.47267 * 204.06575 * 18 9 7 35 35 H 1.08998 * 109.47567 * 324.06842 * 18 9 7 36 36 H 0.96703 * 116.99983 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6334 0.6559 -0.0034 5 6 4.8543 1.5395 -0.0074 6 6 5.7524 1.1737 1.1760 7 6 6.9735 2.0569 1.1715 8 8 7.1121 2.8959 0.3067 9 7 7.9117 1.9144 2.1286 10 6 9.0228 2.7174 2.1244 11 1 9.0318 3.6238 1.5372 12 6 10.1375 2.3652 2.8754 13 7 10.3177 1.1147 3.2372 14 14 11.3800 3.6690 3.3707 15 1 10.7073 4.7072 4.1924 16 1 12.4682 3.0406 4.1620 17 1 11.9520 4.2961 2.1522 18 6 7.7441 0.9013 3.1735 19 6 8.2371 -0.4294 2.6668 20 8 8.6824 -0.5224 1.5474 21 8 8.1807 -1.5119 3.4585 22 7 3.6333 -0.6525 0.0033 23 7 2.3026 -1.0900 0.0056 24 1 2.0054 -2.0134 0.0100 25 1 -0.3633 0.0048 1.0277 26 1 -0.3634 0.8876 -0.5179 27 1 -0.3634 -0.8923 -0.5097 28 1 1.9741 2.1211 0.0005 29 1 4.5484 2.5822 0.0772 30 1 5.4033 1.3962 -0.9381 31 1 6.0583 0.1310 1.0914 32 1 5.2034 1.3170 2.1067 33 1 11.0957 0.8689 3.7618 34 1 8.3176 1.1897 4.0545 35 1 6.6893 0.8217 3.4367 36 1 8.5084 -2.3435 3.0893 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600189302.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:52 Heat of formation + Delta-G solvation = -76.999654 kcal Electronic energy + Delta-G solvation = -22038.578594 eV Core-core repulsion = 18523.624902 eV Total energy + Delta-G solvation = -3514.953692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.18517 -41.22608 -39.97145 -37.08666 -36.39463 -35.21031 -33.74568 -32.70489 -31.28537 -29.48694 -27.79916 -27.41212 -25.31168 -22.83867 -21.50955 -20.92397 -20.23650 -19.02261 -18.69597 -18.30101 -17.93949 -17.42925 -16.59462 -16.25802 -16.07950 -15.93921 -15.69341 -14.76925 -14.61779 -14.44406 -14.19517 -13.72127 -13.61351 -13.53451 -13.35625 -13.31703 -12.97001 -12.73427 -12.61768 -12.37674 -12.26808 -12.12861 -12.06909 -11.52096 -11.40047 -10.95043 -10.49127 -10.18006 -9.86375 -9.51894 -8.42354 -5.94077 0.93759 1.39634 1.44038 1.55109 1.70383 1.78037 1.87766 2.01735 2.28427 2.54067 2.95375 3.12011 3.63112 3.81059 3.97123 4.14906 4.17892 4.30646 4.39055 4.63656 4.68509 4.74067 4.81394 4.86932 4.92924 5.01846 5.12329 5.16854 5.31647 5.47025 5.69540 5.93892 6.02188 6.39876 6.51274 6.77125 7.11278 7.30306 7.45152 7.93726 8.64515 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026798 B = 0.004362 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.585014 B = 6417.151251 C = 7136.582666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.097 3.903 3 C -0.289 4.289 4 C 0.073 3.927 5 C -0.013 4.013 6 C -0.109 4.109 7 C 0.450 3.550 8 O -0.618 6.618 9 N -0.445 5.445 10 C -0.344 4.344 11 H 0.082 0.918 12 C -0.002 4.002 13 N -0.895 5.895 14 Si 0.994 3.006 15 H -0.260 1.260 16 H -0.274 1.274 17 H -0.282 1.282 18 C 0.144 3.856 19 C 0.496 3.504 20 O -0.550 6.550 21 O -0.519 6.519 22 N -0.333 5.333 23 N -0.471 5.471 24 H 0.448 0.552 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.163 0.837 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.274 0.726 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.450 -5.559 2.097 19.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.032 4.032 3 C -0.318 4.318 4 C -0.093 4.093 5 C -0.052 4.052 6 C -0.150 4.150 7 C 0.241 3.759 8 O -0.504 6.504 9 N -0.164 5.164 10 C -0.472 4.472 11 H 0.099 0.901 12 C -0.203 4.203 13 N -0.534 5.534 14 Si 0.818 3.182 15 H -0.185 1.185 16 H -0.199 1.199 17 H -0.208 1.208 18 C 0.018 3.982 19 C 0.338 3.662 20 O -0.439 6.439 21 O -0.331 6.331 22 N -0.158 5.158 23 N -0.182 5.182 24 H 0.294 0.706 25 H 0.114 0.886 26 H 0.117 0.883 27 H 0.107 0.893 28 H 0.180 0.820 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.124 0.876 33 H 0.084 0.916 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -17.534 -5.959 1.659 18.593 hybrid contribution 0.996 -0.046 -0.297 1.040 sum -16.538 -6.005 1.362 17.647 Atomic orbital electron populations 1.20615 0.83700 1.05425 1.04827 1.21758 0.96407 0.86658 0.98418 1.21476 0.90705 1.00826 1.18767 1.22299 0.96277 0.91538 0.99175 1.19571 0.90221 0.97847 0.97599 1.21397 0.93681 0.98691 1.01198 1.20931 0.87115 0.86596 0.81253 1.90471 1.81061 1.40162 1.38700 1.43613 1.18951 1.30390 1.23463 1.19650 0.93409 1.03894 1.30214 0.90055 1.25998 0.98820 0.98311 0.97152 1.69896 1.30076 1.16399 1.37002 0.84989 0.77022 0.78034 0.78196 1.18470 1.19883 1.20760 1.20828 1.01889 0.82617 0.92876 1.23881 0.73618 0.86140 0.82522 1.90607 1.43990 1.85602 1.23686 1.84446 1.78983 1.20638 1.49029 1.77289 0.98190 1.13189 1.27093 1.46346 1.03218 1.09231 1.59370 0.70561 0.88576 0.88304 0.89276 0.81965 0.88676 0.92056 0.90860 0.87594 0.91578 0.86088 0.86358 0.72812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.73 10.43 71.24 0.74 0.01 16 2 C 0.10 1.86 7.21 41.40 0.30 2.15 16 3 C -0.29 -7.11 10.64 21.99 0.23 -6.88 16 4 C 0.07 2.30 6.49 43.10 0.28 2.58 16 5 C -0.01 -0.46 5.08 29.85 0.15 -0.31 16 6 C -0.11 -4.32 4.27 29.85 0.13 -4.19 16 7 C 0.45 22.99 7.41 87.66 0.65 23.64 16 8 O -0.62 -35.78 15.62 -3.05 -0.05 -35.83 16 9 N -0.45 -23.33 2.18 -639.61 -1.39 -24.73 16 10 C -0.34 -19.76 9.34 84.04 0.79 -18.97 16 11 H 0.08 4.97 7.37 -2.91 -0.02 4.95 16 12 C 0.00 -0.08 4.87 84.93 0.41 0.33 16 13 N -0.89 -47.57 9.28 21.67 0.20 -47.37 16 14 Si 0.99 42.56 29.60 68.60 2.03 44.59 16 15 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 16 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 18 C 0.14 6.33 4.97 85.63 0.43 6.76 16 19 C 0.50 22.55 5.86 71.23 0.42 22.97 16 20 O -0.55 -30.03 16.79 21.95 0.37 -29.66 16 21 O -0.52 -18.52 13.42 -51.47 -0.69 -19.21 16 22 N -0.33 -10.70 12.67 -47.38 -0.60 -11.30 16 23 N -0.47 -10.39 7.36 -48.00 -0.35 -10.74 16 24 H 0.45 6.61 8.96 -213.32 -1.91 4.70 16 25 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 27 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 29 H 0.09 3.26 8.08 -2.39 -0.02 3.24 16 30 H 0.06 2.49 8.10 -2.38 -0.02 2.47 16 31 H 0.07 3.07 7.52 -2.39 -0.02 3.05 16 32 H 0.11 3.53 7.41 -2.38 -0.02 3.51 16 33 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 34 H 0.12 5.49 6.37 -2.39 -0.02 5.47 16 35 H 0.12 4.13 6.69 -2.39 -0.02 4.11 16 36 H 0.41 11.27 9.10 -74.06 -0.67 10.60 16 Total: -1.00 -80.71 315.21 2.60 -78.11 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: -1.44 Total: 28.04 kcal Atomic # 6 Polarization: 23.56 SS G_CDS: 4.53 Total: 28.09 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -2.15 Total: -94.13 kcal Atomic # 8 Polarization: -84.34 SS G_CDS: -0.37 Total: -84.71 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -80.71 2.60 -78.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600189302.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.113 kcal (2) G-P(sol) polarization free energy of solvation -80.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds