Wall clock time and date at job start Tue Mar 31 2020 05:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.46850 * 180.02562 * 8 6 5 10 10 C 1.50706 * 109.46815 * 180.02562 * 9 8 6 11 11 O 1.20821 * 120.00157 * 359.97438 * 10 9 8 12 12 O 1.34224 * 120.00033 * 180.02562 * 10 9 8 13 13 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 14 14 C 1.46491 * 126.04623 * 179.87688 * 13 4 3 15 15 C 1.50702 * 109.46957 * 269.71277 * 14 13 4 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 25 25 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 26 26 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 27 27 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 28 28 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 29 29 H 1.08994 * 109.47320 * 300.00736 * 8 6 5 30 30 H 1.09002 * 109.46478 * 60.00611 * 8 6 5 31 31 H 1.09005 * 109.47406 * 299.99990 * 9 8 6 32 32 H 1.08990 * 109.47361 * 60.00544 * 9 8 6 33 33 H 0.96701 * 117.00312 * 179.97438 * 12 10 9 34 34 H 1.09004 * 109.47166 * 149.71543 * 14 13 4 35 35 H 1.08994 * 109.47507 * 29.71250 * 14 13 4 36 36 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 6 5.4088 5.2178 0.0307 10 6 6.6315 6.0987 0.0386 11 8 7.7333 5.6030 0.0411 12 8 6.4965 7.4342 0.0439 13 7 3.6093 -0.6405 0.0013 14 6 4.7870 -1.5116 0.0026 15 6 5.1921 -1.8109 -1.4178 16 1 4.6288 -1.3935 -2.2393 17 6 6.2856 -2.6124 -1.6685 18 7 6.9718 -3.1203 -0.6681 19 14 6.7923 -2.9770 -3.4290 20 1 7.7551 -1.9451 -3.8909 21 1 7.4328 -4.3153 -3.4927 22 1 5.5920 -2.9606 -4.3032 23 7 2.2731 -1.0608 0.0005 24 1 -0.3634 0.0003 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8901 -0.5136 27 1 1.9901 2.1596 -0.0009 28 1 5.6359 1.1294 0.0155 29 1 6.4297 3.5415 0.9182 30 1 6.4372 3.5481 -0.8617 31 1 4.8172 5.4259 -0.8609 32 1 4.8102 5.4187 0.9191 33 1 7.3096 7.9577 0.0493 34 1 4.5494 -2.4431 0.5166 35 1 5.6079 -1.0120 0.5169 36 1 7.7409 -3.6845 -0.8445 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600255045.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:11 Heat of formation + Delta-G solvation = -61.479882 kcal Electronic energy + Delta-G solvation = -21399.516506 eV Core-core repulsion = 17885.235801 eV Total energy + Delta-G solvation = -3514.280704 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.95706 -40.48325 -39.21084 -36.46009 -34.79417 -33.78387 -33.28468 -32.07636 -29.23600 -28.47685 -26.34712 -26.00480 -22.95416 -22.08151 -20.73673 -19.72300 -19.31928 -18.35741 -17.24355 -16.91771 -16.64780 -16.52239 -15.85001 -15.42267 -14.89727 -14.41022 -14.21144 -13.88148 -13.39492 -13.38378 -12.87936 -12.78157 -12.52053 -12.31324 -12.06763 -11.82600 -11.79034 -11.58203 -11.51730 -11.09016 -10.89868 -10.86224 -10.41886 -10.34699 -9.96337 -9.82284 -9.53973 -8.73124 -7.93800 -7.46746 -6.34423 -4.42985 1.93754 2.19773 2.51205 3.00179 3.10135 3.15704 3.23357 3.29199 3.58009 3.80012 4.23908 4.31403 4.73769 4.76467 4.99130 5.08139 5.31454 5.35159 5.49221 5.62095 5.63116 6.01530 6.15052 6.16562 6.21737 6.24249 6.40267 6.64164 6.82121 7.02553 7.49092 7.56206 7.59775 7.61176 7.78379 7.87066 8.24816 8.60564 8.69456 9.24794 10.72762 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011933 B = 0.004991 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.956399 B = 5608.874099 C = 7513.290433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.295 4.295 4 C 0.300 3.700 5 N -0.638 5.638 6 C 0.522 3.478 7 O -0.518 6.518 8 C -0.127 4.127 9 C -0.098 4.098 10 C 0.481 3.519 11 O -0.516 6.516 12 O -0.517 6.517 13 N -0.344 5.344 14 C 0.256 3.744 15 C -0.541 4.541 16 H 0.065 0.935 17 C 0.067 3.933 18 N -0.890 5.890 19 Si 0.906 3.094 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 N -0.285 5.285 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.162 0.838 28 H 0.418 0.582 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.410 0.590 34 H 0.057 0.943 35 H 0.044 0.956 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.021 16.423 2.456 16.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.327 4.327 4 C 0.077 3.923 5 N -0.285 5.285 6 C 0.308 3.692 7 O -0.393 6.393 8 C -0.168 4.168 9 C -0.136 4.136 10 C 0.323 3.677 11 O -0.404 6.404 12 O -0.329 6.329 13 N -0.129 5.129 14 C 0.138 3.862 15 C -0.579 4.579 16 H 0.083 0.917 17 C -0.137 4.137 18 N -0.527 5.527 19 Si 0.733 3.267 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.196 1.196 23 N -0.111 5.111 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.179 0.821 28 H 0.255 0.745 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.269 0.731 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.503 14.949 2.506 15.362 hybrid contribution 1.681 0.565 -0.947 2.011 sum -0.822 15.513 1.558 15.613 Atomic orbital electron populations 1.20018 0.87586 1.02452 1.02034 1.22037 0.96519 0.91056 1.01873 1.21269 0.89033 1.00442 1.21935 1.17949 0.88025 0.83385 1.02925 1.42772 1.08435 1.05614 1.71666 1.20408 0.91161 0.81474 0.76114 1.90650 1.26846 1.73758 1.48026 1.21400 0.96175 0.92239 1.06937 1.21026 0.93715 0.91051 1.07770 1.23491 0.91405 0.81335 0.71456 1.90758 1.28644 1.75330 1.45692 1.84537 1.42904 1.19833 1.85596 1.49361 1.06543 1.02200 1.54811 1.19630 0.77807 0.89777 0.98955 1.21336 1.13145 1.32143 0.91325 0.91700 1.24936 0.95681 0.94851 0.98196 1.69916 1.19013 1.32728 1.31065 0.86347 0.78821 0.77877 0.83636 1.20306 1.20777 1.19617 1.77361 0.86151 1.21841 1.25709 0.91376 0.91130 0.91511 0.82093 0.74488 0.87349 0.87206 0.86474 0.86501 0.73090 0.92540 0.93784 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.44 36.00 0.38 -0.54 16 2 C 0.05 1.00 7.21 -82.44 -0.59 0.40 16 3 C -0.29 -5.92 9.58 -39.78 -0.38 -6.30 16 4 C 0.30 6.21 7.66 -153.16 -1.17 5.03 16 5 N -0.64 -10.70 5.41 -11.46 -0.06 -10.76 16 6 C 0.52 7.46 7.79 -10.98 -0.09 7.38 16 7 O -0.52 -8.50 13.11 5.55 0.07 -8.43 16 8 C -0.13 -1.30 4.99 -27.88 -0.14 -1.44 16 9 C -0.10 -0.86 5.10 -27.88 -0.14 -1.00 16 10 C 0.48 4.46 8.33 36.01 0.30 4.76 16 11 O -0.52 -6.38 16.74 -18.75 -0.31 -6.70 16 12 O -0.52 -3.66 13.42 -39.24 -0.53 -4.18 16 13 N -0.34 -8.01 3.60 -61.58 -0.22 -8.23 16 14 C 0.26 6.37 6.01 -5.20 -0.03 6.33 16 15 C -0.54 -14.49 9.39 -34.44 -0.32 -14.82 16 16 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 17 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -24.29 13.29 55.43 0.74 -23.56 16 19 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 N -0.29 -6.63 12.56 33.65 0.42 -6.20 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.16 3.09 5.83 -52.49 -0.31 2.79 16 28 H 0.42 6.52 7.96 -40.82 -0.32 6.20 16 29 H 0.11 1.00 8.10 -51.93 -0.42 0.58 16 30 H 0.11 1.08 8.10 -51.93 -0.42 0.66 16 31 H 0.12 0.98 8.10 -51.93 -0.42 0.56 16 32 H 0.12 0.95 8.10 -51.93 -0.42 0.53 16 33 H 0.41 1.22 9.10 45.56 0.41 1.64 16 34 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.04 1.05 7.49 -51.93 -0.39 0.67 16 36 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 322.43 15.07 4.86 4.86 Total: -1.00 -33.64 322.43 -5.87 -39.51 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -3.52 Total: 6.55 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -2.29 Total: 1.49 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: 0.88 Total: -48.75 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.77 Total: -19.31 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.64 -5.87 -39.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600255045.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.969 kcal (2) G-P(sol) polarization free energy of solvation -33.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds