Wall clock time and date at job start Tue Mar 31 2020 05:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40162 * 125.97631 * 180.13084 * 4 3 2 6 6 C 1.34779 * 119.99437 * 0.31570 * 5 4 3 7 7 O 1.21291 * 120.00483 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99258 * 180.02562 * 6 5 4 9 9 C 1.53004 * 109.46888 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47297 * 179.97438 * 9 8 6 11 11 O 1.20828 * 119.99956 * 359.97438 * 10 9 8 12 12 O 1.34226 * 119.99932 * 179.97438 * 10 9 8 13 13 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 14 14 N 1.34968 * 126.07013 * 180.30992 * 2 1 3 15 15 C 1.46509 * 125.97450 * 359.96761 * 14 2 1 16 16 C 1.50698 * 109.47025 * 89.99735 * 15 14 2 17 17 H 1.08000 * 120.00464 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99358 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00418 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99496 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47006 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46890 * 120.00230 * 20 18 16 23 23 H 1.48501 * 109.46779 * 239.99778 * 20 18 16 24 24 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 27 27 H 1.07995 * 126.06990 * 359.97438 * 3 2 1 28 28 H 0.96991 * 120.00083 * 180.30991 * 5 4 3 29 29 H 1.08995 * 109.47288 * 299.99182 * 8 6 5 30 30 H 1.08990 * 109.47540 * 60.00048 * 8 6 5 31 31 H 1.09003 * 109.46799 * 299.99945 * 9 8 6 32 32 H 1.09003 * 109.47142 * 59.99472 * 9 8 6 33 33 H 0.96699 * 117.00211 * 179.97438 * 12 10 9 34 34 H 1.08994 * 109.46750 * 210.00045 * 15 14 2 35 35 H 1.09004 * 109.46474 * 329.99737 * 15 14 2 36 36 H 0.96998 * 120.00265 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7736 1.4749 0.0072 6 6 4.6367 2.8157 0.0141 7 8 3.5302 3.3124 0.0166 8 6 5.8587 3.6977 0.0175 9 6 5.4279 5.1658 0.0247 10 6 6.6498 6.0479 0.0287 11 8 7.7521 5.5530 0.0267 12 8 6.5135 7.3832 0.0347 13 7 3.6337 -0.6577 -0.0036 14 7 2.3017 -1.0909 -0.0059 15 6 1.8500 -2.4847 -0.0128 16 6 1.6945 -2.9553 -1.4359 17 1 1.9108 -2.2836 -2.2535 18 6 1.2770 -4.2437 -1.6941 19 7 1.0140 -5.0617 -0.6985 20 14 1.0848 -4.8273 -3.4582 21 1 1.4409 -3.7240 -4.3861 22 1 1.9842 -5.9844 -3.6975 23 1 -0.3229 -5.2377 -3.6932 24 1 -0.3633 -0.0056 1.0277 25 1 -0.3633 -0.8872 -0.5186 26 1 -0.3633 0.8928 -0.5090 27 1 1.9719 2.1210 -0.0004 28 1 5.6584 1.0776 0.0049 29 1 6.4547 3.4893 0.9060 30 1 6.4532 3.4983 -0.8739 31 1 4.8320 5.3739 -0.8640 32 1 4.8330 5.3656 0.9159 33 1 7.3261 7.9074 0.0375 34 1 2.5849 -3.1072 0.4976 35 1 0.8916 -2.5584 0.5012 36 1 0.7199 -5.9680 -0.8802 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600256038.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:13 Heat of formation + Delta-G solvation = -60.514166 kcal Electronic energy + Delta-G solvation = -20965.289892 eV Core-core repulsion = 17451.051064 eV Total energy + Delta-G solvation = -3514.238828 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.88495 -40.53634 -39.33946 -36.54772 -34.94000 -33.51209 -33.23892 -31.45160 -30.84391 -27.32879 -26.41230 -26.09388 -23.13738 -22.02627 -20.73917 -19.83966 -19.26071 -18.43796 -17.31925 -16.74416 -16.68960 -16.19232 -15.89834 -15.47583 -15.31151 -14.42594 -14.20493 -13.91666 -13.50487 -13.47712 -12.94342 -12.50751 -12.42227 -12.34471 -12.18659 -11.90809 -11.70329 -11.60315 -11.43684 -11.09019 -10.95682 -10.87452 -10.46006 -10.27348 -9.98082 -9.64067 -9.53815 -8.66937 -7.97322 -7.49446 -6.27686 -4.35419 1.84541 2.24733 2.44063 2.85872 2.97343 3.18952 3.27046 3.33185 3.67746 3.86102 4.23034 4.28909 4.67403 4.69271 4.98782 5.06095 5.21879 5.39568 5.42679 5.52271 5.69219 5.91867 6.07663 6.12857 6.21060 6.44401 6.51519 6.69041 6.90699 7.02938 7.41061 7.51426 7.59540 7.65347 7.86606 8.02324 8.17465 8.62157 8.73187 9.31223 10.79633 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034010 B = 0.002958 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.078893 B = 9465.111395 C = 9759.181937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.092 3.908 3 C -0.290 4.290 4 C 0.261 3.739 5 N -0.629 5.629 6 C 0.520 3.480 7 O -0.518 6.518 8 C -0.126 4.126 9 C -0.099 4.099 10 C 0.482 3.518 11 O -0.519 6.519 12 O -0.516 6.516 13 N -0.319 5.319 14 N -0.316 5.316 15 C 0.258 3.742 16 C -0.536 4.536 17 H 0.065 0.935 18 C 0.065 3.935 19 N -0.891 5.891 20 Si 0.906 3.094 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.280 1.280 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.160 0.840 28 H 0.412 0.588 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.411 0.589 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.055 19.290 2.491 20.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C -0.321 4.321 4 C 0.008 3.992 5 N -0.277 5.277 6 C 0.306 3.694 7 O -0.393 6.393 8 C -0.167 4.167 9 C -0.137 4.137 10 C 0.324 3.676 11 O -0.407 6.407 12 O -0.328 6.328 13 N -0.150 5.150 14 N -0.099 5.099 15 C 0.140 3.860 16 C -0.575 4.575 17 H 0.083 0.917 18 C -0.138 4.138 19 N -0.529 5.529 20 Si 0.733 3.267 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.089 0.911 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.177 0.823 28 H 0.248 0.752 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.269 0.731 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.832 17.921 2.535 19.346 hybrid contribution 0.580 0.255 -0.931 1.126 sum 7.412 18.176 1.603 19.695 Atomic orbital electron populations 1.20383 0.87890 1.03897 1.02555 1.21078 0.94947 0.87146 1.00821 1.21243 0.89689 0.99803 1.21353 1.19008 0.87238 0.89629 1.03321 1.42454 1.07706 1.05102 1.72396 1.20430 0.91086 0.81618 0.76238 1.90668 1.26834 1.73843 1.47928 1.21392 0.96272 0.92374 1.06614 1.21036 0.93734 0.91056 1.07869 1.23499 0.91368 0.81367 0.71333 1.90745 1.28632 1.75423 1.45917 1.84543 1.42934 1.19794 1.85514 1.77260 0.99992 1.08541 1.29210 1.49014 1.00959 1.07833 1.52069 1.19706 0.95999 0.71303 0.98974 1.21362 1.46756 0.97989 0.91360 0.91684 1.24933 0.94667 0.96040 0.98164 1.69923 1.44928 1.06965 1.31108 0.86301 0.77883 0.78802 0.83711 1.19565 1.20648 1.20619 0.91061 0.89892 0.90593 0.82294 0.75247 0.87488 0.87472 0.86436 0.86457 0.73054 0.92982 0.92759 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.49 9.89 36.01 0.36 -1.14 16 2 C 0.09 1.90 6.92 -82.28 -0.57 1.33 16 3 C -0.29 -5.81 9.52 -39.83 -0.38 -6.18 16 4 C 0.26 5.17 8.11 -154.38 -1.25 3.91 16 5 N -0.63 -9.19 5.45 -11.13 -0.06 -9.25 16 6 C 0.52 6.65 7.80 -10.98 -0.09 6.57 16 7 O -0.52 -8.14 13.11 5.55 0.07 -8.06 16 8 C -0.13 -1.06 4.99 -27.88 -0.14 -1.20 16 9 C -0.10 -0.76 5.10 -27.88 -0.14 -0.90 16 10 C 0.48 3.88 8.33 36.00 0.30 4.18 16 11 O -0.52 -5.63 16.74 -18.75 -0.31 -5.94 16 12 O -0.52 -3.16 13.42 -39.25 -0.53 -3.69 16 13 N -0.32 -7.29 12.59 31.44 0.40 -6.89 16 14 N -0.32 -7.44 3.59 -58.32 -0.21 -7.65 16 15 C 0.26 6.56 5.81 -5.19 -0.03 6.53 16 16 C -0.54 -14.67 9.39 -34.44 -0.32 -14.99 16 17 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 18 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -24.90 13.29 55.43 0.74 -24.16 16 20 Si 0.91 20.98 29.54 -169.99 -5.02 15.95 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.08 1.50 7.71 -51.93 -0.40 1.10 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.16 3.05 5.92 -52.49 -0.31 2.74 16 28 H 0.41 4.81 8.82 -40.82 -0.36 4.45 16 29 H 0.11 0.78 8.10 -51.93 -0.42 0.35 16 30 H 0.11 0.80 8.10 -51.93 -0.42 0.38 16 31 H 0.12 0.87 8.10 -51.93 -0.42 0.44 16 32 H 0.12 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.41 0.83 9.10 45.56 0.41 1.24 16 34 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.05 1.36 7.65 -51.93 -0.40 0.97 16 36 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 322.51 15.07 4.86 4.86 Total: -1.00 -34.44 322.51 -5.98 -40.42 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -3.55 Total: 4.62 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -2.36 Total: -0.21 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.86 Total: -47.95 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.77 Total: -17.69 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.44 -5.98 -40.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600256038.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.092 kcal (2) G-P(sol) polarization free energy of solvation -34.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds