Wall clock time and date at job start Tue Mar 31 2020 05:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40162 * 125.97631 * 180.13084 * 4 3 2 6 6 C 1.34779 * 119.99437 * 0.31570 * 5 4 3 7 7 O 1.21291 * 120.00483 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99258 * 180.02562 * 6 5 4 9 9 C 1.53004 * 109.46888 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47297 * 179.97438 * 9 8 6 11 11 O 1.20828 * 119.99956 * 359.97438 * 10 9 8 12 12 O 1.34226 * 119.99932 * 179.97438 * 10 9 8 13 13 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 14 14 N 1.34968 * 126.07013 * 180.30992 * 2 1 3 15 15 C 1.46509 * 125.97450 * 359.96761 * 14 2 1 16 16 C 1.50698 * 109.47025 * 89.99735 * 15 14 2 17 17 H 1.08000 * 120.00464 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99358 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00418 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99496 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47006 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46890 * 120.00230 * 20 18 16 23 23 H 1.48501 * 109.46779 * 239.99778 * 20 18 16 24 24 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 27 27 H 1.07995 * 126.06990 * 359.97438 * 3 2 1 28 28 H 0.96991 * 120.00083 * 180.30991 * 5 4 3 29 29 H 1.08995 * 109.47288 * 299.99182 * 8 6 5 30 30 H 1.08990 * 109.47540 * 60.00048 * 8 6 5 31 31 H 1.09003 * 109.46799 * 299.99945 * 9 8 6 32 32 H 1.09003 * 109.47142 * 59.99472 * 9 8 6 33 33 H 0.96699 * 117.00211 * 179.97438 * 12 10 9 34 34 H 1.08994 * 109.46750 * 210.00045 * 15 14 2 35 35 H 1.09004 * 109.46474 * 329.99737 * 15 14 2 36 36 H 0.96998 * 120.00265 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7736 1.4749 0.0072 6 6 4.6367 2.8157 0.0141 7 8 3.5302 3.3124 0.0166 8 6 5.8587 3.6977 0.0175 9 6 5.4279 5.1658 0.0247 10 6 6.6498 6.0479 0.0287 11 8 7.7521 5.5530 0.0267 12 8 6.5135 7.3832 0.0347 13 7 3.6337 -0.6577 -0.0036 14 7 2.3017 -1.0909 -0.0059 15 6 1.8500 -2.4847 -0.0128 16 6 1.6945 -2.9553 -1.4359 17 1 1.9108 -2.2836 -2.2535 18 6 1.2770 -4.2437 -1.6941 19 7 1.0140 -5.0617 -0.6985 20 14 1.0848 -4.8273 -3.4582 21 1 1.4409 -3.7240 -4.3861 22 1 1.9842 -5.9844 -3.6975 23 1 -0.3229 -5.2377 -3.6932 24 1 -0.3633 -0.0056 1.0277 25 1 -0.3633 -0.8872 -0.5186 26 1 -0.3633 0.8928 -0.5090 27 1 1.9719 2.1210 -0.0004 28 1 5.6584 1.0776 0.0049 29 1 6.4547 3.4893 0.9060 30 1 6.4532 3.4983 -0.8739 31 1 4.8320 5.3739 -0.8640 32 1 4.8330 5.3656 0.9159 33 1 7.3261 7.9074 0.0375 34 1 2.5849 -3.1072 0.4976 35 1 0.8916 -2.5584 0.5012 36 1 0.7199 -5.9680 -0.8802 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600256038.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:13 Heat of formation + Delta-G solvation = -84.962660 kcal Electronic energy + Delta-G solvation = -20966.350058 eV Core-core repulsion = 17451.051064 eV Total energy + Delta-G solvation = -3515.298994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.30406 -41.31898 -40.49744 -37.13274 -36.36178 -35.29781 -34.13960 -32.95772 -32.59469 -28.85269 -27.87905 -27.33394 -24.93079 -23.09888 -21.67769 -21.25342 -20.60768 -19.14746 -18.80275 -18.17808 -17.63076 -17.41273 -17.06657 -16.79625 -16.51601 -16.14416 -15.74171 -15.02082 -14.62403 -14.48833 -14.22747 -14.05080 -13.79504 -13.59343 -13.54894 -13.14491 -13.06314 -12.82044 -12.69492 -12.50955 -12.27121 -12.24525 -12.07221 -11.62546 -11.53388 -11.33021 -10.89564 -10.73972 -9.57682 -9.13421 -8.33352 -6.51104 0.91801 1.23887 1.31007 1.36773 1.38837 1.43707 1.52172 2.06992 2.21930 2.33305 2.53743 2.96340 3.48660 3.74889 3.98455 4.07333 4.17009 4.43817 4.49087 4.64164 4.77606 4.78515 4.80913 4.86786 4.91394 5.00151 5.02681 5.16025 5.28149 5.53483 5.66335 5.80667 5.96040 6.26609 6.27888 6.62054 6.98810 7.03070 7.12888 7.20147 8.72780 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034010 B = 0.002958 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.078893 B = 9465.111395 C = 9759.181937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.086 3.914 3 C -0.297 4.297 4 C 0.270 3.730 5 N -0.625 5.625 6 C 0.524 3.476 7 O -0.545 6.545 8 C -0.113 4.113 9 C -0.098 4.098 10 C 0.492 3.508 11 O -0.549 6.549 12 O -0.514 6.514 13 N -0.360 5.360 14 N -0.344 5.344 15 C 0.275 3.725 16 C -0.552 4.552 17 H 0.049 0.951 18 C 0.022 3.978 19 N -0.918 5.918 20 Si 0.972 3.028 21 H -0.274 1.274 22 H -0.275 1.275 23 H -0.267 1.267 24 H 0.093 0.907 25 H 0.066 0.934 26 H 0.103 0.897 27 H 0.171 0.829 28 H 0.426 0.574 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.429 0.571 34 H 0.024 0.976 35 H 0.052 0.948 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.253 20.917 1.828 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.044 4.044 3 C -0.328 4.328 4 C 0.016 3.984 5 N -0.275 5.275 6 C 0.312 3.688 7 O -0.420 6.420 8 C -0.153 4.153 9 C -0.136 4.136 10 C 0.336 3.664 11 O -0.440 6.440 12 O -0.328 6.328 13 N -0.191 5.191 14 N -0.127 5.127 15 C 0.156 3.844 16 C -0.590 4.590 17 H 0.067 0.933 18 C -0.179 4.179 19 N -0.556 5.556 20 Si 0.796 3.204 21 H -0.198 1.198 22 H -0.200 1.200 23 H -0.192 1.192 24 H 0.111 0.889 25 H 0.085 0.915 26 H 0.122 0.878 27 H 0.188 0.812 28 H 0.264 0.736 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.291 0.709 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.052 19.597 1.882 20.912 hybrid contribution 0.559 -0.077 -0.676 0.881 sum 7.611 19.520 1.206 20.986 Atomic orbital electron populations 1.20506 0.85392 1.04396 1.04106 1.21785 0.96698 0.86506 0.99456 1.21463 0.89805 0.99987 1.21540 1.19398 0.89014 0.89236 1.00745 1.42675 1.06957 1.05378 1.72499 1.21247 0.92118 0.80938 0.74460 1.90645 1.28441 1.74074 1.48861 1.21373 0.94026 0.91745 1.08141 1.21025 0.93747 0.90432 1.08402 1.23404 0.90729 0.81843 0.70403 1.90744 1.29683 1.76028 1.47573 1.84501 1.44329 1.19069 1.84865 1.77177 1.00080 1.10233 1.31601 1.48794 1.01815 1.07544 1.54525 1.19239 0.94880 0.72493 0.97760 1.21463 1.47461 0.98365 0.91760 0.93278 1.25736 0.93959 0.95897 1.02264 1.70002 1.45124 1.07433 1.33076 0.85300 0.78485 0.78081 0.78557 1.19828 1.20015 1.19159 0.88896 0.91550 0.87808 0.81179 0.73640 0.85772 0.85970 0.86038 0.85899 0.70902 0.95823 0.93031 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.81 9.89 71.24 0.70 -2.11 16 2 C 0.09 3.56 6.92 41.38 0.29 3.85 16 3 C -0.30 -11.74 9.52 22.11 0.21 -11.53 16 4 C 0.27 10.66 8.11 133.32 1.08 11.74 16 5 N -0.63 -17.56 5.45 -307.50 -1.68 -19.23 16 6 C 0.52 12.45 7.80 87.66 0.68 13.13 16 7 O -0.54 -16.20 13.11 -3.06 -0.04 -16.24 16 8 C -0.11 -1.62 4.99 29.85 0.15 -1.47 16 9 C -0.10 -1.26 5.10 29.85 0.15 -1.11 16 10 C 0.49 6.79 8.33 71.24 0.59 7.38 16 11 O -0.55 -10.78 16.74 21.96 0.37 -10.41 16 12 O -0.51 -5.03 13.42 -51.38 -0.69 -5.72 16 13 N -0.36 -16.79 12.59 -54.44 -0.69 -17.48 16 14 N -0.34 -16.61 3.59 -338.43 -1.22 -17.83 16 15 C 0.28 14.56 5.81 85.63 0.50 15.06 16 16 C -0.55 -30.96 9.39 25.60 0.24 -30.72 16 17 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 18 C 0.02 1.22 5.46 84.66 0.46 1.69 16 19 N -0.92 -51.78 13.29 21.45 0.28 -51.49 16 20 Si 0.97 42.99 29.54 68.60 2.03 45.02 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 24 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 25 H 0.07 2.40 7.71 -2.39 -0.02 2.38 16 26 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 27 H 0.17 6.31 5.92 -2.91 -0.02 6.29 16 28 H 0.43 9.42 8.82 -92.71 -0.82 8.60 16 29 H 0.12 1.44 8.10 -2.39 -0.02 1.42 16 30 H 0.12 1.48 8.10 -2.39 -0.02 1.46 16 31 H 0.12 1.51 8.10 -2.39 -0.02 1.49 16 32 H 0.12 1.48 8.10 -2.39 -0.02 1.46 16 33 H 0.43 0.68 9.10 -74.06 -0.67 0.01 16 34 H 0.02 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 2.70 7.65 -2.39 -0.02 2.68 16 36 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -74.67 322.51 3.08 -71.60 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -0.35 Total: 15.89 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 5.06 Total: 5.91 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -3.29 Total: -106.03 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.36 Total: -32.37 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -74.67 3.08 -71.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600256038.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.366 kcal (2) G-P(sol) polarization free energy of solvation -74.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds