Wall clock time and date at job start Tue Mar 31 2020 05:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38265 * 119.99171 * 2 1 4 4 C 1.38220 * 120.05265 * 179.74722 * 3 2 1 5 5 C 1.38217 * 120.02862 * 0.55815 * 4 3 2 6 6 C 1.50691 * 120.01838 * 179.72032 * 5 4 3 7 7 N 1.46495 * 109.47369 * 258.12517 * 6 5 4 8 8 C 1.36938 * 119.99728 * 79.95629 * 7 6 5 9 9 H 1.08000 * 119.99934 * 183.11959 * 8 7 6 10 10 C 1.38812 * 120.00162 * 3.11368 * 8 7 6 11 11 N 1.31622 * 120.00018 * 37.09037 * 10 8 7 12 12 Si 1.86806 * 120.00201 * 217.09401 * 10 8 7 13 13 H 1.48497 * 109.47087 * 59.99678 * 12 10 8 14 14 H 1.48497 * 109.47001 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46838 * 299.99871 * 12 10 8 16 16 C 1.46499 * 120.00332 * 259.67943 * 7 6 5 17 17 C 1.53004 * 109.47013 * 100.85191 * 16 7 6 18 18 C 1.50696 * 109.47376 * 175.40755 * 17 16 7 19 19 O 1.20833 * 119.99534 * 0.02562 * 18 17 16 20 20 O 1.34224 * 120.00398 * 180.02562 * 18 17 16 21 21 C 1.38447 * 119.97001 * 359.44105 * 5 4 3 22 22 F 1.35099 * 120.02407 * 180.29723 * 21 5 4 23 23 C 1.38178 * 119.98533 * 180.02562 * 2 1 3 24 24 H 1.09010 * 109.46940 * 269.97894 * 1 2 3 25 25 H 1.09003 * 109.47370 * 29.96790 * 1 2 3 26 26 H 1.08998 * 109.47580 * 149.97596 * 1 2 3 27 27 H 1.08000 * 119.97352 * 0.02709 * 3 2 1 28 28 H 1.08008 * 119.98809 * 180.27724 * 4 3 2 29 29 H 1.09008 * 109.47352 * 138.12636 * 6 5 4 30 30 H 1.09000 * 109.47396 * 18.12675 * 6 5 4 31 31 H 0.96993 * 120.00199 * 180.02562 * 11 10 8 32 32 H 1.08995 * 109.47029 * 220.84994 * 16 7 6 33 33 H 1.08992 * 109.47203 * 340.85803 * 16 7 6 34 34 H 1.09001 * 109.47082 * 295.41622 * 17 16 7 35 35 H 1.09002 * 109.47096 * 55.41111 * 17 16 7 36 36 H 0.96700 * 117.00542 * 180.02562 * 20 18 17 37 37 H 1.08003 * 120.01032 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5803 1.1990 0.0053 5 6 4.2733 0.0031 -0.0011 6 6 5.7802 0.0050 -0.0017 7 7 6.2684 -0.2717 -1.3549 8 6 6.3000 0.7289 -2.2893 9 1 6.6121 0.5137 -3.3006 10 6 5.9307 2.0197 -1.9367 11 7 6.2427 2.4922 -0.7485 12 14 4.9908 3.0864 -3.1486 13 1 3.7059 2.4275 -3.4949 14 1 4.7179 4.4105 -2.5344 15 1 5.8012 3.2686 -4.3795 16 6 6.7285 -1.6173 -1.7069 17 6 5.6301 -2.3445 -2.4851 18 6 6.1432 -3.6849 -2.9444 19 8 7.2715 -4.0240 -2.6763 20 8 5.3468 -4.5022 -3.6512 21 6 3.5824 -1.1966 -0.0011 22 9 4.2586 -2.3662 -0.0012 23 6 2.1976 -1.1968 -0.0005 24 1 -0.3633 -0.0004 1.0278 25 1 -0.3634 0.8903 -0.5133 26 1 -0.3634 -0.8897 -0.5142 27 1 1.6576 2.1325 0.0004 28 1 4.1191 2.1350 0.0098 29 1 6.1449 -0.7633 0.6802 30 1 6.1425 0.9805 0.3228 31 1 5.9844 3.3940 -0.5020 32 1 7.6240 -1.5452 -2.3239 33 1 6.9575 -2.1724 -0.7973 34 1 4.7628 -2.4887 -1.8407 35 1 5.3436 -1.7488 -3.3518 36 1 5.7201 -5.3517 -3.9234 37 1 1.6575 -2.1321 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600410002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:17 Heat of formation + Delta-G solvation = -90.332978 kcal Electronic energy + Delta-G solvation = -22848.807532 eV Core-core repulsion = 19313.355702 eV Total energy + Delta-G solvation = -3535.451830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.36733 -39.82619 -38.65828 -36.27390 -35.66857 -32.67818 -32.01961 -30.03051 -29.71130 -27.68593 -25.07742 -24.18216 -22.14396 -21.75878 -20.34682 -19.92738 -17.77976 -17.15755 -16.40421 -16.13882 -15.80015 -15.71160 -15.05207 -14.98212 -14.64357 -13.56483 -13.53811 -13.40284 -13.33477 -13.10132 -12.98255 -12.54576 -12.33015 -11.92306 -11.58865 -11.33069 -11.24100 -11.14341 -10.94988 -10.87588 -10.55235 -10.37461 -10.21701 -10.14777 -9.99610 -9.82796 -8.70277 -8.21392 -7.81783 -7.05745 -5.91279 -3.22079 1.80232 1.88000 2.61733 3.32586 3.41038 3.46934 3.49143 4.19493 4.45525 4.82421 5.09300 5.23356 5.30229 5.46117 5.60149 5.64582 5.67060 5.72929 5.79799 5.86649 5.96859 6.07885 6.17556 6.31527 6.45765 6.56891 6.60590 6.73895 6.75929 6.80687 6.94528 7.07628 7.27866 7.57882 7.68116 7.69971 8.23425 8.27753 9.02574 9.71880 10.14263 11.03806 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012191 B = 0.008676 C = 0.006087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.243144 B = 3226.470036 C = 4598.679690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.068 4.068 5 C -0.094 4.094 6 C 0.151 3.849 7 N -0.577 5.577 8 C -0.257 4.257 9 H 0.079 0.921 10 C 0.010 3.990 11 N -0.876 5.876 12 Si 0.873 3.127 13 H -0.283 1.283 14 H -0.289 1.289 15 H -0.283 1.283 16 C 0.165 3.835 17 C -0.149 4.149 18 C 0.482 3.518 19 O -0.526 6.526 20 O -0.524 6.524 21 C 0.090 3.910 22 F -0.142 7.142 23 C -0.166 4.166 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.115 0.885 28 H 0.143 0.857 29 H 0.033 0.967 30 H 0.141 0.859 31 H 0.257 0.743 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.399 0.601 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.348 -6.321 1.272 10.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.085 4.085 3 C -0.159 4.159 4 C -0.087 4.087 5 C -0.097 4.097 6 C 0.025 3.975 7 N -0.295 5.295 8 C -0.384 4.384 9 H 0.097 0.903 10 C -0.188 4.188 11 N -0.521 5.521 12 Si 0.702 3.298 13 H -0.210 1.210 14 H -0.215 1.215 15 H -0.210 1.210 16 C 0.038 3.962 17 C -0.189 4.189 18 C 0.325 3.675 19 O -0.414 6.414 20 O -0.336 6.336 21 C 0.070 3.930 22 F -0.121 7.121 23 C -0.185 4.185 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.134 0.866 28 H 0.160 0.840 29 H 0.052 0.948 30 H 0.157 0.843 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.256 0.744 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.128 -5.889 1.532 10.153 hybrid contribution -0.441 -0.328 -1.058 1.192 sum -8.569 -6.217 0.474 10.598 Atomic orbital electron populations 1.20707 0.91518 1.02345 1.01784 1.19512 0.95498 0.92532 1.00914 1.21082 0.94753 0.96987 1.03069 1.21365 0.92954 0.99241 0.95098 1.21092 1.00558 0.90591 0.97495 1.20729 0.85958 1.05372 0.85458 1.44083 1.71356 1.04277 1.09801 1.19146 1.40171 0.88035 0.91089 0.90297 1.24403 1.02087 0.96073 0.96260 1.69878 1.44765 1.15593 1.21875 0.86760 0.82022 0.79320 0.81739 1.20962 1.21520 1.20950 1.20583 0.93042 0.85359 0.97239 1.22616 1.04484 0.88207 1.03576 1.24158 0.83192 0.86834 0.73323 1.90663 1.20664 1.75707 1.54396 1.84633 1.48931 1.32204 1.67790 1.17695 0.89560 0.81281 1.04442 1.91332 1.80606 1.46593 1.93560 1.20773 0.92310 0.98456 1.06956 0.91607 0.91773 0.91966 0.86648 0.83976 0.94836 0.84277 0.93214 0.92874 0.92880 0.87211 0.87986 0.74387 0.86130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.01 36.00 0.36 -0.91 16 2 C -0.08 -1.34 5.88 -104.64 -0.62 -1.96 16 3 C -0.14 -2.45 9.70 -39.58 -0.38 -2.84 16 4 C -0.07 -1.38 8.76 -39.60 -0.35 -1.72 16 5 C -0.09 -1.96 5.25 -104.56 -0.55 -2.51 16 6 C 0.15 3.41 5.08 -5.20 -0.03 3.38 16 7 N -0.58 -13.57 2.58 -174.62 -0.45 -14.02 16 8 C -0.26 -6.56 9.40 -15.06 -0.14 -6.70 16 9 H 0.08 2.02 8.04 -52.49 -0.42 1.60 16 10 C 0.01 0.25 3.75 -17.43 -0.07 0.19 16 11 N -0.88 -22.40 8.93 55.49 0.50 -21.91 16 12 Si 0.87 20.36 29.68 -169.99 -5.05 15.32 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 C 0.17 3.48 4.84 -4.04 -0.02 3.46 16 17 C -0.15 -2.79 5.97 -27.88 -0.17 -2.96 16 18 C 0.48 8.34 8.33 36.00 0.30 8.64 16 19 O -0.53 -10.28 16.69 -18.76 -0.31 -10.59 16 20 O -0.52 -7.33 13.42 -39.24 -0.53 -7.85 16 21 C 0.09 1.73 6.77 -39.41 -0.27 1.46 16 22 F -0.14 -2.71 13.67 2.25 0.03 -2.68 16 23 C -0.17 -2.80 9.68 -39.51 -0.38 -3.18 16 24 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 25 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 26 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 27 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 28 H 0.14 3.08 5.98 -52.48 -0.31 2.76 16 29 H 0.03 0.72 7.55 -51.92 -0.39 0.33 16 30 H 0.14 3.47 4.83 -51.93 -0.25 3.22 16 31 H 0.26 6.35 8.31 -40.82 -0.34 6.01 16 32 H 0.05 1.16 7.95 -51.93 -0.41 0.74 16 33 H 0.05 1.10 7.70 -51.93 -0.40 0.70 16 34 H 0.11 2.09 4.60 -51.93 -0.24 1.85 16 35 H 0.10 1.96 8.06 -51.93 -0.42 1.54 16 36 H 0.40 3.60 9.10 45.56 0.41 4.02 16 37 H 0.12 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 312.25 15.07 4.71 4.71 Total: -1.00 -28.29 312.25 -7.08 -35.37 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -3.68 Total: 7.30 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -2.30 Total: -5.64 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.04 Total: -35.92 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.84 Total: -18.45 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.03 Total: -2.68 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.05 Total: 15.32 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.29 -7.08 -35.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600410002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.959 kcal (2) G-P(sol) polarization free energy of solvation -28.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds