Wall clock time and date at job start Tue Mar 31 2020 05:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38265 * 119.99171 * 2 1 4 4 C 1.38220 * 120.05265 * 179.74722 * 3 2 1 5 5 C 1.38217 * 120.02862 * 0.55815 * 4 3 2 6 6 C 1.50691 * 120.01838 * 179.72032 * 5 4 3 7 7 N 1.46495 * 109.47369 * 258.12517 * 6 5 4 8 8 C 1.36938 * 119.99728 * 79.95629 * 7 6 5 9 9 H 1.08000 * 119.99934 * 183.11959 * 8 7 6 10 10 C 1.38812 * 120.00162 * 3.11368 * 8 7 6 11 11 N 1.31622 * 120.00018 * 37.09037 * 10 8 7 12 12 Si 1.86806 * 120.00201 * 217.09401 * 10 8 7 13 13 H 1.48497 * 109.47087 * 59.99678 * 12 10 8 14 14 H 1.48497 * 109.47001 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46838 * 299.99871 * 12 10 8 16 16 C 1.46499 * 120.00332 * 259.67943 * 7 6 5 17 17 C 1.53004 * 109.47013 * 100.85191 * 16 7 6 18 18 C 1.50696 * 109.47376 * 175.40755 * 17 16 7 19 19 O 1.20833 * 119.99534 * 0.02562 * 18 17 16 20 20 O 1.34224 * 120.00398 * 180.02562 * 18 17 16 21 21 C 1.38447 * 119.97001 * 359.44105 * 5 4 3 22 22 F 1.35099 * 120.02407 * 180.29723 * 21 5 4 23 23 C 1.38178 * 119.98533 * 180.02562 * 2 1 3 24 24 H 1.09010 * 109.46940 * 269.97894 * 1 2 3 25 25 H 1.09003 * 109.47370 * 29.96790 * 1 2 3 26 26 H 1.08998 * 109.47580 * 149.97596 * 1 2 3 27 27 H 1.08000 * 119.97352 * 0.02709 * 3 2 1 28 28 H 1.08008 * 119.98809 * 180.27724 * 4 3 2 29 29 H 1.09008 * 109.47352 * 138.12636 * 6 5 4 30 30 H 1.09000 * 109.47396 * 18.12675 * 6 5 4 31 31 H 0.96993 * 120.00199 * 180.02562 * 11 10 8 32 32 H 1.08995 * 109.47029 * 220.84994 * 16 7 6 33 33 H 1.08992 * 109.47203 * 340.85803 * 16 7 6 34 34 H 1.09001 * 109.47082 * 295.41622 * 17 16 7 35 35 H 1.09002 * 109.47096 * 55.41111 * 17 16 7 36 36 H 0.96700 * 117.00542 * 180.02562 * 20 18 17 37 37 H 1.08003 * 120.01032 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5803 1.1990 0.0053 5 6 4.2733 0.0031 -0.0011 6 6 5.7802 0.0050 -0.0017 7 7 6.2684 -0.2717 -1.3549 8 6 6.3000 0.7289 -2.2893 9 1 6.6121 0.5137 -3.3006 10 6 5.9307 2.0197 -1.9367 11 7 6.2427 2.4922 -0.7485 12 14 4.9908 3.0864 -3.1486 13 1 3.7059 2.4275 -3.4949 14 1 4.7179 4.4105 -2.5344 15 1 5.8012 3.2686 -4.3795 16 6 6.7285 -1.6173 -1.7069 17 6 5.6301 -2.3445 -2.4851 18 6 6.1432 -3.6849 -2.9444 19 8 7.2715 -4.0240 -2.6763 20 8 5.3468 -4.5022 -3.6512 21 6 3.5824 -1.1966 -0.0011 22 9 4.2586 -2.3662 -0.0012 23 6 2.1976 -1.1968 -0.0005 24 1 -0.3633 -0.0004 1.0278 25 1 -0.3634 0.8903 -0.5133 26 1 -0.3634 -0.8897 -0.5142 27 1 1.6576 2.1325 0.0004 28 1 4.1191 2.1350 0.0098 29 1 6.1449 -0.7633 0.6802 30 1 6.1425 0.9805 0.3228 31 1 5.9844 3.3940 -0.5020 32 1 7.6240 -1.5452 -2.3239 33 1 6.9575 -2.1724 -0.7973 34 1 4.7628 -2.4887 -1.8407 35 1 5.3436 -1.7488 -3.3518 36 1 5.7201 -5.3517 -3.9234 37 1 1.6575 -2.1321 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600410002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:16 Heat of formation + Delta-G solvation = -105.580748 kcal Electronic energy + Delta-G solvation = -22849.468725 eV Core-core repulsion = 19313.355702 eV Total energy + Delta-G solvation = -3536.113023 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.83498 -41.20819 -40.07590 -37.89030 -37.04487 -34.21332 -33.68867 -31.56230 -31.19458 -29.12377 -26.83553 -25.63296 -23.55987 -23.31073 -21.76293 -21.54846 -19.20378 -18.86665 -17.83791 -17.62071 -17.24869 -17.18199 -16.54700 -16.47651 -16.35506 -15.32921 -15.22479 -14.84516 -14.57222 -14.43126 -14.29489 -13.99769 -13.79843 -13.22854 -13.10857 -12.93119 -12.73653 -12.59927 -12.54671 -12.38208 -12.23418 -11.96701 -11.89884 -11.78666 -11.63035 -11.55474 -10.56658 -9.63395 -9.25145 -8.92589 -7.82468 -5.16568 0.38205 0.48407 1.22397 1.45841 1.52048 1.58513 2.14935 2.55664 2.78990 3.16951 3.46005 3.78089 3.99527 4.03786 4.10628 4.18623 4.28149 4.41376 4.49413 4.61512 4.75641 4.77439 4.85556 4.90266 4.93082 5.03083 5.20967 5.27609 5.34964 5.40773 5.60772 5.65271 5.68932 5.74318 5.89339 6.17867 6.39488 7.02904 7.11738 7.84122 8.25606 9.10091 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012191 B = 0.008676 C = 0.006087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.243144 B = 3226.470036 C = 4598.679690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.074 4.074 3 C -0.144 4.144 4 C -0.087 4.087 5 C -0.117 4.117 6 C 0.155 3.845 7 N -0.588 5.588 8 C -0.273 4.273 9 H 0.071 0.929 10 C -0.016 4.016 11 N -0.890 5.890 12 Si 0.919 3.081 13 H -0.286 1.286 14 H -0.288 1.288 15 H -0.286 1.286 16 C 0.169 3.831 17 C -0.139 4.139 18 C 0.494 3.506 19 O -0.551 6.551 20 O -0.512 6.512 21 C 0.078 3.922 22 F -0.145 7.145 23 C -0.162 4.162 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.138 0.862 28 H 0.121 0.879 29 H 0.031 0.969 30 H 0.116 0.884 31 H 0.256 0.744 32 H 0.039 0.961 33 H 0.051 0.949 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.425 0.575 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.075 -7.291 0.812 13.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.074 4.074 3 C -0.162 4.162 4 C -0.106 4.106 5 C -0.121 4.121 6 C 0.030 3.970 7 N -0.307 5.307 8 C -0.401 4.401 9 H 0.089 0.911 10 C -0.213 4.213 11 N -0.535 5.535 12 Si 0.748 3.252 13 H -0.213 1.213 14 H -0.214 1.214 15 H -0.212 1.212 16 C 0.042 3.958 17 C -0.179 4.179 18 C 0.338 3.662 19 O -0.442 6.442 20 O -0.325 6.325 21 C 0.059 3.941 22 F -0.124 7.124 23 C -0.181 4.181 24 H 0.104 0.896 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.156 0.844 28 H 0.139 0.861 29 H 0.050 0.950 30 H 0.132 0.868 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.129 0.871 35 H 0.116 0.884 36 H 0.286 0.714 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.869 -6.892 1.061 12.914 hybrid contribution 0.374 -0.081 -0.897 0.976 sum -10.495 -6.973 0.164 12.601 Atomic orbital electron populations 1.20804 0.87997 1.03809 1.03521 1.20010 0.97894 0.91393 0.98125 1.21360 0.93623 0.98908 1.02345 1.21277 0.94419 0.98138 0.96798 1.20859 0.99333 0.91884 0.99978 1.20498 0.87743 1.03767 0.85020 1.44174 1.71975 1.04758 1.09778 1.19252 1.40839 0.88838 0.91181 0.91085 1.24799 1.02405 0.96774 0.97354 1.69976 1.45128 1.15669 1.22774 0.86043 0.80715 0.78228 0.80169 1.21276 1.21360 1.21193 1.20507 0.93338 0.84783 0.97177 1.22276 1.03339 0.89163 1.03078 1.23621 0.82713 0.86616 0.73224 1.90666 1.21720 1.76241 1.55580 1.84540 1.48008 1.33351 1.66647 1.17825 0.90630 0.80572 1.05098 1.91316 1.80920 1.46504 1.93657 1.21134 0.91203 1.00217 1.05542 0.89564 0.90617 0.90288 0.84393 0.86086 0.95031 0.86752 0.93331 0.94289 0.93084 0.87102 0.88425 0.71393 0.83195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.99 10.01 71.24 0.71 -1.28 16 2 C -0.07 -2.11 5.88 -19.87 -0.12 -2.23 16 3 C -0.14 -4.76 9.70 22.27 0.22 -4.54 16 4 C -0.09 -3.56 8.76 22.26 0.20 -3.36 16 5 C -0.12 -4.96 5.25 -19.82 -0.10 -5.07 16 6 C 0.16 7.29 5.08 85.63 0.44 7.73 16 7 N -0.59 -28.44 2.58 -706.37 -1.82 -30.27 16 8 C -0.27 -14.29 9.40 84.03 0.79 -13.50 16 9 H 0.07 3.74 8.04 -2.91 -0.02 3.72 16 10 C -0.02 -0.82 3.75 84.86 0.32 -0.50 16 11 N -0.89 -46.83 8.93 21.65 0.19 -46.64 16 12 Si 0.92 42.20 29.68 68.60 2.04 44.24 16 13 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 14 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 15 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 16 C 0.17 7.26 4.84 86.38 0.42 7.68 16 17 C -0.14 -5.16 5.97 29.85 0.18 -4.98 16 18 C 0.49 16.50 8.33 71.23 0.59 17.09 16 19 O -0.55 -21.15 16.69 21.94 0.37 -20.79 16 20 O -0.51 -12.95 13.42 -51.36 -0.69 -13.64 16 21 C 0.08 2.94 6.77 22.38 0.15 3.09 16 22 F -0.15 -5.43 13.67 44.97 0.61 -4.82 16 23 C -0.16 -5.00 9.68 22.31 0.22 -4.78 16 24 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.07 1.31 8.09 -2.39 -0.02 1.29 16 26 H 0.08 1.28 8.08 -2.39 -0.02 1.26 16 27 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 28 H 0.12 5.39 5.98 -2.91 -0.02 5.38 16 29 H 0.03 1.43 7.55 -2.38 -0.02 1.41 16 30 H 0.12 5.99 4.83 -2.39 -0.01 5.98 16 31 H 0.26 13.01 8.31 -92.71 -0.77 12.24 16 32 H 0.04 1.75 7.95 -2.39 -0.02 1.74 16 33 H 0.05 2.17 7.70 -2.39 -0.02 2.15 16 34 H 0.11 4.14 4.60 -2.39 -0.01 4.13 16 35 H 0.10 3.73 8.06 -2.39 -0.02 3.71 16 36 H 0.42 6.32 9.10 -74.06 -0.67 5.65 16 37 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -61.41 312.25 5.14 -56.27 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.43 Total: 20.28 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 4.00 Total: -4.65 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -1.63 Total: -76.90 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -0.32 Total: -34.42 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.61 Total: -4.82 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.04 Total: 44.24 kcal Total: -61.41 5.14 -56.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600410002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.306 kcal (2) G-P(sol) polarization free energy of solvation -61.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds