Wall clock time and date at job start Tue Mar 31 2020 05:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38213 * 120.01483 * 2 1 4 4 C 1.38223 * 120.02614 * 180.02562 * 3 2 1 5 5 C 1.38266 * 120.04982 * 359.97239 * 4 3 2 6 6 C 1.38170 * 120.02575 * 359.79166 * 5 4 3 7 7 C 1.50707 * 120.01268 * 180.22714 * 6 5 4 8 8 N 1.46493 * 109.47068 * 263.32505 * 7 6 5 9 9 C 1.36938 * 120.00249 * 80.13054 * 8 7 6 10 10 H 1.08006 * 120.00111 * 190.97671 * 9 8 7 11 11 C 1.38816 * 119.99858 * 10.96652 * 9 8 7 12 12 N 1.31614 * 119.99879 * 31.38124 * 11 9 8 13 13 Si 1.86803 * 119.99856 * 211.38260 * 11 9 8 14 14 H 1.48491 * 109.47473 * 89.99891 * 13 11 9 15 15 H 1.48507 * 109.46790 * 209.99876 * 13 11 9 16 16 H 1.48501 * 109.47253 * 329.99488 * 13 11 9 17 17 C 1.46499 * 120.00164 * 260.12122 * 8 7 6 18 18 C 1.53001 * 109.46879 * 98.87442 * 17 8 7 19 19 C 1.50705 * 109.47346 * 188.94932 * 18 17 8 20 20 O 1.20826 * 119.99432 * 0.02562 * 19 18 17 21 21 O 1.34221 * 120.00146 * 179.97438 * 19 18 17 22 22 C 1.38437 * 120.00990 * 180.02562 * 2 1 3 23 23 F 1.35104 * 120.02920 * 359.96592 * 22 2 1 24 24 H 1.09001 * 109.47022 * 269.98255 * 1 2 3 25 25 H 1.09001 * 109.46909 * 29.98141 * 1 2 3 26 26 H 1.08999 * 109.47030 * 149.98025 * 1 2 3 27 27 H 1.08003 * 119.98885 * 0.04190 * 3 2 1 28 28 H 1.08006 * 119.97332 * 180.02562 * 4 3 2 29 29 H 1.08009 * 119.98357 * 180.02562 * 5 4 3 30 30 H 1.08997 * 109.46653 * 23.32418 * 7 6 5 31 31 H 1.09004 * 109.47163 * 143.32417 * 7 6 5 32 32 H 0.97001 * 119.99741 * 180.02562 * 12 11 9 33 33 H 1.08998 * 109.47643 * 218.87181 * 17 8 7 34 34 H 1.08997 * 109.47402 * 338.87686 * 17 8 7 35 35 H 1.09000 * 109.47473 * 308.94878 * 18 17 8 36 36 H 1.09000 * 109.47536 * 68.95432 * 18 17 8 37 37 H 0.96705 * 116.99701 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5807 1.1971 -0.0005 5 6 4.2733 0.0004 -0.0005 6 6 3.5842 -1.1973 0.0044 7 6 4.3395 -2.5014 0.0096 8 7 4.4451 -3.0100 -1.3601 9 6 5.3958 -2.5051 -2.2065 10 1 5.3641 -2.7453 -3.2591 11 6 6.4002 -1.6845 -1.7118 12 7 6.8432 -1.8538 -0.4841 13 14 7.1230 -0.3400 -2.7886 14 1 6.3490 0.9134 -2.6019 15 1 8.5395 -0.1086 -2.4075 16 1 7.0552 -0.7562 -4.2125 17 6 3.5338 -4.0589 -1.8244 18 6 2.3944 -3.4263 -2.6259 19 6 1.3450 -4.4685 -2.9157 20 8 1.4932 -5.6009 -2.5211 21 8 0.2455 -4.1386 -3.6111 22 6 2.1994 -1.1988 -0.0005 23 9 1.5247 -2.3693 -0.0004 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6585 2.1321 0.0007 28 1 4.1201 2.1328 -0.0001 29 1 5.3534 0.0018 -0.0005 30 1 5.3382 -2.3412 0.4158 31 1 3.8083 -3.2264 0.6265 32 1 7.5448 -1.2801 -0.1383 33 1 4.0783 -4.7592 -2.4577 34 1 3.1229 -4.5895 -0.9655 35 1 1.9509 -2.6150 -2.0488 36 1 2.7849 -3.0333 -3.5646 37 1 -0.3992 -4.8411 -3.7724 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600531225.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:20 Heat of formation + Delta-G solvation = -93.398373 kcal Electronic energy + Delta-G solvation = -23015.898571 eV Core-core repulsion = 19480.313815 eV Total energy + Delta-G solvation = -3535.584756 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.31277 -39.84978 -38.58712 -36.26242 -35.67104 -32.66473 -32.02846 -30.73642 -29.29955 -26.56282 -25.74535 -24.77496 -22.11938 -21.24825 -20.39016 -19.88065 -17.77306 -17.14291 -16.75026 -16.13994 -15.83972 -15.68924 -15.04172 -14.83614 -14.62931 -13.64627 -13.46864 -13.42800 -13.16138 -12.98744 -12.76026 -12.50579 -12.46169 -12.17338 -11.59714 -11.33693 -11.29000 -11.15276 -10.94597 -10.90568 -10.57577 -10.36756 -10.22182 -10.12333 -9.99662 -9.84050 -8.77823 -8.05233 -7.95888 -7.01940 -5.85077 -3.28815 1.79554 1.88318 2.59697 3.31196 3.40834 3.42149 3.46139 4.20640 4.43373 4.87944 5.12128 5.17532 5.29635 5.44848 5.59749 5.64700 5.68044 5.73157 5.76176 5.95063 6.00142 6.07799 6.17381 6.28530 6.44470 6.56691 6.59710 6.72794 6.77397 6.82998 6.92837 7.04737 7.29161 7.58712 7.66374 7.72545 8.22774 8.31169 9.03670 9.70713 10.13528 11.07301 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012645 B = 0.009029 C = 0.006174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.822224 B = 3100.248166 C = 4534.239138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.136 4.136 3 C -0.115 4.115 4 C -0.137 4.137 5 C -0.074 4.074 6 C -0.089 4.089 7 C 0.144 3.856 8 N -0.575 5.575 9 C -0.248 4.248 10 H 0.077 0.923 11 C 0.002 3.998 12 N -0.883 5.883 13 Si 0.885 3.115 14 H -0.284 1.284 15 H -0.292 1.292 16 H -0.279 1.279 17 C 0.162 3.838 18 C -0.139 4.139 19 C 0.482 3.518 20 O -0.524 6.524 21 O -0.524 6.524 22 C 0.086 3.914 23 F -0.143 7.143 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.138 0.862 30 H 0.147 0.853 31 H 0.034 0.966 32 H 0.257 0.743 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.283 3.562 0.186 10.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.136 4.136 3 C -0.134 4.134 4 C -0.155 4.155 5 C -0.092 4.092 6 C -0.092 4.092 7 C 0.018 3.982 8 N -0.293 5.293 9 C -0.376 4.376 10 H 0.094 0.906 11 C -0.196 4.196 12 N -0.529 5.529 13 Si 0.715 3.285 14 H -0.211 1.211 15 H -0.219 1.219 16 H -0.204 1.204 17 C 0.035 3.965 18 C -0.180 4.180 19 C 0.325 3.675 20 O -0.412 6.412 21 O -0.335 6.335 22 C 0.066 3.934 23 F -0.122 7.122 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.156 0.844 30 H 0.163 0.837 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -9.789 3.542 0.431 10.419 hybrid contribution -0.385 0.323 -0.858 0.995 sum -10.174 3.866 -0.428 10.892 Atomic orbital electron populations 1.20623 0.91233 1.02536 1.01905 1.19758 0.96098 0.92353 1.05439 1.20643 0.94116 0.96229 1.02370 1.21175 0.94056 0.98298 1.01994 1.21239 1.01350 0.90608 0.96052 1.21152 0.91107 1.00022 0.96964 1.20860 1.03855 0.87471 0.85993 1.44053 1.33684 1.40724 1.10820 1.19244 1.03789 1.24182 0.90392 0.90552 1.24507 0.97187 1.01523 0.96372 1.69684 1.27652 1.38602 1.16936 0.86522 0.77824 0.83561 0.80631 1.21063 1.21858 1.20437 1.20634 0.89045 0.90056 0.96795 1.22467 0.93937 0.97320 1.04254 1.24109 0.80995 0.89432 0.72963 1.90663 1.77697 1.23038 1.49833 1.84630 1.32377 1.46885 1.69646 1.17563 0.90146 0.80274 1.05426 1.91385 1.80360 1.46563 1.93904 0.91659 0.91700 0.91744 0.86413 0.86605 0.84447 0.83728 0.94809 0.93241 0.92819 0.92627 0.87806 0.88356 0.74348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 9.84 36.01 0.35 -1.06 16 2 C -0.14 -2.27 5.89 -104.55 -0.62 -2.89 16 3 C -0.12 -1.82 9.70 -39.60 -0.38 -2.21 16 4 C -0.14 -2.38 10.04 -39.58 -0.40 -2.78 16 5 C -0.07 -1.50 9.05 -39.60 -0.36 -1.86 16 6 C -0.09 -1.87 5.34 -104.55 -0.56 -2.43 16 7 C 0.14 3.29 5.13 -5.19 -0.03 3.27 16 8 N -0.58 -13.54 2.57 -174.61 -0.45 -13.99 16 9 C -0.25 -6.28 9.49 -15.06 -0.14 -6.42 16 10 H 0.08 1.93 8.00 -52.48 -0.42 1.51 16 11 C 0.00 0.04 3.68 -17.43 -0.06 -0.02 16 12 N -0.88 -22.77 9.51 55.49 0.53 -22.24 16 13 Si 0.88 20.31 29.65 -169.99 -5.04 15.27 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 C 0.16 3.41 5.17 -4.04 -0.02 3.39 16 18 C -0.14 -2.59 5.94 -27.88 -0.17 -2.76 16 19 C 0.48 8.28 8.32 36.01 0.30 8.58 16 20 O -0.52 -10.19 16.59 -18.75 -0.31 -10.50 16 21 O -0.52 -7.24 13.42 -39.23 -0.53 -7.76 16 22 C 0.09 1.65 6.24 -39.42 -0.25 1.41 16 23 F -0.14 -2.77 13.93 2.25 0.03 -2.74 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 26 H 0.06 0.88 7.64 -51.93 -0.40 0.48 16 27 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 28 H 0.12 1.74 8.06 -52.48 -0.42 1.31 16 29 H 0.14 3.01 6.19 -52.48 -0.33 2.69 16 30 H 0.15 3.65 4.66 -51.94 -0.24 3.41 16 31 H 0.03 0.75 7.43 -51.93 -0.39 0.36 16 32 H 0.26 6.40 8.31 -40.82 -0.34 6.06 16 33 H 0.05 1.15 8.11 -51.93 -0.42 0.73 16 34 H 0.06 1.18 7.38 -51.93 -0.38 0.80 16 35 H 0.10 2.01 5.07 -51.93 -0.26 1.75 16 36 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 37 H 0.40 3.56 9.10 45.56 0.41 3.97 16 LS Contribution 313.21 15.07 4.72 4.72 Total: -1.00 -28.29 313.21 -7.04 -35.33 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -3.67 Total: 7.69 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -2.33 Total: -5.78 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.08 Total: -36.23 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.84 Total: -18.26 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.03 Total: -2.74 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.04 Total: 15.27 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.29 -7.04 -35.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600531225.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.067 kcal (2) G-P(sol) polarization free energy of solvation -28.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds