Wall clock time and date at job start Tue Mar 31 2020 05:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38213 * 120.01483 * 2 1 4 4 C 1.38223 * 120.02614 * 180.02562 * 3 2 1 5 5 C 1.38266 * 120.04982 * 359.97239 * 4 3 2 6 6 C 1.38170 * 120.02575 * 359.79166 * 5 4 3 7 7 C 1.50707 * 120.01268 * 180.22714 * 6 5 4 8 8 N 1.46493 * 109.47068 * 263.32505 * 7 6 5 9 9 C 1.36938 * 120.00249 * 80.13054 * 8 7 6 10 10 H 1.08006 * 120.00111 * 190.97671 * 9 8 7 11 11 C 1.38816 * 119.99858 * 10.96652 * 9 8 7 12 12 N 1.31614 * 119.99879 * 31.38124 * 11 9 8 13 13 Si 1.86803 * 119.99856 * 211.38260 * 11 9 8 14 14 H 1.48491 * 109.47473 * 89.99891 * 13 11 9 15 15 H 1.48507 * 109.46790 * 209.99876 * 13 11 9 16 16 H 1.48501 * 109.47253 * 329.99488 * 13 11 9 17 17 C 1.46499 * 120.00164 * 260.12122 * 8 7 6 18 18 C 1.53001 * 109.46879 * 98.87442 * 17 8 7 19 19 C 1.50705 * 109.47346 * 188.94932 * 18 17 8 20 20 O 1.20826 * 119.99432 * 0.02562 * 19 18 17 21 21 O 1.34221 * 120.00146 * 179.97438 * 19 18 17 22 22 C 1.38437 * 120.00990 * 180.02562 * 2 1 3 23 23 F 1.35104 * 120.02920 * 359.96592 * 22 2 1 24 24 H 1.09001 * 109.47022 * 269.98255 * 1 2 3 25 25 H 1.09001 * 109.46909 * 29.98141 * 1 2 3 26 26 H 1.08999 * 109.47030 * 149.98025 * 1 2 3 27 27 H 1.08003 * 119.98885 * 0.04190 * 3 2 1 28 28 H 1.08006 * 119.97332 * 180.02562 * 4 3 2 29 29 H 1.08009 * 119.98357 * 180.02562 * 5 4 3 30 30 H 1.08997 * 109.46653 * 23.32418 * 7 6 5 31 31 H 1.09004 * 109.47163 * 143.32417 * 7 6 5 32 32 H 0.97001 * 119.99741 * 180.02562 * 12 11 9 33 33 H 1.08998 * 109.47643 * 218.87181 * 17 8 7 34 34 H 1.08997 * 109.47402 * 338.87686 * 17 8 7 35 35 H 1.09000 * 109.47473 * 308.94878 * 18 17 8 36 36 H 1.09000 * 109.47536 * 68.95432 * 18 17 8 37 37 H 0.96705 * 116.99701 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5807 1.1971 -0.0005 5 6 4.2733 0.0004 -0.0005 6 6 3.5842 -1.1973 0.0044 7 6 4.3395 -2.5014 0.0096 8 7 4.4451 -3.0100 -1.3601 9 6 5.3958 -2.5051 -2.2065 10 1 5.3641 -2.7453 -3.2591 11 6 6.4002 -1.6845 -1.7118 12 7 6.8432 -1.8538 -0.4841 13 14 7.1230 -0.3400 -2.7886 14 1 6.3490 0.9134 -2.6019 15 1 8.5395 -0.1086 -2.4075 16 1 7.0552 -0.7562 -4.2125 17 6 3.5338 -4.0589 -1.8244 18 6 2.3944 -3.4263 -2.6259 19 6 1.3450 -4.4685 -2.9157 20 8 1.4932 -5.6009 -2.5211 21 8 0.2455 -4.1386 -3.6111 22 6 2.1994 -1.1988 -0.0005 23 9 1.5247 -2.3693 -0.0004 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6585 2.1321 0.0007 28 1 4.1201 2.1328 -0.0001 29 1 5.3534 0.0018 -0.0005 30 1 5.3382 -2.3412 0.4158 31 1 3.8083 -3.2264 0.6265 32 1 7.5448 -1.2801 -0.1383 33 1 4.0783 -4.7592 -2.4577 34 1 3.1229 -4.5895 -0.9655 35 1 1.9509 -2.6150 -2.0488 36 1 2.7849 -3.0333 -3.5646 37 1 -0.3992 -4.8411 -3.7724 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600531225.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:19 Heat of formation + Delta-G solvation = -108.760346 kcal Electronic energy + Delta-G solvation = -23016.564716 eV Core-core repulsion = 19480.313815 eV Total energy + Delta-G solvation = -3536.250901 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.78077 -41.22282 -40.01496 -37.87152 -37.04837 -34.19818 -33.67047 -32.22673 -30.91754 -27.86585 -27.42592 -26.42297 -23.67900 -22.65278 -21.81151 -21.51465 -19.15503 -18.85798 -18.22613 -17.60314 -17.29663 -17.14405 -16.57252 -16.44471 -16.12660 -15.37719 -15.16522 -14.92784 -14.40760 -14.39253 -14.08637 -14.00787 -13.91818 -13.39686 -13.08759 -13.01544 -12.73268 -12.68924 -12.54288 -12.40192 -12.23320 -11.95319 -11.93921 -11.75996 -11.61793 -11.56787 -10.64375 -9.46150 -9.39070 -8.89328 -7.75526 -5.23241 0.38379 0.48778 1.21445 1.48127 1.53861 1.58204 2.13814 2.55708 2.80459 3.22048 3.50145 3.78598 3.93686 4.01598 4.09838 4.14115 4.24480 4.46016 4.50922 4.59144 4.72542 4.78135 4.80775 4.83726 4.91904 5.01098 5.18463 5.25997 5.34010 5.48683 5.59655 5.60047 5.64144 5.77916 5.90027 6.18233 6.43255 7.01954 7.12645 7.83289 8.25297 9.14292 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012645 B = 0.009029 C = 0.006174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.822224 B = 3100.248166 C = 4534.239138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.131 4.131 3 C -0.103 4.103 4 C -0.135 4.135 5 C -0.098 4.098 6 C -0.109 4.109 7 C 0.149 3.851 8 N -0.587 5.587 9 C -0.261 4.261 10 H 0.072 0.928 11 C -0.028 4.028 12 N -0.902 5.902 13 Si 0.934 3.066 14 H -0.280 1.280 15 H -0.297 1.297 16 H -0.278 1.278 17 C 0.166 3.834 18 C -0.130 4.130 19 C 0.495 3.505 20 O -0.550 6.550 21 O -0.511 6.511 22 C 0.069 3.931 23 F -0.149 7.149 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.162 0.838 28 H 0.141 0.859 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.026 0.974 32 H 0.254 0.746 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.600 5.601 -0.526 13.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.132 4.132 3 C -0.121 4.121 4 C -0.153 4.153 5 C -0.117 4.117 6 C -0.112 4.112 7 C 0.023 3.977 8 N -0.305 5.305 9 C -0.390 4.390 10 H 0.090 0.910 11 C -0.224 4.224 12 N -0.548 5.548 13 Si 0.763 3.237 14 H -0.207 1.207 15 H -0.224 1.224 16 H -0.203 1.203 17 C 0.039 3.961 18 C -0.170 4.170 19 C 0.338 3.662 20 O -0.441 6.441 21 O -0.325 6.325 22 C 0.050 3.950 23 F -0.128 7.128 24 H 0.100 0.900 25 H 0.111 0.889 26 H 0.077 0.923 27 H 0.179 0.821 28 H 0.159 0.841 29 H 0.132 0.868 30 H 0.138 0.862 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -12.150 5.577 -0.296 13.372 hybrid contribution 0.260 -0.320 -0.615 0.740 sum -11.890 5.256 -0.910 13.032 Atomic orbital electron populations 1.20712 0.88426 1.03660 1.03294 1.20219 0.98157 0.91461 1.03352 1.21112 0.93494 0.97591 0.99888 1.21463 0.95126 0.97959 1.00766 1.21149 1.00476 0.91859 0.98190 1.20898 0.92107 0.99050 0.99188 1.20604 1.02800 0.88708 0.85568 1.44149 1.34175 1.41360 1.10833 1.19375 1.04383 1.24809 0.90429 0.91029 1.24975 0.97648 1.02536 0.97247 1.69808 1.28016 1.38979 1.17991 0.85768 0.76850 0.81716 0.79336 1.20653 1.22378 1.20336 1.20554 0.89460 0.89545 0.96556 1.22123 0.93725 0.97301 1.03834 1.23578 0.81455 0.88309 0.72815 1.90667 1.78448 1.23881 1.51090 1.84537 1.31753 1.47844 1.68336 1.17703 0.89622 0.81200 1.06519 1.91363 1.80234 1.47093 1.94065 0.90021 0.88905 0.92319 0.82085 0.84123 0.86790 0.86170 0.95557 0.93510 0.93837 0.93487 0.88205 0.87948 0.71374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.35 9.84 71.24 0.70 -1.65 16 2 C -0.13 -3.99 5.89 -19.82 -0.12 -4.11 16 3 C -0.10 -2.84 9.70 22.26 0.22 -2.63 16 4 C -0.14 -4.37 10.04 22.27 0.22 -4.15 16 5 C -0.10 -3.99 9.05 22.26 0.20 -3.79 16 6 C -0.11 -4.65 5.34 -19.82 -0.11 -4.76 16 7 C 0.15 7.11 5.13 85.64 0.44 7.55 16 8 N -0.59 -28.53 2.57 -706.34 -1.82 -30.35 16 9 C -0.26 -13.57 9.49 84.03 0.80 -12.77 16 10 H 0.07 3.70 8.00 -2.91 -0.02 3.68 16 11 C -0.03 -1.43 3.68 84.86 0.31 -1.12 16 12 N -0.90 -48.11 9.51 21.65 0.21 -47.91 16 13 Si 0.93 42.13 29.65 68.60 2.03 44.16 16 14 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 15 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 17 C 0.17 7.17 5.17 86.38 0.45 7.61 16 18 C -0.13 -4.79 5.94 29.85 0.18 -4.62 16 19 C 0.49 16.40 8.32 71.24 0.59 17.00 16 20 O -0.55 -21.06 16.59 21.96 0.36 -20.70 16 21 O -0.51 -12.75 13.42 -51.33 -0.69 -13.44 16 22 C 0.07 2.61 6.24 22.37 0.14 2.75 16 23 F -0.15 -5.70 13.93 44.97 0.63 -5.07 16 24 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.09 1.60 8.09 -2.39 -0.02 1.58 16 26 H 0.06 1.41 7.64 -2.39 -0.02 1.39 16 27 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 28 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 29 H 0.11 5.15 6.19 -2.91 -0.02 5.13 16 30 H 0.12 6.42 4.66 -2.40 -0.01 6.41 16 31 H 0.03 1.23 7.43 -2.39 -0.02 1.21 16 32 H 0.25 13.14 8.31 -92.71 -0.77 12.37 16 33 H 0.04 1.93 8.11 -2.39 -0.02 1.91 16 34 H 0.05 2.07 7.38 -2.39 -0.02 2.05 16 35 H 0.10 3.82 5.07 -2.39 -0.01 3.81 16 36 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 37 H 0.42 6.22 9.10 -74.05 -0.67 5.54 16 Total: -1.00 -62.14 313.21 5.18 -56.96 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.43 Total: 21.03 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 4.02 Total: -4.68 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -1.61 Total: -78.25 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -0.32 Total: -34.14 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 0.63 Total: -5.07 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -62.14 5.18 -56.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600531225.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.805 kcal (2) G-P(sol) polarization free energy of solvation -62.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds