Wall clock time and date at job start Tue Mar 31 2020 05:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39865 * 125.90129 * 2 1 4 4 C 1.35315 * 107.92233 * 179.97438 * 3 2 1 5 5 N 1.34939 * 107.74793 * 359.97438 * 4 3 2 6 6 C 1.46506 * 126.04184 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47111 * 125.02283 * 6 5 4 8 8 O 1.21296 * 120.00417 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99961 * 180.02562 * 7 6 5 10 10 C 1.37105 * 119.99707 * 359.97438 * 9 7 6 11 11 H 1.07990 * 120.00127 * 322.25148 * 10 9 7 12 12 C 1.38956 * 119.99701 * 142.25297 * 10 9 7 13 13 N 1.31405 * 119.99778 * 157.64167 * 12 10 9 14 14 Si 1.86798 * 119.99997 * 337.64023 * 12 10 9 15 15 H 1.48505 * 109.47147 * 95.70171 * 14 12 10 16 16 H 1.48495 * 109.47368 * 215.70346 * 14 12 10 17 17 H 1.48506 * 109.47373 * 335.70733 * 14 12 10 18 18 C 1.46494 * 120.00328 * 180.02562 * 9 7 6 19 19 C 1.53004 * 109.47382 * 83.62085 * 18 9 7 20 20 C 1.50695 * 109.47669 * 179.97438 * 19 18 9 21 21 O 1.20830 * 119.99836 * 0.02562 * 20 19 18 22 22 O 1.34229 * 120.00383 * 179.97438 * 20 19 18 23 23 N 1.30842 * 125.89603 * 179.97438 * 2 1 3 24 24 H 1.08997 * 109.47453 * 270.01950 * 1 2 3 25 25 H 1.09001 * 109.47247 * 30.01586 * 1 2 3 26 26 H 1.08999 * 109.47199 * 150.02024 * 1 2 3 27 27 H 1.08002 * 126.03796 * 359.97438 * 3 2 1 28 28 H 1.08010 * 126.12448 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.47130 * 245.02581 * 6 5 4 30 30 H 1.09002 * 109.46888 * 5.02215 * 6 5 4 31 31 H 0.96999 * 120.00187 * 179.97438 * 13 12 10 32 32 H 1.09001 * 109.47518 * 203.62122 * 18 9 7 33 33 H 1.08998 * 109.47091 * 323.62034 * 18 9 7 34 34 H 1.09001 * 109.46824 * 300.00461 * 19 18 9 35 35 H 1.08998 * 109.47050 * 59.99923 * 19 18 9 36 36 H 0.96695 * 117.00001 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1329 0.0000 4 6 3.6142 0.7153 0.0006 5 7 3.6087 -0.6341 0.0015 6 6 4.7899 -1.5009 0.0029 7 6 4.7117 -2.4546 1.1670 8 8 3.7625 -2.4147 1.9211 9 7 5.6965 -3.3520 1.3703 10 6 6.7691 -3.3975 0.5176 11 1 6.6246 -3.2395 -0.5409 12 6 8.0422 -3.6470 1.0154 13 7 8.9765 -4.1211 0.2222 14 14 8.4255 -3.3084 2.8120 15 1 8.2755 -4.5614 3.5948 16 1 9.8193 -2.8114 2.9357 17 1 7.4862 -2.2834 3.3339 18 6 5.6202 -4.2796 2.5016 19 6 4.7605 -5.4851 2.1158 20 6 4.6825 -6.4396 3.2793 21 8 5.2555 -6.1820 4.3115 22 8 3.9759 -7.5755 3.1694 23 7 2.2741 -1.0599 0.0005 24 1 -0.3634 0.0003 1.0276 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3633 -0.8901 -0.5135 27 1 1.9923 2.1598 -0.0004 28 1 4.4891 1.3486 0.0011 29 1 4.8267 -2.0663 -0.9282 30 1 5.6884 -0.8904 0.0930 31 1 9.8654 -4.2950 0.5696 32 1 6.6231 -4.6174 2.7628 33 1 5.1731 -3.7733 3.3570 34 1 3.7576 -5.1473 1.8546 35 1 5.2076 -5.9913 1.2603 36 1 3.9549 -8.1559 3.9425 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600595376.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:18 Heat of formation + Delta-G solvation = -37.521764 kcal Electronic energy + Delta-G solvation = -22068.091814 eV Core-core repulsion = 18554.850012 eV Total energy + Delta-G solvation = -3513.241802 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.79204 -40.03655 -38.83515 -36.00186 -35.24379 -33.43946 -32.41746 -31.14932 -29.90265 -29.00598 -26.09421 -25.17887 -23.92959 -21.01944 -20.67428 -19.68923 -19.08885 -17.99497 -17.32223 -16.59950 -16.36693 -16.11731 -15.63605 -14.88317 -14.81168 -14.38309 -13.85385 -13.67785 -13.36114 -13.21563 -12.83944 -12.75042 -12.65682 -12.41780 -12.20938 -11.90968 -11.79540 -11.51501 -11.32685 -11.13934 -10.95296 -10.35239 -10.30017 -10.09747 -10.04136 -9.45788 -9.03267 -8.64053 -8.13126 -8.05253 -6.69493 -4.32958 2.32246 2.48059 2.88412 2.99751 3.14458 3.17128 3.20744 3.22782 3.52837 3.98888 4.21320 4.71864 4.99255 5.10169 5.29669 5.41175 5.46879 5.57310 5.70813 5.74640 5.79712 5.80695 5.91205 6.01445 6.04741 6.16349 6.24415 6.42835 6.43700 6.70150 7.06639 7.09911 7.38970 7.82254 7.99373 8.12456 8.19649 8.72307 9.08960 9.42408 10.39668 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014995 B = 0.005926 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.833565 B = 4723.997357 C = 6062.334872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.049 3.951 3 C -0.280 4.280 4 C 0.052 3.948 5 N -0.349 5.349 6 C 0.132 3.868 7 C 0.470 3.530 8 O -0.566 6.566 9 N -0.460 5.460 10 C -0.365 4.365 11 H 0.108 0.892 12 C 0.076 3.924 13 N -0.847 5.847 14 Si 0.867 3.133 15 H -0.267 1.267 16 H -0.284 1.284 17 H -0.260 1.260 18 C 0.119 3.881 19 C -0.124 4.124 20 C 0.485 3.515 21 O -0.521 6.521 22 O -0.519 6.519 23 N -0.262 5.262 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.140 0.860 28 H 0.170 0.830 29 H 0.108 0.892 30 H 0.124 0.876 31 H 0.279 0.721 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.839 3.305 -0.497 8.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.118 4.118 3 C -0.310 4.310 4 C -0.094 4.094 5 N -0.131 5.131 6 C 0.008 3.992 7 C 0.258 3.742 8 O -0.448 6.448 9 N -0.182 5.182 10 C -0.491 4.491 11 H 0.125 0.875 12 C -0.134 4.134 13 N -0.481 5.481 14 Si 0.693 3.307 15 H -0.193 1.193 16 H -0.211 1.211 17 H -0.184 1.184 18 C -0.005 4.005 19 C -0.163 4.163 20 C 0.328 3.672 21 O -0.409 6.409 22 O -0.331 6.331 23 N -0.085 5.085 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.158 0.842 28 H 0.187 0.813 29 H 0.126 0.874 30 H 0.142 0.858 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -7.736 2.221 -0.229 8.051 hybrid contribution 0.744 0.522 1.382 1.654 sum -6.992 2.743 1.154 7.599 Atomic orbital electron populations 1.20063 0.87358 1.02537 1.02463 1.22292 0.96754 0.91102 1.01626 1.21227 0.91711 0.99311 1.18739 1.22491 0.99569 0.84994 1.02366 1.48290 1.05238 1.04293 1.55255 1.21426 0.84117 0.93536 1.00156 1.20284 0.84546 0.82154 0.87215 1.90655 1.34219 1.72058 1.47881 1.43644 1.20243 1.27867 1.26482 1.19091 0.84265 1.54563 0.91174 0.87473 1.25323 0.95470 0.94142 0.98460 1.69760 1.04542 1.36552 1.37233 0.87065 0.78311 0.80194 0.85090 1.19334 1.21060 1.18370 1.21391 0.99626 0.89002 0.90474 1.21760 1.04625 0.94525 0.95375 1.23690 0.73981 0.80058 0.89482 1.90701 1.43727 1.75056 1.31413 1.84580 1.68379 1.33048 1.47060 1.77415 0.86383 1.22372 1.22301 0.91058 0.91040 0.91358 0.84177 0.81295 0.87395 0.85844 0.91108 0.90148 0.90616 0.87260 0.86791 0.73846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.45 36.00 0.38 -0.43 16 2 C 0.05 0.82 7.22 -82.41 -0.59 0.22 16 3 C -0.28 -4.18 10.74 -40.02 -0.43 -4.61 16 4 C 0.05 0.81 11.45 -17.23 -0.20 0.61 16 5 N -0.35 -6.50 3.40 -62.55 -0.21 -6.71 16 6 C 0.13 2.43 5.69 -5.19 -0.03 2.40 16 7 C 0.47 10.40 7.61 -10.99 -0.08 10.32 16 8 O -0.57 -14.04 15.39 5.54 0.09 -13.96 16 9 N -0.46 -10.33 2.18 -114.81 -0.25 -10.58 16 10 C -0.36 -8.57 9.05 -14.93 -0.14 -8.71 16 11 H 0.11 2.55 7.23 -52.49 -0.38 2.17 16 12 C 0.08 1.86 5.26 -17.47 -0.09 1.77 16 13 N -0.85 -21.73 13.96 55.50 0.77 -20.96 16 14 Si 0.87 19.77 25.06 -169.99 -4.26 15.51 16 15 H -0.27 -6.17 6.69 56.52 0.38 -5.79 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.26 -6.06 7.11 56.52 0.40 -5.65 16 18 C 0.12 2.59 3.22 -4.04 -0.01 2.58 16 19 C -0.12 -2.32 6.09 -27.88 -0.17 -2.49 16 20 C 0.49 8.53 8.33 36.00 0.30 8.83 16 21 O -0.52 -10.61 16.74 -18.75 -0.31 -10.92 16 22 O -0.52 -7.13 13.42 -39.26 -0.53 -7.66 16 23 N -0.26 -5.24 11.64 33.67 0.39 -4.85 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.17 1.95 8.06 -52.48 -0.42 1.52 16 29 H 0.11 1.88 7.67 -51.93 -0.40 1.48 16 30 H 0.12 2.00 8.02 -51.93 -0.42 1.59 16 31 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 32 H 0.08 1.85 3.61 -51.93 -0.19 1.66 16 33 H 0.08 1.73 7.58 -51.93 -0.39 1.34 16 34 H 0.11 2.03 8.14 -51.93 -0.42 1.61 16 35 H 0.11 2.05 8.14 -51.93 -0.42 1.62 16 36 H 0.40 3.57 9.10 45.56 0.41 3.98 16 LS Contribution 316.15 15.07 4.76 4.76 Total: -1.00 -32.56 316.15 -4.09 -36.66 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -3.48 Total: 8.22 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -1.07 Total: 10.49 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.70 Total: -43.10 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.76 Total: -32.53 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.26 Total: 15.51 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.56 -4.09 -36.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600595376.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.863 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds