Wall clock time and date at job start Tue Mar 31 2020 05:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39865 * 125.90129 * 2 1 4 4 C 1.35315 * 107.92233 * 179.97438 * 3 2 1 5 5 N 1.34939 * 107.74793 * 359.97438 * 4 3 2 6 6 C 1.46506 * 126.04184 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47111 * 125.02283 * 6 5 4 8 8 O 1.21296 * 120.00417 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99961 * 180.02562 * 7 6 5 10 10 C 1.37105 * 119.99707 * 359.97438 * 9 7 6 11 11 H 1.07990 * 120.00127 * 322.25148 * 10 9 7 12 12 C 1.38956 * 119.99701 * 142.25297 * 10 9 7 13 13 N 1.31405 * 119.99778 * 157.64167 * 12 10 9 14 14 Si 1.86798 * 119.99997 * 337.64023 * 12 10 9 15 15 H 1.48505 * 109.47147 * 95.70171 * 14 12 10 16 16 H 1.48495 * 109.47368 * 215.70346 * 14 12 10 17 17 H 1.48506 * 109.47373 * 335.70733 * 14 12 10 18 18 C 1.46494 * 120.00328 * 180.02562 * 9 7 6 19 19 C 1.53004 * 109.47382 * 83.62085 * 18 9 7 20 20 C 1.50695 * 109.47669 * 179.97438 * 19 18 9 21 21 O 1.20830 * 119.99836 * 0.02562 * 20 19 18 22 22 O 1.34229 * 120.00383 * 179.97438 * 20 19 18 23 23 N 1.30842 * 125.89603 * 179.97438 * 2 1 3 24 24 H 1.08997 * 109.47453 * 270.01950 * 1 2 3 25 25 H 1.09001 * 109.47247 * 30.01586 * 1 2 3 26 26 H 1.08999 * 109.47199 * 150.02024 * 1 2 3 27 27 H 1.08002 * 126.03796 * 359.97438 * 3 2 1 28 28 H 1.08010 * 126.12448 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.47130 * 245.02581 * 6 5 4 30 30 H 1.09002 * 109.46888 * 5.02215 * 6 5 4 31 31 H 0.96999 * 120.00187 * 179.97438 * 13 12 10 32 32 H 1.09001 * 109.47518 * 203.62122 * 18 9 7 33 33 H 1.08998 * 109.47091 * 323.62034 * 18 9 7 34 34 H 1.09001 * 109.46824 * 300.00461 * 19 18 9 35 35 H 1.08998 * 109.47050 * 59.99923 * 19 18 9 36 36 H 0.96695 * 117.00001 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1329 0.0000 4 6 3.6142 0.7153 0.0006 5 7 3.6087 -0.6341 0.0015 6 6 4.7899 -1.5009 0.0029 7 6 4.7117 -2.4546 1.1670 8 8 3.7625 -2.4147 1.9211 9 7 5.6965 -3.3520 1.3703 10 6 6.7691 -3.3975 0.5176 11 1 6.6246 -3.2395 -0.5409 12 6 8.0422 -3.6470 1.0154 13 7 8.9765 -4.1211 0.2222 14 14 8.4255 -3.3084 2.8120 15 1 8.2755 -4.5614 3.5948 16 1 9.8193 -2.8114 2.9357 17 1 7.4862 -2.2834 3.3339 18 6 5.6202 -4.2796 2.5016 19 6 4.7605 -5.4851 2.1158 20 6 4.6825 -6.4396 3.2793 21 8 5.2555 -6.1820 4.3115 22 8 3.9759 -7.5755 3.1694 23 7 2.2741 -1.0599 0.0005 24 1 -0.3634 0.0003 1.0276 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3633 -0.8901 -0.5135 27 1 1.9923 2.1598 -0.0004 28 1 4.4891 1.3486 0.0011 29 1 4.8267 -2.0663 -0.9282 30 1 5.6884 -0.8904 0.0930 31 1 9.8654 -4.2950 0.5696 32 1 6.6231 -4.6174 2.7628 33 1 5.1731 -3.7733 3.3570 34 1 3.7576 -5.1473 1.8546 35 1 5.2076 -5.9913 1.2603 36 1 3.9549 -8.1559 3.9425 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600595376.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:18 Heat of formation + Delta-G solvation = -60.436310 kcal Electronic energy + Delta-G solvation = -22069.085463 eV Core-core repulsion = 18554.850012 eV Total energy + Delta-G solvation = -3514.235452 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.06974 -41.46482 -40.51069 -37.38952 -36.95899 -34.79045 -34.23535 -32.74730 -31.15045 -30.23723 -27.47736 -27.00291 -25.43755 -22.39748 -21.94426 -21.23964 -20.56117 -19.45532 -18.84731 -18.23823 -17.93610 -17.57069 -17.09485 -16.47057 -16.37532 -15.98952 -15.33038 -15.00426 -14.79063 -14.62616 -14.51271 -14.14961 -13.96833 -13.76232 -13.63147 -13.42143 -13.05200 -12.85934 -12.80992 -12.71378 -12.65021 -12.13149 -11.88144 -11.76631 -11.36897 -11.24746 -10.72449 -10.03380 -9.91377 -9.36834 -8.60203 -6.22689 1.06976 1.07240 1.16520 1.30384 1.38151 1.60051 1.68308 1.96431 2.00687 2.12785 2.62790 2.86352 3.71802 3.75130 3.82582 4.04194 4.07925 4.23933 4.26711 4.35549 4.49662 4.54430 4.60224 4.78118 4.86613 4.88740 5.00685 5.09839 5.28496 5.32674 5.48295 5.89005 5.97224 6.12747 6.22553 6.86529 6.89730 6.95856 7.27445 7.63680 8.52269 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014995 B = 0.005926 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.833565 B = 4723.997357 C = 6062.334872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.041 3.959 3 C -0.282 4.282 4 C 0.048 3.952 5 N -0.370 5.370 6 C 0.138 3.862 7 C 0.467 3.533 8 O -0.595 6.595 9 N -0.467 5.467 10 C -0.351 4.351 11 H 0.105 0.895 12 C 0.051 3.949 13 N -0.877 5.877 14 Si 0.905 3.095 15 H -0.275 1.275 16 H -0.277 1.277 17 H -0.271 1.271 18 C 0.116 3.884 19 C -0.118 4.118 20 C 0.496 3.504 21 O -0.552 6.552 22 O -0.504 6.504 23 N -0.322 5.322 24 H 0.077 0.923 25 H 0.102 0.898 26 H 0.065 0.935 27 H 0.174 0.826 28 H 0.206 0.794 29 H 0.114 0.886 30 H 0.146 0.854 31 H 0.282 0.718 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.109 0.891 35 H 0.122 0.878 36 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.593 4.230 -0.771 9.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.126 4.126 3 C -0.311 4.311 4 C -0.097 4.097 5 N -0.152 5.152 6 C 0.014 3.986 7 C 0.257 3.743 8 O -0.479 6.479 9 N -0.189 5.189 10 C -0.478 4.478 11 H 0.122 0.878 12 C -0.156 4.156 13 N -0.512 5.512 14 Si 0.731 3.269 15 H -0.202 1.202 16 H -0.203 1.203 17 H -0.195 1.195 18 C -0.007 4.007 19 C -0.157 4.157 20 C 0.340 3.660 21 O -0.443 6.443 22 O -0.318 6.318 23 N -0.145 5.145 24 H 0.095 0.905 25 H 0.121 0.879 26 H 0.084 0.916 27 H 0.191 0.809 28 H 0.223 0.777 29 H 0.132 0.868 30 H 0.163 0.837 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.127 0.873 35 H 0.140 0.860 36 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -8.504 3.129 -0.503 9.075 hybrid contribution 0.846 0.243 1.474 1.717 sum -7.657 3.372 0.971 8.423 Atomic orbital electron populations 1.20218 0.84826 1.04002 1.03252 1.23077 0.98556 0.91100 0.99831 1.21696 0.91278 1.00429 1.17742 1.23236 1.01375 0.84123 1.00925 1.48335 1.04750 1.05317 1.56758 1.21381 0.85359 0.93405 0.98463 1.20925 0.83580 0.82117 0.87728 1.90629 1.35154 1.72837 1.49244 1.43737 1.20215 1.28480 1.26424 1.19073 0.84327 1.53259 0.91145 0.87760 1.25616 0.95628 0.94420 0.99909 1.69784 1.05078 1.38139 1.38209 0.86491 0.78099 0.79288 0.82983 1.20157 1.20307 1.19518 1.21313 0.99403 0.90005 0.90004 1.21568 1.03958 0.93933 0.96204 1.23288 0.73694 0.80653 0.88356 1.90699 1.45271 1.76000 1.32364 1.84502 1.66853 1.31944 1.48467 1.77349 0.87464 1.24621 1.25021 0.90467 0.87906 0.91591 0.80887 0.77698 0.86787 0.83670 0.90735 0.91311 0.92192 0.87251 0.85971 0.70910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.46 10.45 71.23 0.74 -0.71 16 2 C 0.04 1.31 7.22 43.10 0.31 1.62 16 3 C -0.28 -7.69 10.74 21.99 0.24 -7.46 16 4 C 0.05 1.38 11.45 83.54 0.96 2.34 16 5 N -0.37 -13.38 3.40 -351.80 -1.20 -14.58 16 6 C 0.14 4.98 5.69 85.63 0.49 5.47 16 7 C 0.47 20.65 7.61 87.66 0.67 21.32 16 8 O -0.60 -29.80 15.39 -3.08 -0.05 -29.84 16 9 N -0.47 -20.92 2.18 -635.54 -1.39 -22.31 16 10 C -0.35 -16.38 9.05 84.04 0.76 -15.62 16 11 H 0.10 4.91 7.23 -2.92 -0.02 4.88 16 12 C 0.05 2.50 5.26 84.93 0.45 2.95 16 13 N -0.88 -44.64 13.96 21.66 0.30 -44.33 16 14 Si 0.90 40.68 25.06 68.60 1.72 42.40 16 15 H -0.27 -12.63 6.69 99.48 0.67 -11.96 16 16 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 18 C 0.12 5.12 3.22 86.38 0.28 5.40 16 19 C -0.12 -4.38 6.09 29.85 0.18 -4.19 16 20 C 0.50 16.99 8.33 71.23 0.59 17.59 16 21 O -0.55 -22.27 16.74 21.95 0.37 -21.91 16 22 O -0.50 -12.75 13.42 -51.41 -0.69 -13.44 16 23 N -0.32 -12.75 11.64 -47.39 -0.55 -13.30 16 24 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 28 H 0.21 4.03 8.06 -2.91 -0.02 4.00 16 29 H 0.11 3.91 7.67 -2.39 -0.02 3.89 16 30 H 0.15 4.49 8.02 -2.39 -0.02 4.47 16 31 H 0.28 13.55 8.31 -92.71 -0.77 12.78 16 32 H 0.07 3.18 3.61 -2.39 -0.01 3.17 16 33 H 0.06 2.80 7.58 -2.39 -0.02 2.78 16 34 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 35 H 0.12 4.31 8.14 -2.39 -0.02 4.29 16 36 H 0.43 6.43 9.10 -74.06 -0.67 5.75 16 Total: -1.00 -70.12 316.15 4.58 -65.54 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.41 Total: 23.09 kcal Atomic # 6 Polarization: 23.04 SS G_CDS: 5.66 Total: 28.70 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -2.83 Total: -94.52 kcal Atomic # 8 Polarization: -64.82 SS G_CDS: -0.37 Total: -65.19 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 1.72 Total: 42.40 kcal Total: -70.12 4.58 -65.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600595376.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.100 kcal (2) G-P(sol) polarization free energy of solvation -70.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds