Wall clock time and date at job start Tue Mar 31 2020 05:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35319 * 126.13104 * 2 1 4 4 C 1.39865 * 107.91907 * 179.90725 * 3 2 1 5 5 N 1.30834 * 108.20434 * 0.36403 * 4 3 2 6 6 N 1.34945 * 126.12331 * 180.31854 * 2 1 3 7 7 C 1.46502 * 126.03973 * 359.94199 * 6 2 1 8 8 C 1.50699 * 109.47550 * 90.00150 * 7 6 2 9 9 O 1.21292 * 119.99528 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00127 * 180.02562 * 8 7 6 11 11 C 1.37097 * 120.00088 * 359.97438 * 10 8 7 12 12 H 1.08004 * 120.00146 * 8.08309 * 11 10 8 13 13 C 1.38948 * 120.00175 * 188.08607 * 11 10 8 14 14 N 1.31411 * 119.99978 * 26.12457 * 13 11 10 15 15 Si 1.86798 * 119.99917 * 206.12971 * 13 11 10 16 16 H 1.48494 * 109.47381 * 84.98628 * 15 13 11 17 17 H 1.48507 * 109.46898 * 204.98351 * 15 13 11 18 18 H 1.48500 * 109.47215 * 324.97912 * 15 13 11 19 19 C 1.46495 * 119.99666 * 179.97438 * 10 8 7 20 20 C 1.52995 * 109.47461 * 83.24385 * 19 10 8 21 21 C 1.50699 * 109.47501 * 179.97438 * 20 19 10 22 22 O 1.20826 * 119.99974 * 0.02562 * 21 20 19 23 23 O 1.34231 * 120.00493 * 179.97438 * 21 20 19 24 24 H 1.08998 * 109.47160 * 269.69043 * 1 2 3 25 25 H 1.08994 * 109.47290 * 149.68005 * 1 2 3 26 26 H 1.09003 * 109.46951 * 29.68504 * 1 2 3 27 27 H 1.07998 * 126.03455 * 0.04196 * 3 2 1 28 28 H 1.08003 * 125.89882 * 180.14981 * 4 3 2 29 29 H 1.09007 * 109.47245 * 210.00270 * 7 6 2 30 30 H 1.09006 * 109.46873 * 329.99882 * 7 6 2 31 31 H 0.96993 * 119.99857 * 180.02562 * 14 13 11 32 32 H 1.09005 * 109.47008 * 203.24428 * 19 10 8 33 33 H 1.09002 * 109.47499 * 323.23981 * 19 10 8 34 34 H 1.08997 * 109.47349 * 300.00010 * 20 19 10 35 35 H 1.09007 * 109.47149 * 59.99817 * 20 19 10 36 36 H 0.96696 * 117.00682 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0929 0.0000 4 6 3.6335 0.6558 0.0022 5 7 3.6333 -0.6525 -0.0045 6 7 2.3025 -1.0900 -0.0061 7 6 1.8538 -2.4846 -0.0126 8 6 1.6988 -2.9558 -1.4356 9 8 1.9390 -2.2008 -2.3540 10 7 1.2922 -4.2158 -1.6877 11 6 1.0201 -5.0690 -0.6497 12 1 1.0043 -4.6978 0.3645 13 6 0.7649 -6.4113 -0.9022 14 7 1.2586 -6.9831 -1.9775 15 14 -0.2803 -7.4030 0.2867 16 1 -1.7164 -7.2148 -0.0409 17 1 0.0692 -8.8418 0.1715 18 1 -0.0245 -6.9411 1.6747 19 6 1.1410 -4.6736 -3.0711 20 6 2.5007 -5.1197 -3.6122 21 6 2.3451 -5.5912 -5.0351 22 8 1.2581 -5.5720 -5.5624 23 8 3.4141 -6.0316 -5.7170 24 1 -0.3633 -0.0056 1.0276 25 1 -0.3633 -0.8870 -0.5188 26 1 -0.3633 0.8928 -0.5090 27 1 1.9741 2.1210 0.0006 28 1 4.5085 1.2889 0.0050 29 1 2.5901 -3.1057 0.4976 30 1 0.8957 -2.5604 0.5017 31 1 1.0801 -7.9199 -2.1539 32 1 0.4448 -5.5118 -3.1023 33 1 0.7558 -3.8584 -3.6836 34 1 3.1969 -4.2816 -3.5810 35 1 2.8859 -5.9350 -2.9997 36 1 3.2649 -6.3234 -6.6268 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600607224.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:21 Heat of formation + Delta-G solvation = -38.207826 kcal Electronic energy + Delta-G solvation = -22348.621879 eV Core-core repulsion = 18835.350327 eV Total energy + Delta-G solvation = -3513.271552 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.80153 -39.64796 -38.58590 -35.67770 -35.16460 -32.92528 -31.84379 -31.68899 -30.65197 -26.98903 -26.56771 -25.31391 -23.70198 -20.90496 -20.44975 -19.67514 -19.10043 -17.65726 -17.14645 -16.60143 -15.94825 -15.60642 -15.25978 -14.77227 -14.60601 -14.29357 -14.01321 -13.51043 -13.31501 -12.91006 -12.68699 -12.50649 -12.48287 -12.31319 -11.78481 -11.70415 -11.66792 -11.35566 -11.06249 -10.95094 -10.69568 -10.58551 -10.16150 -10.05604 -9.89952 -9.23141 -9.16624 -8.52347 -8.11520 -7.99505 -6.68505 -4.12792 2.30911 2.90924 2.94732 2.97875 3.10514 3.11816 3.26557 3.49187 3.75852 3.92200 4.60386 4.76691 5.01061 5.08855 5.37402 5.63574 5.67111 5.76170 5.81105 5.87052 5.98769 6.06124 6.16359 6.18668 6.32830 6.53490 6.55400 6.91536 7.03423 7.09663 7.12466 7.27058 7.43939 7.47342 8.12031 8.20004 8.51230 8.80650 9.21224 9.62466 10.33424 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.006194 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.658393 B = 4519.745916 C = 5908.948990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.095 3.905 3 C -0.288 4.288 4 C 0.036 3.964 5 N -0.290 5.290 6 N -0.339 5.339 7 C 0.128 3.872 8 C 0.436 3.564 9 O -0.589 6.589 10 N -0.433 5.433 11 C -0.353 4.353 12 H 0.104 0.896 13 C 0.046 3.954 14 N -0.852 5.852 15 Si 0.920 3.080 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.269 1.269 19 C 0.154 3.846 20 C -0.111 4.111 21 C 0.492 3.508 22 O -0.529 6.529 23 O -0.525 6.525 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.140 0.860 28 H 0.176 0.824 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.275 0.725 32 H 0.108 0.892 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.136 0.864 36 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.419 5.044 2.954 5.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.034 4.034 3 C -0.317 4.317 4 C -0.150 4.150 5 N -0.111 5.111 6 N -0.121 5.121 7 C 0.003 3.997 8 C 0.223 3.777 9 O -0.475 6.475 10 N -0.152 5.152 11 C -0.479 4.479 12 H 0.121 0.879 13 C -0.161 4.161 14 N -0.489 5.489 15 Si 0.746 3.254 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.193 1.193 19 C 0.030 3.970 20 C -0.150 4.150 21 C 0.336 3.664 22 O -0.418 6.418 23 O -0.336 6.336 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.158 0.842 28 H 0.193 0.807 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.086 0.914 32 H 0.126 0.874 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.153 0.847 36 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 0.141 4.122 2.673 4.915 hybrid contribution -0.964 -0.235 -0.154 1.004 sum -0.823 3.887 2.520 4.705 Atomic orbital electron populations 1.20424 0.87903 1.04050 1.02683 1.21009 0.94550 0.87459 1.00385 1.21060 0.92461 0.98407 1.19814 1.23666 0.97803 0.92361 1.01152 1.77320 0.97150 1.12842 1.23768 1.48172 1.03555 1.05321 1.55041 1.21424 1.02048 0.78065 0.98144 1.20099 0.83588 0.83915 0.90114 1.90618 1.55623 1.55581 1.45639 1.43768 1.56121 1.09126 1.06163 1.19650 1.49458 0.90183 0.88641 0.87872 1.25178 0.96636 0.96697 0.97597 1.69982 1.38402 1.12927 1.27609 0.86056 0.80510 0.78545 0.80291 1.19995 1.20836 1.19331 1.21001 0.95442 0.99360 0.81187 1.21780 1.01997 1.03531 0.87655 1.23884 0.80934 0.72336 0.89265 1.90630 1.27970 1.52619 1.70581 1.84612 1.41120 1.76762 1.31095 0.90557 0.90860 0.89985 0.84247 0.80676 0.86707 0.87305 0.91448 0.87393 0.93156 0.89870 0.84650 0.74595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.22 9.90 36.01 0.36 -0.86 16 2 C 0.09 1.61 6.93 -82.26 -0.57 1.04 16 3 C -0.29 -4.54 10.72 -40.01 -0.43 -4.97 16 4 C 0.04 0.59 12.02 -17.37 -0.21 0.38 16 5 N -0.29 -5.80 12.58 30.62 0.39 -5.41 16 6 N -0.34 -6.59 3.10 -58.31 -0.18 -6.77 16 7 C 0.13 2.44 4.93 -5.19 -0.03 2.42 16 8 C 0.44 10.01 7.65 -10.99 -0.08 9.92 16 9 O -0.59 -15.39 16.12 5.55 0.09 -15.30 16 10 N -0.43 -10.09 2.64 -114.82 -0.30 -10.40 16 11 C -0.35 -7.96 9.25 -14.93 -0.14 -8.10 16 12 H 0.10 2.12 6.47 -52.48 -0.34 1.78 16 13 C 0.05 1.03 4.88 -17.47 -0.09 0.94 16 14 N -0.85 -19.92 8.73 55.50 0.48 -19.44 16 15 Si 0.92 17.72 29.63 -169.99 -5.04 12.69 16 16 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 17 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 19 C 0.15 3.63 3.81 -4.05 -0.02 3.61 16 20 C -0.11 -2.44 5.61 -27.89 -0.16 -2.60 16 21 C 0.49 10.05 8.33 36.00 0.30 10.35 16 22 O -0.53 -11.91 16.74 -18.75 -0.31 -12.22 16 23 O -0.52 -8.71 13.42 -39.26 -0.53 -9.23 16 24 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.07 1.07 7.72 -51.93 -0.40 0.66 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.18 2.20 8.06 -52.48 -0.42 1.78 16 29 H 0.11 2.13 8.02 -51.93 -0.42 1.72 16 30 H 0.11 1.78 7.31 -51.93 -0.38 1.40 16 31 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 32 H 0.11 2.69 5.77 -51.93 -0.30 2.39 16 33 H 0.05 1.24 7.59 -51.93 -0.39 0.85 16 34 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 35 H 0.14 3.12 6.42 -51.92 -0.33 2.79 16 36 H 0.40 4.53 9.10 45.56 0.41 4.94 16 LS Contribution 315.55 15.07 4.76 4.76 Total: -1.00 -30.99 315.55 -5.10 -36.09 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -3.40 Total: 13.10 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: -1.06 Total: 12.14 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.39 Total: -42.02 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.75 Total: -36.75 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.04 Total: 12.69 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.99 -5.10 -36.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600607224.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.118 kcal (2) G-P(sol) polarization free energy of solvation -30.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds