Wall clock time and date at job start Tue Mar 31 2020 05:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35319 * 126.13104 * 2 1 4 4 C 1.39865 * 107.91907 * 179.90725 * 3 2 1 5 5 N 1.30834 * 108.20434 * 0.36403 * 4 3 2 6 6 N 1.34945 * 126.12331 * 180.31854 * 2 1 3 7 7 C 1.46502 * 126.03973 * 359.94199 * 6 2 1 8 8 C 1.50699 * 109.47550 * 90.00150 * 7 6 2 9 9 O 1.21292 * 119.99528 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00127 * 180.02562 * 8 7 6 11 11 C 1.37097 * 120.00088 * 359.97438 * 10 8 7 12 12 H 1.08004 * 120.00146 * 8.08309 * 11 10 8 13 13 C 1.38948 * 120.00175 * 188.08607 * 11 10 8 14 14 N 1.31411 * 119.99978 * 26.12457 * 13 11 10 15 15 Si 1.86798 * 119.99917 * 206.12971 * 13 11 10 16 16 H 1.48494 * 109.47381 * 84.98628 * 15 13 11 17 17 H 1.48507 * 109.46898 * 204.98351 * 15 13 11 18 18 H 1.48500 * 109.47215 * 324.97912 * 15 13 11 19 19 C 1.46495 * 119.99666 * 179.97438 * 10 8 7 20 20 C 1.52995 * 109.47461 * 83.24385 * 19 10 8 21 21 C 1.50699 * 109.47501 * 179.97438 * 20 19 10 22 22 O 1.20826 * 119.99974 * 0.02562 * 21 20 19 23 23 O 1.34231 * 120.00493 * 179.97438 * 21 20 19 24 24 H 1.08998 * 109.47160 * 269.69043 * 1 2 3 25 25 H 1.08994 * 109.47290 * 149.68005 * 1 2 3 26 26 H 1.09003 * 109.46951 * 29.68504 * 1 2 3 27 27 H 1.07998 * 126.03455 * 0.04196 * 3 2 1 28 28 H 1.08003 * 125.89882 * 180.14981 * 4 3 2 29 29 H 1.09007 * 109.47245 * 210.00270 * 7 6 2 30 30 H 1.09006 * 109.46873 * 329.99882 * 7 6 2 31 31 H 0.96993 * 119.99857 * 180.02562 * 14 13 11 32 32 H 1.09005 * 109.47008 * 203.24428 * 19 10 8 33 33 H 1.09002 * 109.47499 * 323.23981 * 19 10 8 34 34 H 1.08997 * 109.47349 * 300.00010 * 20 19 10 35 35 H 1.09007 * 109.47149 * 59.99817 * 20 19 10 36 36 H 0.96696 * 117.00682 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0929 0.0000 4 6 3.6335 0.6558 0.0022 5 7 3.6333 -0.6525 -0.0045 6 7 2.3025 -1.0900 -0.0061 7 6 1.8538 -2.4846 -0.0126 8 6 1.6988 -2.9558 -1.4356 9 8 1.9390 -2.2008 -2.3540 10 7 1.2922 -4.2158 -1.6877 11 6 1.0201 -5.0690 -0.6497 12 1 1.0043 -4.6978 0.3645 13 6 0.7649 -6.4113 -0.9022 14 7 1.2586 -6.9831 -1.9775 15 14 -0.2803 -7.4030 0.2867 16 1 -1.7164 -7.2148 -0.0409 17 1 0.0692 -8.8418 0.1715 18 1 -0.0245 -6.9411 1.6747 19 6 1.1410 -4.6736 -3.0711 20 6 2.5007 -5.1197 -3.6122 21 6 2.3451 -5.5912 -5.0351 22 8 1.2581 -5.5720 -5.5624 23 8 3.4141 -6.0316 -5.7170 24 1 -0.3633 -0.0056 1.0276 25 1 -0.3633 -0.8870 -0.5188 26 1 -0.3633 0.8928 -0.5090 27 1 1.9741 2.1210 0.0006 28 1 4.5085 1.2889 0.0050 29 1 2.5901 -3.1057 0.4976 30 1 0.8957 -2.5604 0.5017 31 1 1.0801 -7.9199 -2.1539 32 1 0.4448 -5.5118 -3.1023 33 1 0.7558 -3.8584 -3.6836 34 1 3.1969 -4.2816 -3.5810 35 1 2.8859 -5.9350 -2.9997 36 1 3.2649 -6.3234 -6.6268 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600607224.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:21 Heat of formation + Delta-G solvation = -58.897651 kcal Electronic energy + Delta-G solvation = -22349.519057 eV Core-core repulsion = 18835.350327 eV Total energy + Delta-G solvation = -3514.168730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.12726 -41.29568 -40.32307 -37.30438 -36.89761 -34.35863 -33.62671 -32.98593 -32.32609 -28.47166 -27.75047 -27.08218 -25.39794 -22.38545 -21.88538 -21.31169 -20.62779 -19.28270 -18.77175 -18.25240 -17.43822 -17.24037 -16.90081 -16.34396 -16.17537 -15.92426 -15.47971 -14.94775 -14.63938 -14.50714 -14.20161 -14.11650 -13.71769 -13.53466 -13.42123 -13.31857 -12.96920 -12.84819 -12.74750 -12.53991 -12.37444 -12.09691 -11.90189 -11.60933 -11.46091 -11.00641 -10.82854 -10.02397 -9.92820 -9.32199 -8.41704 -5.91695 0.99129 1.24542 1.40653 1.53496 1.61479 1.64252 1.82716 2.03966 2.17038 2.31946 2.93214 3.05633 3.75804 3.87346 4.03874 4.16397 4.22700 4.29496 4.36764 4.45629 4.56812 4.73933 4.75462 4.88449 4.90691 5.04739 5.16487 5.21009 5.35073 5.46461 5.58916 5.66214 5.86646 6.17568 6.35666 6.90060 7.02057 7.04880 7.43705 7.85109 8.60607 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.006194 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.658393 B = 4519.745916 C = 5908.948990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.079 3.921 3 C -0.290 4.290 4 C 0.038 3.962 5 N -0.342 5.342 6 N -0.360 5.360 7 C 0.138 3.862 8 C 0.427 3.573 9 O -0.629 6.629 10 N -0.439 5.439 11 C -0.369 4.369 12 H 0.123 0.877 13 C 0.008 3.992 14 N -0.875 5.875 15 Si 0.986 3.014 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.254 1.254 19 C 0.160 3.840 20 C -0.101 4.101 21 C 0.501 3.499 22 O -0.552 6.552 23 O -0.512 6.512 24 H 0.105 0.895 25 H 0.054 0.946 26 H 0.101 0.899 27 H 0.173 0.827 28 H 0.210 0.790 29 H 0.116 0.884 30 H 0.136 0.864 31 H 0.275 0.725 32 H 0.094 0.906 33 H 0.030 0.970 34 H 0.073 0.927 35 H 0.127 0.873 36 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.879 5.582 4.154 7.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C -0.319 4.319 4 C -0.148 4.148 5 N -0.163 5.163 6 N -0.142 5.142 7 C 0.013 3.987 8 C 0.215 3.785 9 O -0.517 6.517 10 N -0.156 5.156 11 C -0.495 4.495 12 H 0.141 0.859 13 C -0.196 4.196 14 N -0.512 5.512 15 Si 0.810 3.190 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.178 1.178 19 C 0.036 3.964 20 C -0.140 4.140 21 C 0.345 3.655 22 O -0.444 6.444 23 O -0.325 6.325 24 H 0.123 0.877 25 H 0.074 0.926 26 H 0.120 0.880 27 H 0.190 0.810 28 H 0.227 0.773 29 H 0.134 0.866 30 H 0.154 0.846 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.144 0.856 36 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -0.300 4.655 3.870 6.061 hybrid contribution -0.754 -0.369 -0.608 1.037 sum -1.055 4.286 3.262 5.488 Atomic orbital electron populations 1.20545 0.85547 1.04130 1.04524 1.21773 0.96286 0.87203 0.99587 1.21530 0.91918 0.99699 1.18748 1.24359 0.99605 0.91743 0.99070 1.77255 0.98147 1.14756 1.26133 1.48241 1.03855 1.05587 1.56526 1.21303 1.03366 0.78655 0.95328 1.20767 0.82784 0.83385 0.91543 1.90573 1.57295 1.56538 1.47302 1.43967 1.55877 1.09620 1.06155 1.20106 1.49761 0.90382 0.89241 0.85947 1.25989 0.96997 0.97506 0.99138 1.70066 1.38965 1.13103 1.29052 0.85041 0.78302 0.76633 0.79033 1.20387 1.21379 1.17793 1.20802 0.95954 0.97884 0.81734 1.21523 1.00702 1.02729 0.89026 1.23419 0.81144 0.72063 0.88832 1.90624 1.29004 1.53726 1.70999 1.84524 1.39108 1.75938 1.32935 0.87710 0.92648 0.87986 0.80993 0.77348 0.86632 0.84638 0.91517 0.88766 0.95150 0.90850 0.85557 0.71489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.18 9.90 71.24 0.71 -1.47 16 2 C 0.08 2.57 6.93 41.41 0.29 2.86 16 3 C -0.29 -8.50 10.72 21.99 0.24 -8.26 16 4 C 0.04 1.19 12.02 85.24 1.02 2.21 16 5 N -0.34 -13.59 12.58 -57.03 -0.72 -14.31 16 6 N -0.36 -13.83 3.10 -338.39 -1.05 -14.88 16 7 C 0.14 5.26 4.93 85.63 0.42 5.68 16 8 C 0.43 19.95 7.65 87.66 0.67 20.62 16 9 O -0.63 -33.82 16.12 -3.07 -0.05 -33.87 16 10 N -0.44 -20.80 2.64 -635.55 -1.68 -22.48 16 11 C -0.37 -16.53 9.25 84.04 0.78 -15.76 16 12 H 0.12 4.88 6.47 -2.91 -0.02 4.86 16 13 C 0.01 0.36 4.88 84.93 0.41 0.77 16 14 N -0.87 -41.13 8.73 21.66 0.19 -40.94 16 15 Si 0.99 35.58 29.63 68.60 2.03 37.61 16 16 H -0.28 -10.17 7.11 99.48 0.71 -9.46 16 17 H -0.29 -10.57 7.11 99.48 0.71 -9.86 16 18 H -0.25 -8.54 7.11 99.48 0.71 -7.83 16 19 C 0.16 7.81 3.81 86.38 0.33 8.14 16 20 C -0.10 -4.57 5.61 29.85 0.17 -4.40 16 21 C 0.50 20.53 8.33 71.24 0.59 21.12 16 22 O -0.55 -25.04 16.74 21.96 0.37 -24.67 16 23 O -0.51 -16.31 13.42 -51.42 -0.69 -17.01 16 24 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.05 1.55 7.72 -2.39 -0.02 1.53 16 26 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.17 3.74 8.06 -2.91 -0.02 3.71 16 28 H 0.21 4.76 8.06 -2.91 -0.02 4.74 16 29 H 0.12 4.30 8.02 -2.38 -0.02 4.28 16 30 H 0.14 4.28 7.31 -2.38 -0.02 4.27 16 31 H 0.27 12.41 8.31 -92.71 -0.77 11.64 16 32 H 0.09 4.84 5.77 -2.38 -0.01 4.83 16 33 H 0.03 1.56 7.59 -2.39 -0.02 1.55 16 34 H 0.07 3.42 8.14 -2.39 -0.02 3.40 16 35 H 0.13 5.96 6.42 -2.38 -0.02 5.94 16 36 H 0.42 8.77 9.10 -74.06 -0.67 8.09 16 Total: -1.00 -67.88 315.55 4.48 -63.40 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: 0.45 Total: 35.63 kcal Atomic # 6 Polarization: 25.89 SS G_CDS: 5.63 Total: 31.52 kcal Atomic # 7 Polarization: -89.35 SS G_CDS: -3.26 Total: -92.61 kcal Atomic # 8 Polarization: -75.17 SS G_CDS: -0.37 Total: -75.54 kcal Atomic # 14 Polarization: 35.58 SS G_CDS: 2.03 Total: 37.61 kcal Total: -67.88 4.48 -63.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600607224.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.499 kcal (2) G-P(sol) polarization free energy of solvation -67.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds