Wall clock time and date at job start Tue Mar 31 2020 05:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34664 * 126.59102 * 2 1 4 4 N 1.34129 * 108.02056 * 179.81080 * 3 2 1 5 5 C 1.30501 * 109.25629 * 0.36916 * 4 3 2 6 6 N 1.35038 * 108.69811 * 359.62851 * 5 4 3 7 7 C 1.46504 * 126.39627 * 180.20533 * 6 5 4 8 8 C 1.50694 * 109.47462 * 266.03452 * 7 6 5 9 9 O 1.21297 * 119.99879 * 5.52723 * 8 7 6 10 10 N 1.34769 * 120.00358 * 185.52342 * 8 7 6 11 11 C 1.37099 * 119.99983 * 5.18514 * 10 8 7 12 12 H 1.08007 * 119.99929 * 318.74989 * 11 10 8 13 13 C 1.38955 * 120.00019 * 138.74254 * 11 10 8 14 14 N 1.31405 * 119.99990 * 160.63787 * 13 11 10 15 15 Si 1.86798 * 120.00008 * 340.64032 * 13 11 10 16 16 H 1.48501 * 109.47100 * 95.35116 * 15 13 11 17 17 H 1.48495 * 109.47018 * 215.35808 * 15 13 11 18 18 H 1.48508 * 109.46960 * 335.35527 * 15 13 11 19 19 C 1.46504 * 120.00277 * 185.18911 * 10 8 7 20 20 C 1.53003 * 109.46783 * 89.99884 * 19 10 8 21 21 C 1.50703 * 109.46608 * 180.02562 * 20 19 10 22 22 O 1.20824 * 120.00227 * 359.97438 * 21 20 19 23 23 O 1.34232 * 119.99782 * 180.02562 * 21 20 19 24 24 H 1.08997 * 109.46896 * 269.95970 * 1 2 3 25 25 H 1.08996 * 109.46960 * 29.96903 * 1 2 3 26 26 H 1.09005 * 109.46532 * 149.95910 * 1 2 3 27 27 H 1.08004 * 125.99270 * 0.06247 * 3 2 1 28 28 H 1.08000 * 125.64566 * 179.89253 * 5 4 3 29 29 H 1.09002 * 109.47028 * 26.04045 * 7 6 5 30 30 H 1.09004 * 109.46828 * 146.03276 * 7 6 5 31 31 H 0.97004 * 120.00429 * 179.97438 * 14 13 11 32 32 H 1.08993 * 109.47107 * 209.99611 * 19 10 8 33 33 H 1.08997 * 109.46577 * 329.99816 * 19 10 8 34 34 H 1.08999 * 109.47495 * 299.99893 * 20 19 10 35 35 H 1.08997 * 109.47619 * 60.00571 * 20 19 10 36 36 H 0.96698 * 116.99578 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0812 0.0000 4 7 3.5812 0.6541 0.0042 5 6 3.5968 -0.6508 -0.0011 6 7 2.3230 -1.0991 -0.0007 7 6 1.8944 -2.5000 -0.0014 8 6 1.6526 -2.9507 -1.4189 9 8 1.9170 -2.2117 -2.3437 10 7 1.1428 -4.1749 -1.6591 11 6 0.7449 -4.9688 -0.6146 12 1 1.3440 -5.0211 0.2826 13 6 -0.4290 -5.7061 -0.7102 14 7 -0.6267 -6.7328 0.0857 15 14 -1.7261 -5.2376 -1.9701 16 1 -1.5411 -6.0527 -3.1975 17 1 -3.0769 -5.4899 -1.4071 18 1 -1.5914 -3.7976 -2.3072 19 6 1.0137 -4.6573 -3.0364 20 6 2.2935 -5.3915 -3.4415 21 6 2.1609 -5.8872 -4.8585 22 8 1.1468 -5.6755 -5.4803 23 8 3.1692 -6.5649 -5.4295 24 1 -0.3633 -0.0007 1.0276 25 1 -0.3633 0.8902 -0.5133 26 1 -0.3632 -0.8897 -0.5145 27 1 1.9865 2.1118 0.0010 28 1 4.4820 -1.2697 -0.0012 29 1 2.6713 -3.1179 0.4489 30 1 0.9734 -2.5984 0.5733 31 1 -1.4464 -7.2473 0.0193 32 1 0.1665 -5.3396 -3.1045 33 1 0.8534 -3.8110 -3.7042 34 1 3.1409 -4.7093 -3.3735 35 1 2.4539 -6.2379 -2.7737 36 1 3.0379 -6.8623 -6.3402 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600631963.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:47 Heat of formation + Delta-G solvation = -76.481633 kcal Electronic energy + Delta-G solvation = -22380.769553 eV Core-core repulsion = 18865.838324 eV Total energy + Delta-G solvation = -3514.931229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.00250 -41.47047 -40.58866 -37.41005 -36.99075 -34.93413 -34.24029 -32.85694 -32.55373 -28.90651 -27.27188 -27.02652 -25.79461 -22.46771 -22.24304 -21.51141 -20.66821 -19.40564 -18.89844 -18.32977 -17.99490 -17.69663 -17.08256 -16.56092 -16.26421 -16.16058 -15.51512 -15.14074 -14.84520 -14.70375 -14.46708 -14.31101 -14.02705 -13.83120 -13.61466 -13.53980 -13.20989 -13.15136 -12.89776 -12.79399 -12.63588 -12.15559 -11.88715 -11.75049 -11.37302 -11.01578 -10.90488 -10.29378 -9.87269 -9.15600 -8.59477 -6.27157 1.09485 1.09722 1.15188 1.29406 1.36769 1.61660 1.77609 2.03529 2.11626 2.26645 2.69347 2.86359 3.74059 3.78841 3.85093 3.93226 3.96113 4.02951 4.28916 4.31921 4.38472 4.52653 4.57303 4.61251 4.74522 4.80640 4.92172 5.03186 5.30948 5.50919 5.53251 5.88771 5.98633 6.11127 6.31550 6.84591 6.91301 7.16810 7.24100 7.59222 8.52439 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015274 B = 0.006325 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.704652 B = 4425.572916 C = 5483.985823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.027 4.027 3 C -0.053 4.053 4 N -0.528 5.528 5 C 0.180 3.820 6 N -0.441 5.441 7 C 0.108 3.892 8 C 0.469 3.531 9 O -0.603 6.603 10 N -0.465 5.465 11 C -0.348 4.348 12 H 0.111 0.889 13 C 0.053 3.947 14 N -0.878 5.878 15 Si 0.902 3.098 16 H -0.275 1.275 17 H -0.280 1.280 18 H -0.272 1.272 19 C 0.112 3.888 20 C -0.116 4.116 21 C 0.494 3.506 22 O -0.554 6.554 23 O -0.504 6.504 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.044 0.956 27 H 0.184 0.816 28 H 0.227 0.773 29 H 0.145 0.855 30 H 0.127 0.873 31 H 0.282 0.718 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.117 0.883 35 H 0.126 0.874 36 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.980 2.592 -1.096 4.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.142 4.142 3 C -0.200 4.200 4 N -0.247 5.247 5 C -0.102 4.102 6 N -0.123 5.123 7 C -0.017 4.017 8 C 0.259 3.741 9 O -0.488 6.488 10 N -0.186 5.186 11 C -0.474 4.474 12 H 0.128 0.872 13 C -0.155 4.155 14 N -0.514 5.514 15 Si 0.729 3.271 16 H -0.202 1.202 17 H -0.207 1.207 18 H -0.197 1.197 19 C -0.012 4.012 20 C -0.155 4.155 21 C 0.338 3.662 22 O -0.446 6.446 23 O -0.318 6.318 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.064 0.936 27 H 0.201 0.799 28 H 0.243 0.757 29 H 0.163 0.837 30 H 0.145 0.855 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.135 0.865 35 H 0.144 0.856 36 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 4.417 3.319 -1.238 5.662 hybrid contribution -1.715 -0.989 -1.382 2.415 sum 2.702 2.329 -2.620 4.426 Atomic orbital electron populations 1.20264 0.86219 1.03191 1.03574 1.21675 0.95690 0.86903 1.09943 1.22318 0.88330 0.99205 1.10137 1.70193 1.23253 1.09837 1.21387 1.25346 0.88053 0.91763 1.05023 1.45168 1.07438 1.06368 1.53324 1.21593 1.05656 0.79343 0.95106 1.21047 0.80666 0.80854 0.91573 1.90646 1.57039 1.54285 1.46809 1.43697 1.56702 1.13106 1.05112 1.19083 1.06933 1.24254 0.97168 0.87209 1.25616 0.98128 0.94518 0.97199 1.69741 1.27288 1.15085 1.39265 0.86520 0.80752 0.79693 0.80089 1.20233 1.20675 1.19654 1.21324 0.96740 0.98087 0.85027 1.21568 1.00822 1.03307 0.89759 1.23381 0.79869 0.73500 0.89492 1.90707 1.32007 1.56247 1.65621 1.84499 1.43956 1.67157 1.36166 0.88971 0.88677 0.93643 0.79912 0.75699 0.83723 0.85496 0.90816 0.91988 0.91792 0.86521 0.85628 0.70957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.99 10.06 71.24 0.72 -1.28 16 2 C -0.03 -0.87 6.95 40.95 0.28 -0.59 16 3 C -0.05 -1.72 11.79 83.52 0.98 -0.73 16 4 N -0.53 -18.51 11.25 -200.31 -2.25 -20.77 16 5 C 0.18 5.72 12.56 180.26 2.26 7.99 16 6 N -0.44 -14.40 2.25 -518.61 -1.16 -15.56 16 7 C 0.11 3.43 4.96 85.63 0.42 3.85 16 8 C 0.47 18.59 7.69 87.66 0.67 19.27 16 9 O -0.60 -27.60 15.99 -3.08 -0.05 -27.64 16 10 N -0.46 -19.11 2.11 -635.54 -1.34 -20.45 16 11 C -0.35 -15.09 8.88 84.04 0.75 -14.34 16 12 H 0.11 4.72 7.52 -2.91 -0.02 4.70 16 13 C 0.05 2.46 5.33 84.93 0.45 2.91 16 14 N -0.88 -43.26 13.96 21.66 0.30 -42.96 16 15 Si 0.90 39.72 25.01 68.60 1.72 41.43 16 16 H -0.28 -12.39 6.72 99.48 0.67 -11.73 16 17 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 19 C 0.11 4.58 3.52 86.38 0.30 4.88 16 20 C -0.12 -3.83 6.14 29.85 0.18 -3.65 16 21 C 0.49 15.58 8.33 71.24 0.59 16.18 16 22 O -0.55 -21.31 16.74 21.97 0.37 -20.94 16 23 O -0.50 -11.53 13.42 -51.44 -0.69 -12.22 16 24 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.04 1.40 7.96 -2.38 -0.02 1.38 16 27 H 0.18 4.81 8.06 -2.91 -0.02 4.79 16 28 H 0.23 5.45 8.06 -2.91 -0.02 5.42 16 29 H 0.15 3.75 8.05 -2.39 -0.02 3.73 16 30 H 0.13 3.91 7.71 -2.38 -0.02 3.90 16 31 H 0.28 13.19 8.31 -92.71 -0.77 12.42 16 32 H 0.06 2.73 3.50 -2.39 -0.01 2.72 16 33 H 0.06 2.82 7.31 -2.39 -0.02 2.80 16 34 H 0.12 3.59 8.14 -2.39 -0.02 3.57 16 35 H 0.13 3.94 8.14 -2.39 -0.02 3.92 16 36 H 0.43 5.63 9.10 -74.06 -0.67 4.96 16 Total: -1.00 -65.88 316.02 4.92 -60.95 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.41 Total: 23.68 kcal Atomic # 6 Polarization: 26.86 SS G_CDS: 7.63 Total: 34.49 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -4.46 Total: -99.74 kcal Atomic # 8 Polarization: -60.43 SS G_CDS: -0.37 Total: -60.81 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 1.72 Total: 41.43 kcal Total: -65.88 4.92 -60.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600631963.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.529 kcal (2) G-P(sol) polarization free energy of solvation -65.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds